New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3913955	48 (1.140)	3 (0.070)	3/246	NT	6.1%	coding (124/1302 nt)	PP_3453	sensor protein RstB
	?	NC_002947	= 3913988	46 (1.140)					coding (91/1302 nt)	PP_3453	sensor protein RstB

CTGCAGTTCCAGCGGTGCGAAATCACTGGCCAGTTCCTGCTCCACCGCTGGCCACTGCTCGCGCGGAGCCTGGCGGAACTGGCGCACGATCAACGCTTGTACACCCTTGGCCTGGTCCAGGTTGTAGGCCATGAACCGGTCGCGGAACAGGCCGACGATGGTGTCAGGGATGAACAGCAACGCGCCGGCGTAGGCGACGATGATCACCAGGTACAACCGCACCAGGATCTTGAGCATGGCCGATCAGCACTCCCACTCGACACGGCTGAACAGG  >  NC_002947/3913842‑3914115                                                                                                                                                   |                                                                                                                                cTGCAGTTCCAGCGGTGCGAAATCACTGGCCAGTTCCTGCTCCACCGCTGGCCACTGCTCGCGCGGAGCCTGGCGGAACTGGCGCACGATCAACGCTTGTACACCCTTGGCCTGGTCCAGGTTGTAGGCCATGAACCGGTCGCGGAAca                                                                                                                               >  5:230993‑M2/1‑147 (MQ=255)  tGCAGTTCCAGCGGTGCGAAATCACTGGCCAGTTCCTGCTCCACCGCTGGCCACTGCTCGCGCGGAGCCTGGCGGAACTGGCGCACGATCAACGCTTGTACACCCTTGGCCTGGTCCAGGTTGTAGGCCATGAACCGGTCGCGGAAcag                                                                                                                              <  3:154299‑M2/149‑4 (MQ=255)            gCGGTGCGAAATCACTGGCCAGTTCCTGCTCCACCGCTGGCCACTGCTCGCGCGGAGCCTGGCGGAACTGGCGCACGATCAACGCTTGTACACCCTTGGCCTGGTCCAGGTTGTAGGCCATGAACCGGTCGCGGAAc                                                                                                                                >  8:21610‑M2/1‑136 (MQ=255)            gCGGTGCGAAATCACTGGCCAGTTCCTGCTCCACCGCTGGCCACTGCTCGCGCGGAGCCTGGCGGAACTGGCGCACGATCAACGCTTGTACACCCTTGGCCTGGTCCAGGTTGTAGGCCATGAACCGGTCGCGGAAc                                                                                                                                <  7:21610‑M2/137‑2 (MQ=255)            gCGGTGCGAAATCACTGGCCAGTTCCTGCTCCACCGCTGGCCACTGCTCGCGCGGAGCCTGGCGGAACTGGCGCACGATCAACGCTTGTACACCCTTGGCCTGGTCCAGGTTGTAGGCCATGAACCGGTCGCGGAACAGGCCGACGATg                                                                                                                    >  8:33386/1‑149 (MQ=255)               gTGCGAAATCACTGGCCAGTTCCTGCTCCACCGCTGGCCACTGCTCGCGCGGAGCCTGGCGGAACTGGCGCACGATCAACGCTTGTACACCCTTGGCCTGGTCCAGGTTGTAGGCCATGAACCGGTCGCGGAACAGGCCGACGATGgtg                                                                                                                 <  7:77359/149‑1 (MQ=255)                   gAAATCACTGGCCAGTTCCTGCTCCACCGCTGGCCACTGCTCGCGCGGAGCCTGGCGGAACTGGCGCACGATCAACGCTTGTACACCCTTGGCCTGGTCCAGGTTGTAGGCCATGAACCGGTCGCGGAACGGGCCGACGATGGTGTCAg                                                                                                             >  7:42922/1‑149 (MQ=255)                     aaTCACTGGCCAGTTCCTGCTCCACCGCTGGCCACTGCTCGCGCGGAGCCTGGCGGAACTGGCGCACGATCAACGCTTGTACACCCTTGGCCTGGTCCAGGTTGTAGGCCATGAACCGGTCGCGGAACAGGCCGACGATGGTGTCAggg                                                                                                           >  5:158673/1‑149 (MQ=255)                     aaTCACTGGCCAGTTCCTGCTCCACCGCTGGCCACTGCTCGCGCGGAGCCTGGCGGAACTGGCGCACGATCAACGCTTGTACACCCTTGGCCTGGTCCAGGTTGTAGGCCATGAACCGGTCGCGGAACAGGCCGACGATGGTGTCAggg                                                                                                           <  7:6484/149‑1 (MQ=255)                          cTGGCCAGGTCCGGCTCCACCGCTGGCCACTGCTCGCGCGGAGCCGGGCGGAACTGGCGCACGATCAACGCTTGTACACCCTTGGCCTGGGCCAGGGTGTAGGCCATGAACCGGTCGCGGAACAGGCCGACGATGGTGTCAGGGATGaa                                                                                                      <  6:85598/149‑1 (MQ=255)                             gCCAGTTCCTGCTCCACCGCTGGCCACTGCTCGCGCGGAGCCTGGCGGAACTGGCGCACGATCAACGCTTGTACACCCTTGGCCTGGTCCAGGTTGTAGGCCATGAACCGGTCGCGGAACAGGCCGACGATGGTGTCAGGGATGAACaa                                                                                                   >  1:40667/1‑148 (MQ=255)                              ccAGTTCCTGCTCCACCGCTGGCCACTGCTCGCGCGGAGCCTGGCGGAACTGGCGCACGATCAACGCTTGTACACCCTTGGCCTGGTCCAGGTTGTAGGCCATGAACCGGTCGCGGAACAGGCCGACGATGGTGTCAGGGATGAACAGc                                                                                                  <  7:33386/149‑1 (MQ=255)                                aGTTCCTGCTCCACCGCTGGCCACTGCTCGCGCGGAGCCTGGCGGAACTGGCGCACGATCAACGCTTGTACACCCTTGGCCTGGTCCAGGTTGTAGGCCATGAACCGGTCGCGGAACAGGCCGACGATGGTGTCAGGGATGAACAGCaa                                                                                                <  2:128937/149‑1 (MQ=255)                                aGTTCCTGCTCCACCGCTGGCCACTGCTCGCGCGGAGCCTGGCGGAACTGGCGCACGATCAACGCTTGTACACCCTTGGCCTGGTCCAGGTTGTAGGCCATGAACCGGTCGCGGAACAGGCCGACGATGGTGTCAGGGATGAACAGCaa                                                                                                >  1:128937/1‑149 (MQ=255)                                     cTGCTCCACCGCTGGCCACTGCTCGCGCGGAGCCTGGCGGAACTGGCGCACGATCAACGCTTGTACACCCTTGGCCTGGTCCAGGTTGTAGGCCATGAACCGGTCGCGGAACAGGCCGACGATg                                                                                                                    >  6:129397/1‑124 (MQ=255)                                           cACCGCTGGCCACTGCTCGCGCGGAGCCTGGCGGAACTGGCGCACGATCAACGCTTGTACACCCTTGGCCTGGTCCAGGTTGTAGGCCATGAACCGGTCGCGGAACAGGCCGACGATGGTGTCAGGGATGAACAGCAACGCGCCGGc                                                                                       <  5:9080/147‑1 (MQ=255)                                             ccGCTGGCCACTGCTCGCGCGGAGCCTGGCGGAACTGGCGCACGATCAACGCTTGTACACCCTTGGCCTGGTCCAGGTTGTAGGCCATGAACCGGTCGCGGAACAGGCCGACGATGGTGTCAGGGATGAACAGCAACGCGCCGGCGTAg                                                                                   <  8:236772/149‑1 (MQ=255)                                               gCTGGCCACTGCTCGCGCGGAGCCTGGCGGAACTGGCGCACGATCAACGCTTGTACACCCTTGGCCTGGTCCAGGTTGTAGGCCATGAACCGGTCGCGGAACAGGCCGACGATGGTGTCAGGGATGAACAGCAAc                                                                                               >  6:275138/1‑135 (MQ=255)                                               gCTGGCCACTGCTCGCGCGGAGCCTGGCGGAACTGGCGCACGATCAACGCTTGTACACCCTTGGCCTGGTCCAGGTTGTAGGCCATGAACCGGTCGCGGAACAGGCCGACGATGGTGTCAGGGATGAACAGCAAc                                                                                               <  5:275138/135‑1 (MQ=255)                                                   gCCACTGCTCGCGCGGAGCCTGGCGGAACTGGCGCACGATCAACGCTTGTACACCCTTGGCCTGGTCCAGGTTGTAGGCCATGAACCGGTCGCGGAACAGGCCGACGATGGTGTCAg                                                                                                             >  5:95463/1‑117 (MQ=255)                                                   