New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4043365 =	45 (1.070)	3 (0.080)	3/240	NT	6.8%	coding (379/978 nt)	PP_3564	AraC family transcriptional regulator
	?	NC_002947	4043439 =	40 (1.020)					coding (305/978 nt)	PP_3564	AraC family transcriptional regulator

TCAGGCAGGCCGCCAAGGCGGGTGTCAAGCTGGTGGGGGTCGACAATGGCGCCTTCCTGCTGGCTGCCTGCGGCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4043442‑4043365 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcctgcCTGAGCAACGCCTGGTAACGTGGCGCCAGCGCCGCGGTGGCCATGGCACTGCGACCGCCGAACACCACCAGGTAGTCGAATAGGTCAAGGTCGAGCTGATCGGCAATGGCCTCGACCTGCAGCACCGCGCCACTGCTCGACGGTACC  >  NC_002947/4043439‑4043585                                                                                                                                                                                                                                   TCAGGCAGGCCGCCAAGGCGGGTGTCAAGCTGGTGGGGGTCGACAATGGCGCCTTCCTGCTGGCTGCCTGCGGCCTGCCTGAGCAACGCCTGGTAACGTGGCGCCAGCGCCGCGGTGGCCATGGCACTGCGACCGCCGAACACCACCAG                                                                              >  1:10791/1‑149       AGGCCGCCAAGGCGGGTGTCAAGCTGGTGGGGGTCGACAATGGCGCCTTCCTGCTGGCTGCCTGCGGCCTGCCTGAGCAACGCCTGGTAACGTGGCGCCAGCGCCGCGGTGGCCAT                                                                                                         <  5:149696/116‑1       AGGCCGCCAAGGCGGGTGTCAAGCTGGTGGGGGTCGACAATGGCGCCTTCCTGCTGGCTGCCTGCGGCCTGCCTGAGCAACGCCTGGTAACGTGGCGCCAGCGCCGCGGTGGCCAT                                                                                                         >  6:149696/1‑116                                                                        GGCCTGCCTGAGCAACGCCTGGTAACGTGGCGCCAGCGCCGCGGTGGCCATGGCACTGCGACCGCCGAACACCACCAGGTAGTCGAATAGGTCAAGGTCGAGCTGATCGGCAATGGCCTCGACCTGCAGCACCGCGCCACTGCTCGACG       >  2:140927/1‑149                                                                           CTGCCTGAGCAACGCCTGGTAACGTGGCGCCAGCGCCGCGGTGGCCATGGCACTGCGACCGCCGAACACCACCAGGTAGTCGAATAGGTCAAGGTCGAGCTGATCGGCAATGGCCTCGACCTGCAGCACCGCGCCACTGCTCGACGGTA    <  2:198491/149‑1                                                                              CCTGAGCAACGCCTGGTAACGTGGCGCCAGCGCCGCGGTGGCCATGGCACTGCGACCGCCGAACACCACCAGGTAGTCGAATAGGTCAAGGTCGAGCTGATCGGCAATGGCCTCGACCTGCAGCACCGCGCCACTGCTCGACGGTACC  <  6:16601/148‑1                                                                                                                                                                                                                                   TCAGGCAGGCCGCCAAGGCGGGTGTCAAGCTGGTGGGGGTCGACAATGGCGCCTTCCTGCTGGCTGCCTGCGGCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4043442‑4043365 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcctgcCTGAGCAACGCCTGGTAACGTGGCGCCAGCGCCGCGGTGGCCATGGCACTGCGACCGCCGAACACCACCAGGTAGTCGAATAGGTCAAGGTCGAGCTGATCGGCAATGGCCTCGACCTGCAGCACCGCGCCACTGCTCGACGGTACC  >  NC_002947/4043439‑4043585

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.