New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4043365 =	45 (1.070)	3 (0.080)	3/240	NT	6.8%	coding (379/978 nt)	PP_3564	AraC family transcriptional regulator
	?	NC_002947	4043439 =	40 (1.020)					coding (305/978 nt)	PP_3564	AraC family transcriptional regulator

CTGCAACTGCGGAAACGCAGCACGAAACTCGGCTTCGTGACGCCAGTGCACCACCACTTTGTGCCCCTGCAGCAGGCCGCAGGCAGCCAGCAGGAAGGCGCCATTGTCGACCCCCACCAGCTTGACACCCGCCTTGGCGGCCTGCCTGAGCAACGCCTGGTAACGTGGCGCCAGCGCCGCGGTGGCCATGGCACTGCG‑‑‑ACCGCCGAACACCACCAGGTAGTCGAATAGGTCAAGGTCGAGCTGATCGGCAATGGCCTCGACCTGCAGCACCGCGCCACTGCTCGACGGTACC  >  NC_002947/4043294‑4043585                                                                                                                                                  |                                                                                                                                                      ctggtggtgttcggcggtcgcagtgccatggccaccgcggcgctggcgccacgttaccaggcgttgctcagGCAGGCCGCAGGCAGCCAGCAGGAAGGCGCCATTGTCGACCCCCACCAGCTTGACACCCGCCTTGGCGGCCTGCCTGa                                                                                                                                                    >  1:10791‑M1/72‑149 (MQ=255) cTGCAACTGCGGAAACGCAGCACGAAACTCGGCTTCGTGACGCCAGTGCACCACCACTTTGTGCCCCTGCAGCAGGCCGCAGGCAGCCAGCAGGAAGGCGCCATTGTCGACCCCCACCAGCTTGACACCCGCCTTGGCGgcctgcct                                                                                                                                                      >  5:136937/1‑147 (MQ=255)       cTGCGGAAACGCAGCACGAAACTCGGCTTCGTGACGCCAGTGCACCACCACTTTGTGCCCCTGCAGCAGGCCGCAGGCAGCCAGCAGGAAGGCGCCATTGTCGACCCCCACCAGCTTGACACCCGCCTTGGCGGCCTGCCTGAGCAACg                                                                                                                                              <  4:97642/149‑1 (MQ=255)          cGGAAACGCAGCACGAAACTCGGCTTCGTGACGCCAGTGCACCACCACTTTGTGCCCCTGCAGCAGGCCGCAGGCAGCCAGCAGGAAGGCGCCATTGTCGACCCCCACCAGCTTGACACCCGCCTTGGCGGCCTGCCTGAGCAACGc                                                                                                                                             <  3:244418/147‑1 (MQ=255)          cGGAAACGCAGCACGAAACTCGGCTTCGTGACGCCAGTGCACCACCACTTTGTGCCCCTGCAGCAGGCCGCAGGCAGCCAGCAGGAAGGCGCCATTGTCGACCCCCACCAGCTTGACACCCGCCTTGGCGGCCTGCCTGAGCAACGc                                                                                                                                             <  2:39108/147‑1 (MQ=255)           ggAAACGCAGCACGAAACTCGGCTTCGTGACGCCAGTGCACCACCACTTTGTGCCCCTGCAGCAGGCCGCAGGCAGCCAGCAGGAAGGCGCCATTGTCGACCCCCACCAGCTTGACACCCGCCTTGGCGGCCTGCCTGAGCAACGCCTg                                                                                                                                          <  8:224058/149‑1 (MQ=255)           ggAAACGCAGCACGAAACTCGGCTTCGTGACGCCAGTGCACCACCACTTTGTGCCCCTGCAGCAGGCCGCAGGCAGCCAGCAGGAAGGCGCCATTGTCGACCCCCACCAGCTTGACACCCGCCTTGGCGGCCTGCCTGAGCAACGCCTg                                                                                                                                          <  3:48049/149‑1 (MQ=255)             aaaCGCAGCACGAAACTCGGCTTCGTGACGCCAGTGCACCACCACTTTGTGCCCCTGCAGCAGGCCGCAGGCAGCCAGCAGGAAGGCGCCATTGTCGACCCCCACCAGCTTGACACCCGCCTTGGCGGCCTGCCTGAGCAACGCCTgg                                                                                                                                         >  2:264819/1‑148 (MQ=255)                       cGAAACTCGGCTTCGTGACGCCAGTGCACCACCACTTTGTGCCCCTGCAGCAGGCCGCAGGCAGCCAGCAGGAAGGCGCCATTGTCGACCCCCACCAGCTTGACACCCGCCTTGGCGGCCTGCCTGAGCAACGCCTGGTAACGTGgcgc                                                                                                                              <  1:264819/149‑1 (MQ=255)                                    cGTGACGCCAGTGCACCACCACTTTGTGCCCCTGCAGCAGGCCGCAGGCAGCCAGCAGGAAGGCGCCATTGTCGACCCCCACCAGCTTGACACCCGCCTTGGCGGCCTGCCTGAGCAACGCCTGGTAACGTGGCGCCAGCGCCGCAGTg                                                                                                                 >  6:212613/1‑149 (MQ=255)                                      tGACGCCAGTGCACCACCACTTTGTGCCCCTGCAGCAGGCCGCAGGCAGCCAGCAGGAAGGCGCCATTGTCGACCCCCACCAGCTTGACACCCGCCTTGGCGGCCTGCCTGAGCAACGCCTGGTAACGTGGCGCCAGCGCCGCGGTGGc                                                                                                               <  4:173199/149‑1 (MQ=255)                                          gCCAGTGCACCACCACTTTGTGCCCCTGCAGCAGGCCGCAGGCAGCCAGCAGGAAGGCGCCATTGTCGACCCCCACCAGCTTGACACCCGCCTTGGCGGCCTGCCTGAGCAACGCCTGGTAACGTg                                                                                                                                  >  7:124472/1‑126 (MQ=255)                                          gCCAGTGCACCACCACTTTGTGCCCCTGCAGCAGGCCGCAGGCAGCCAGCAGGAAGGCGCCATTGTCGACCCCCACCAGCTTGACACCCGCCTTGGCGGCCTGCCTGAGCAACGCCTGGTAACGTg                                                                                                                                  <  8:124472/126‑1 (MQ=255)                                          gCCAGTGCACCACCACTTTGTGCCCCTGCAGCAGGCCGCAGGCAGCCAGCAGGAAGGCGCCATTGTCGACCCCCACCAGCTTGACACCCGCCTTGGCGGCCTGCCTGAGCAACGCCTGGTAACGTGGCGCCAGCGCCGCGGTGGCCATg                                                                                                           >  5:16601/1‑149 (MQ=255)                                              gTGCACCACCACTTTGTGCCCCTGCAGCAGGCCGCAGGCAGCCAGCAGGAAGGCGCCATTGTCGACCCCCACCAGCTTGACACCCGCCTTGGCGGCCTGCCTGAGCAACGCCTGGTAACGTGGCGCCAGCGCCGCGGTGGCCATGGCAc                                                                                                       >  7:128039/1‑149 (MQ=255)                                               tGCACCACCACTTTGTGCCCCTGCAGCAGGCCGCAGGCAGCCAGCAGGAAGGCGCCATTGTCGACCCCCACCAGCTTGACACCCGCCTTGGCGGCCTGCCTGAGCAACGCCTGGTAACGTGGCGCCAGCGCCGCGGTGGCCATGGCACt                                                                                                      <  5:248519/149‑1 (MQ=255)                                                  accaccacTTTGTGCCCATGCAGCAGGCCGCAGGCAGACAGCAGGAAGGCGCCATTGTCGACCCCCACCAGCTTGACACCCGCCTTGGCGGCCTGCCTGAGCAACGCCTGGTAACGTGGCGCCAGCGCCGCGGTGGCCATGGCACTGc                                                                                                    >  1:198491/1‑148 (MQ=255)                                                   ccaccacTTTGTGCCCCTGCAGCAGGCCGCAGGCAGCCAGCAGGAAGGCGCCATTGTCGACCCCCACCAGCTTGACACCCGCCTTGGCGGCCTGCCTGAGCAACGCCTGGTAACGTGGCGCCAGCGCCGCGGTGGCCATGGCACTGCG‑‑‑a                                                                                               >  2:236799/1‑149 (MQ=255)                                                                   cTGCAGCAGGCCGCAGGCAGCCAGCAGGAAGGCGCCATTGTCGACCCCCACCAGCTTGACACCCGCCTTGGCGGCCTGCCTGAGCAACGCCTGGTAACGTGGCGCCAGCGCCGCGGTGGCCATGGCACTGCG‑‑‑ACCGCCGAACAccacca                                                                               <  6:136937/149‑1 (MQ=255)                                                                    tcaggcaggccgccaaggcgggtgtcaagctggtgggggtcgacaatggcgccttcctgctggctgcctgcggcctgcCTGAGCAACGCCTGGTAACGTGGCGCCAGCGCCGCGGTGGCCATGGCACTGCG‑‑‑ACCGCCGAACACCACCAg                                                                              >  