gCCACTGCTCGCGCGGAGCCTGGCGGAACTGGCGCACGATCAACGCTTGTACACCCTTGGCCTGGTCCAGGTTGTAGGCCATGAACCGGTCGCGGAACAGGCCGACGATGGTGTCAg                                                                                                             <  6:95463/117‑1 (MQ=255)                                                   gCCACTGCTCGCGCGGAGCCTGGCGGAACTGGCGCACGATCAACGCTTGTACACCCTTGGCCTGGTCCAGGTTGTAGGCCATGAACCGGTCGCGGAACAGGCCGACGATGGTGTCAGGGATGAACAGCAACGCGCCGGCGTAGGcgac                                                                              >  8:45665/1‑148 (MQ=255)                                                      aCTGCTCGCGCGGAGCCTGGCGGAACTGGCGCACGATCAACGCTTGTACACCCTTGGCCTGGTCCAGGTTGTAGGCCATGAACCGGTCGCGGAACAGGCCGACGATGGTGTCAGGGATGAACAGCAACGCGCCGGCGTAGGCGACgatg                                                                          <  7:45665/149‑1 (MQ=255)                                                           tCGCGCGGAGCCTGGCGGAACTGGCGCACGATCAACGCTTGTACACCCTTGGCCTGGTCCAGGTTGTAGGCCATGAACCGGTCGCGGAACAGGCCGACGATGGTGTCAgg                                                                                                            <  6:276861/110‑1 (MQ=255)                                                           tCGCGCGGAGCCTGGCGGAACTGGCGCACGATCAACGCTTGTACACCCTTGGCCTGGTCCAGGTTGTAGGCCATGAACCGGTCGCGGAACAGGCCGACGATGGTGTCAGGGATGAACAGCAACGCGCCGGCGTAGGCGACGATGATCAc                                                                     <  8:217858/149‑1 (MQ=255)                                                             gcgcgGAGCCTGGCGGAACTGGCGCACGATCAACGCTTGTACACCCTTGGCCTGGTCCAGGTTGTAGGCCATGAACCGGTCGCGGAACAGGCCGACGATGGTGTCAGGGATGAACAGCAACGCGCCGGCGTAGGCGACGATGATCACCa                                                                   >  4:218631/1‑149 (MQ=255)                                                                          cGGAACTGGCGCACGATCAACGCTTGTACACCCTTGGCCTGGTCCAGGTTGTAGGCCATGAACCGGTCGCGGAACAGGCCGACGATGGTGTCAGGGATGAACAGCAACGCGCCGGCGTAGGCGACGATGATCACCAGGTACAACCGCAc                                                      >  6:238892/1‑149 (MQ=255)                                                                            gAACTGGCGCACGATCAACGCTTGTACACCCTTGGCCTGGTCCAGGTTGTAGGCCATGAACCGGTCGCGGAACAGGCCGACGATGGTGTCAGGGATGAACAGCAACGCGACGGCGTAGGCGACGATGATCACCAGGTACAACCGCACCa                                                    <  3:29363/149‑1 (MQ=255)                                                                                     cACGATCAACGCTTGTACACCCTTGGCCTGGTCCAGGTTGTAGGCCATGAACCGGTCGCGGAACAGGCCGACGATGGTGTCAGGGATGAACAGCAACGCGCCGGCGTAGGCGACGATGATCACCAGGTACAACCGCACCAGGATCTTGa                                           <  4:9924/149‑1 (MQ=255)                                                                                      aCGATCAACGCTTGTACAGCCTTGGCCTGGTCCAGGTTGTAGGCCATGAACCGGTCGCGGAACAGGCCGACGATGGTGTCAGGGATGAACAGCAACGCGCCGGCGTAGGCGACGATGATCACCAGGTACAACCGCACCAGGATCTTg                                            <  2:95138/147‑1 (MQ=255)                                                                                      aCGATCAACGCTTGTACACCCTTGGCCTGGTCCAGGTTGTAGGCCATGAACCGGTCGCGGAACAGGCCGACGATGGTGTCAGGGATGAACAGCAACGCGCCGGCGTAGGCGACGATGATCACCAGGTACAACCGCACCAGGATCTTGa                                           >  1:95138/1‑148 (MQ=255)                                                                                       cGATCAACGCTTGTACACCCTTGGCCTGGTCCAGGTTGTAGGCCATGAACCGGTCGCGGAACAGGCCGACGATGGTGTCAGGGATGAACAACAACGCGCCGGCGTAGGCGACGATGATCACCAGGTACAACCGCACCAGGATCTTGAGc                                         <  2:40667/149‑1 (MQ=255)                                                                                          tCAACGCTTGTACACCCTTGGCCTGGTCCAGGTTGTAGGCCATGAACCGGTCGCGGAACAGGCCGACGATGGTGTCAGGGATGAACAGCAACGCGCCGGCGTAGGCGACGATGATCACCAGGTACAACCGCACCAGGATCTTGAg                                          <  4:218768/145‑1 (MQ=255)                                                                                          tCAACGCTTGTACACCCTTGGCCTGGTCCAGGTTGTAGGCCATGAACCGGTCGCGGAACAGGCCGACGATGGTGTCAGGGATGAACAGCAACGCGCCGGCGTAGGCGACGATGATCACCAGGTACAACCGCACCAGGATCTTGAGCag                                       >  3:218768/1‑147 (MQ=255)                                                                                                   gTACACCCTTGGCCTGGTCCAGGTTGTAGGCCATGAACCGGTCGCGGAACAGGCCGACGATGGTGTCCGGGATGAACAGCAACGCGCCGGCGTAGGCGACgatga                                                                         <  4:261338/105‑1 (MQ=255)                                                                                                   gTACACCCTTGGCCTGGTCCAGGTTGTAGGCCATGAACCGGTCGCGGAACAGGCCGACGATGGTGTCCGGGATGAACAGCAACGCGCCGGCGTAGGCGACgatga                                                                         >  3:261338/1‑105 (MQ=255)                                                                                                         ccTTGGCCTGGTCCAGGTTGTAGGCCATGAACCGGTCGCGGAAcaggccaagggtgtacaagcgttgatcgtgcgccagttccgccaggctccgcgcgagcagtggccagcggtggagcaggaactggccagtgatttcgcaccgctg                        <  3:88506‑M2/148‑106 (MQ=255)                                                                                                           ttGGCCTGGTCCAGGTTGTAGGCCATGAACCGGTCGCGGAAcaggccaagggtgtacaagcgttgatcgtgcgccagttccgccaggctccgcgcgagcagtggccagcggtggagca                                                    >  2:123907‑M2/1‑41 (MQ=255)                                                                                                           ttGGCCTGGTCCAGGTTGTAGGCCATGAACCGGTCGCGGAAcaggccaagggtgtacaagcgttgatcgtgcgccagttccgccaggctccgcgcgagcagtggccagcggtggagca                                                    <  1:123907‑M2/118‑78 (MQ=255)                                                                                                           ttGGCCTGGTCCAGGTTGTAGGCCATGAACCGGTCGCGGAACAGGCCGACGATGGTGTCAGGGATGAACAGCAACGCGCCGGCGTAGGCGACGATGATCACCAGGTACAACCGCAcc                                                     <  6:1722/117‑1 (MQ=255)                                                                                                           ttGGCCTGGTCCAGGTTGTAGGCCATGAACCGGTCGCGGAACAGGCCGACGATGGTGTCAGGGATGAACAGCAACGCGCCGGCGTAGGCGACGATGATCACCAGGTACAACCGCAcc                                                     >  5:1722/1‑117 (MQ=255)                                                                                                              gCCTGGTCCAGGTTGTAGGCCATGAACCGGTCGCGGAACAGGCCGACGATGGTGTCAGGGATGAACAGCAACGCGCCGGCGTAGGCGACGATGATCACCAGGTACAACCGCACCAGGATCTTGAGCATGGCCGATCAGCAc                          >  7:176980/1‑141 (MQ=255)                                                                                                              gCCTGGTCCAGGTTGTAGGCCATGAACCGGTCGCGGAACAGGCCGACGATGGTGTCAGGGATGAACAGCAACGCGCCGGCGTAGGCGACGATGATCACCAGGTACAACCGCACCAGGATCTTGAGCATGGCCGATCAGCAc                          <  8:176980/141‑1 (MQ=255)                                                                                                               