New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3913955	48 (1.140)	3 (0.070)	3/246	NT	6.1%	coding (124/1302 nt)	PP_3453	sensor protein RstB
	?	NC_002947	= 3913988	46 (1.140)					coding (91/1302 nt)	PP_3453	sensor protein RstB

CTCATCGCTCAAACCGGCCTGATCCCTGCGCAGCAGCTGCAGTTCCAGCGGTGCGAAATCACTGGCCAGTTCCTGCTCCACCGCTGGCCACTGCTCGCGCGGAGCCTGGCGGAACTGGCGCACGATCAACGCTTGTACACCCTTGGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3913806‑3913955 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctgTTCCGCGACCGGTTCATGGCCTACAACCTGGACCAGGCCAAGGGTGTACAAGCGTTGATCGTGCGCCAGTTCCGCCAGGCTCCGCGCGAGCAGTGGCCAGCGGTGGAGCAGGAACTGGCCAGTGATTTCGCACCGCTGGAACTGCAG  <  NC_002947/3913988‑3913842                                                                                                                                                                                                                                                                                                           CTCATCGCTCAAACCGGCCTGATCCCTGCGCAGCAGCTGCAGTTCCAGCGGTGCGAAATCACTGGCCAGTTCCTGCTCCACCGCTGGCCACTGCTCGCGCGGAGCCTGGCGGAACTGGCGCACGATCAACGCTTGTACACCCTTGGCCT                                                                                                                                                      >  2:162604/1‑149                                              CAGCGGTGCGAAATCACTGGCCAGTTCCTGCTCCACCGCTGGCCACTGCTCGCGCGGAGCCTGGCGGAACTGGCGCACGATCAACGCTTGTACACCCTTGGCCTGTTCCGCGACCGGTTCATGGCCTACAACCTGGACCAGGCCAAGG                                                                                                          <  3:88506/148‑1                                                                          TGCTCCACCGCTGGCCACTGCTCGCGCGGAGCCTGGCGGAACTGGCGCACGATCAACGCTTGTACACCCTTGGCCTGTTCCGCGACCGGTTCATGGCCTACAACCTGGACCAGGCCAA                                                                                                            <  1:123907/118‑1                                                                          TGCTCCACCGCTGGCCACTGCTCGCGCGGAGCCTGGCGGAACTGGCGCACGATCAACGCTTGTACACCCTTGGCCTGTTCCGCGACCGGTTCATGGCCTACAACCTGGACCAGGCCAA                                                                                                            >  2:123907/1‑118                                                                                                                                                    CTGTTCCGCGACCGGTTCATGGCCTACAACCTGGACCAGGCCAAGGGTGTACAAGCGTTGATCGTGCGCCAGTTCCGCCAGGCTCCGCGCGAGCAGTGGCCAGCGGTGGAGCAGGAACTGGCCAGTGATTTCGCACCGCTGGAACTGCA   <  3:154299/149‑1                                                                                                                                                     TGTTCCGCGACCGGTTCATGGCCTACAACCTGGACCAGGCCAAGGGTGTACAAGCGTTGATCGTGCGCCAGTTCCGCCAGGCTCCGCGCGAGCAGTGGCCAGCGGTGGAGCAGGAACTGGCCAGTGATTTCGCACCGCTGGAACTGCAG  >  5:230993/1‑149                                                                                                                                                      GTTCCGCGACCGGTTCATGGCCTACAACCTGGACCAGGCCAAGGGTGTACAAGCGTTGATCGTGCGCCAGTTCCGCCAGGCTCCGCGCGAGCAGTGGCCAGCGGTGGAGCAGGAACTGGCCAGTGATTTCGCACCGC             <  7:21610/137‑1                                                                                                                                                      GTTCCGCGACCGGTTCATGGCCTACAACCTGGACCAGGCCAAGGGTGTACAAGCGTTGATCGTGCGCCAGTTCCGCCAGGCTCCGCGCGAGCAGTGGCCAGCGGTGGAGCAGGAACTGGCCAGTGATTTCGCACCGC             >  8:21610/1‑137                                                                                                                                                                                                                                                                                                           CTCATCGCTCAAACCGGCCTGATCCCTGCGCAGCAGCTGCAGTTCCAGCGGTGCGAAATCACTGGCCAGTTCCTGCTCCACCGCTGGCCACTGCTCGCGCGGAGCCTGGCGGAACTGGCGCACGATCAACGCTTGTACACCCTTGGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3913806‑3913955 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctgTTCCGCGACCGGTTCATGGCCTACAACCTGGACCAGGCCAAGGGTGTACAAGCGTTGATCGTGCGCCAGTTCCGCCAGGCTCCGCGCGAGCAGTGGCCAGCGGTGGAGCAGGAACTGGCCAGTGATTTCGCACCGCTGGAACTGCAG  <  NC_002947/3913988‑3913842

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.