1:10791‑M2/79‑149 (MQ=255)                                                                      cagcagGCCGCAGGCAGCCAGCAGGAAGGCGCCATTGTCGACCCCCACCAGCTTGACACCCGCCTTGGCGGCCTGCCTGAGCACCGCCTGGTAACGTGGCGCCAGCGCCGCGGTGGCCATGGCACTGCG‑‑‑ACCGCCGAACACCACCAgg                                                                             >  2:81028/1‑148 (MQ=255)                                                                          aggccgccaaggcgggtgtcaagctggtgggggtcgacaatggcgccttcctgctggctgcctgcggcctgcCTGAGCAACGCCTGGTAACGTGGCGCCAGCGCCGCGGTGGCCAt                                                                                                            <  5:149696‑M2/44‑1 (MQ=255)                                                                          aggccgccaaggcgggtgtcaagctggtgggggtcgacaatggcgccttcctgctggctgcctgcggcctgcCTGAGCAACGCCTGGTAACGTGGCGCCAGCGCCGCGGTGGCCAt                                                                                                            >  6:149696‑M2/73‑116 (MQ=255)                                                                                   gcagCCAGCAGGAAGGCGCCATTGTCGACCCCCACCAGCTTGACACCCGCCTTGGCGGCCTGCCTGAGCAACGCCTGGTAACGTGGCGCCAGCGCCGCGGTGGCCATGGCACTGCG‑‑‑ACCGCCGAACACCACCAGGTAGTCGAATAGGTc                                                               <  1:34991/149‑1 (MQ=255)                                                                                        cagcagGAAGGCGCCATTGTCGACCCCCACCAGCTTGACACCCGCCTTGGCGGCCTGCCTGAGCAACGCCTGGTAACGTGGCGCCAGCGCCGCGGTGGCCATGGCAc                                                                                                       <  8:197792/107‑1 (MQ=255)                                                                                        cagcagGAAGGCGCCATTGTCGACCCCCACCAGCTTGACACCCGCCTTGGCGGCCTGCCTGAGCAACGCCTGGTAACGTGGCGCCAGCGCCGCGGTGGCCATGGCAc                                                                                                       >  7:197792/1‑107 (MQ=255)                                                                                         agcagGAAGGCGCCATTGTCGACCCCCACCAGCTTGACACCCGCCTTGGCGGCCTGCCTGAGCAACGCCTGGTAACGTGGCGCCAGCGCCGCGGTGGCCATGGCACTGCG‑‑‑ACCGCCGAACACCACCAGGTAGTCGAATAGGTCAAGGTc                                                         >  1:30034/1‑149 (MQ=255)                                                                                            agGAAGGCGCCATTGTCGACCCCCACCAGCTTGACACCCGCCTTGGCGGCCTGCCTGAGCAACGCCTGGTAACGTGGCGCCAGCGCCGCGGTGGCCATGGCACTGCG‑‑‑ACCGCCGAACACCACCAGGTAGt                                                                         <  8:85590/130‑1 (MQ=255)                                                                                            agGAAGGCGCCATTGTCGACCCCCACCAGCTTGACACCCGCCTTGGCGGCCTGCCTGAGCAACGCCTGGTAACGTGGCGCCAGCGCCGCGGTGGCCATGGCACTGCG‑‑‑ACCGCCGAACACCACCAGGTAGt                                                                         >  7:85590/1‑130 (MQ=255)                                                                                              gAAGGCGCCATTGTCGACCCCCACCAGCTTGACACCCGCCTTGGCGGCCTGCCTGAGCAACGCCTGGTAACGTGGCGCCAGCGCCGCGGTGGCCATGGCACTg                                                                                                     <  7:135566/103‑1 (MQ=255)                                                                                              gAAGGCGCCATTGTCGACCCCCACCAGCTTGACACCCGCCTTGGCGGCCTGCCTGAGCAACGCCTGGTAACGTGGCGCCAGCGCCGCGGTGGCCATGGCACTg                                                                                                     >  8:135566/1‑103 (MQ=255)                                                                                                