ccTGGTCCAGGTTGTAGGCCATGAACCGGTCGCGGAACAGGCCGACGATGGTGTCAGGGATGAACAGCAACGCGCCGGCGTAGGCGACGATGATCACCAGGTAc                                                              >  8:45764/1‑104 (MQ=255)                                                                                                               ccTGGTCCAGGTTGTAGGCCATGAACCGGTCGCGGAACAGGCCGACGATGGTGTCAGGGATGAACAGCAACGCGCCGGCGTAGGCGACGATGATCACCAGGTAc                                                              <  7:45764/104‑1 (MQ=255)                                                                                                                cTGGTCCAGGTTGTAGGCCATGAACCGGTCGCGGAACAGGCCGACGATGGTGTCAGGGATGAACAGCAACGCGCCGGCGTAGGCGACGATGATCACCAGGTACAACCGCACCAGGATCTTGAGCATGGCCGATCAGCACTCCCACTCGa                >  6:77425/1‑149 (MQ=255)                                                                                                                          ttGTCGGCCATGAACCGGTCGCGGAACAGGCCGACGATGGTGTCAGGGATGAACAGCAACGCGCCGGCGTAGGCGACGATGATCACCAGGTACAACCGCAGCAGGATCTTGAGCATGGCCGATCAGCACTCCCACTCGACACGGCTGaa      <  7:219158/149‑1 (MQ=255)                                                                                                                          ttGTAGGCCATGAACCGGTCGCGGAACAGGCCGACGATGGTGTCAGGGATGAACAGCAACGCGCCGGCGTAGGCGACGATGATCACCAGGTACAACCGCACCAGGATCTTGAGCATgg                                     <  7:26475/118‑1 (MQ=255)                                                                                                                          ttGTAGGCCATGAACCGGTCGCGGAACAGGCCGACGATGGTGTCAGGGATGAACAGCAACGCGCCGGCGTAGGCGACGATGATCACCAGGTACAACCGCACCAGGATCTTGAGCATgg                                     >  8:26475/1‑118 (MQ=255)                                                                                                                                  cATGAACCGGTCGCGGAACAGGCCGACGATGGTGTCAGGGATGAACAGCAACGCGCCGGCGTAGGCGACGATGATCACCAGGTACAACCGCACCAGGATCTTGAGCATGGCCGATCAGCACTCCCACTCGACACGGCt         <  2:53894/138‑1 (MQ=255)                                                                                                                                  cATGAACCGGTCGCGGAACAGGCCGACGATGGTGTCAGGGATGAACAGCAACGCGCCGGCGTAGGCGACGATGATCACCAGGTACAACCGCACCAGGATCTTGAGCATGGCCGATCAGCACTCCCACTCGACACGGCt         >  1:53894/1‑138 (MQ=255)                                                                                                                                     gAACCGGTCGCGGAACAGGCCGACGATGGTGTCAGGGATGAACAGCAACGCGCCGGCGTAGGCGACGATGATCACCAGGTACAACCGCACCAGGATCTTGAGCATGGCCGATCAGCACTCCCACTCGACACGGCTGAACAgg  <  2:15382/142‑1 (MQ=255)                                                                                                                                     gAACCGGTCGCGGAACAGGCCGACGATGGTGTCAGGGATGAACAGCAACGCGCCGGCGTAGGCGACGATGATCACCAGGTACAACCGCACCAGGATCTTGAGCATGGCCGATCAGCACTCCCACTCGACACGGCTGAACAgg  >  1:15382/1‑142 (MQ=255)                                                                                                                                                   |                                                                                                                                CTGCAGTTCCAGCGGTGCGAAATCACTGGCCAGTTCCTGCTCCACCGCTGGCCACTGCTCGCGCGGAGCCTGGCGGAACTGGCGCACGATCAACGCTTGTACACCCTTGGCCTGGTCCAGGTTGTAGGCCATGAACCGGTCGCGGAACAGGCCGACGATGGTGTCAGGGATGAACAGCAACGCGCCGGCGTAGGCGACGATGATCACCAGGTACAACCGCACCAGGATCTTGAGCATGGCCGATCAGCACTCCCACTCGACACGGCTGAACAGG  >  NC_002947/3913842‑3914115

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.