aGGCGCCATTGTCGACCCCCACCAGCTTGACACCCGCCTTGGCGGCCTGCCTGAGCAACGCCTGGTAACGTGGCGCCAGCGCCGCGGTGGCCATGGCACTGCG‑‑‑ACCGCCGAACACCACCAGGTAGTCGAATa                                                                   >  5:188216/1‑132 (MQ=255)                                                                                                aGGCGCCATTGTCGACCCCCACCAGCTTGACACCCGCCTTGGCGGCCTGCCTGAGCAACGCCTGGTAACGTGGCGCCAGCGCCGCGGTGGCCATGGCACTGCG‑‑‑ACCGCCGAACACCACCAGGTAGTCGAATa                                                                   <  6:188216/132‑1 (MQ=255)                                                                                                   cgcCATTGTGGACCCCCCCCAGCTTGACACCCGGCTTGGCGGCCTGCCTGAGCAACGCCTGGTTACGTGGCGCCAGGGGCGCGGTGGCCATGGCACTGCG‑‑‑ACCTCCGAACACCACCAGGTATTCGAATAGGTAAAGGTCGAGCTGATCg                                               <  8:128039/149‑1 (MQ=255)                                                                                                    gcCATTGTCGACCCCCACCAGCTTGACACCCGCCTTGGCGGCCTGCCTGAGCAACGCCTGGTAACGTGGCGCCAGCGCCGCGGTGGCCATGGCACTGCG‑‑‑ACCGCCGAACACCACCAGGTAGTCGAATAGGTCAAGGTCGAGCTGATCgg                                              >  1:162178/1‑149 (MQ=255)                                                                                                           tCGACCCCCACCAGCTTGACACCCGCCTTGGCGGCCTGCCTGAGCAACGCCTGGTAACGTGGCGCCAGCGCCGCGGTGGCCATGGCACTGCG‑‑‑ACCGCCGAACACCACCAGGTAGTCGAATAGGTCAAGGTCGAGCTGATCGGCAATGGc                                       <  2:162178/149‑1 (MQ=255)                                                                                                              aCCCCCACCAGCTTGACACCCGCCTTGGCGGCCTGCCTGAGCAACGCCTGGTAACGTGGCGCCAGCGCCGCGGTGGCCATGGCACTGCG‑‑‑ACCGCCGAACACCACCAGGTAGTCGAATAGGTCAAGGTCGAGCTGATCGGCAATGGCCTc                                    >  7:250889/1‑149 (MQ=255)                                                                                                              aCCCCCACCAGCTTGACACCCGCCTTGGCGACCTGCCTGAGCAACGCCTGGTAACGTGGCGCCAGCGCCGCGGTGGCCATGGCACTGCG‑‑‑ACCGCCGAACACCACCAGGTAGTCGAATAGGTCAAGGTCGAg                                                      >  1:37746/1‑131 (MQ=255)                                                                                                              aCCCCCACCAGCTTGACACCCGCCTTGGCGACCTGCCTGAGCAACGCCTGGTAACGTGGCGCCAGCGCCGCGGTGGCCATGGCACTGCG‑‑‑ACCGCCGAACACCACCAGGTAGTCGAATAGGTCAAGGTCGAg                                                      <  2:37746/131‑1 (MQ=255)                                                                                                               cccccACCAGCTTGACACCCGCCTTGGCGGCCTGCCTGAGCAACGCCTGGTAACGTGGCGCCAGCGCCGCGGTGGCCATGGCACTGCG‑‑‑ACCGCCGAACACCACCAGGTAGTCGAATAGGTCAAGGTCGAGCTGa                                                  <  1:220191/134‑1 (MQ=255)                                                                                                               cccccACCAGCTTGACACCCGCCTTGGCGGCCTGCCTGAGCAACGCCTGGTAACGTGGCGCCAGCGCCGCGGTGGCCATGGCACTGCG‑‑‑ACCGCCGAACACCACCAGGTAGTCGAATAGGTCAAGGTCGAGCTGa                                                  >  2:220191/1‑134 (MQ=255)                                                                                                                        gCTTGACACCCGCCTTGGCGGCCTGCCTGAGCAACGCCTGGTAACGTGGCGCCAGCGCCGCGGTGGCCATGGCACTGCGCCTTCCGCCGAACACCACCAGGTAGTCGAATAGGTCAAGGTCGAGCTGATCGGCAATGGCCTCGACCTgc                             <  1:81028/149‑1 (MQ=255)                                                                                                                               acCCGCCTTGGCGGCCTGCCTGAGCAACGCCTGGTAACGTGGCGCCAGCGCCGCGGTGGCCATGGCACTGCG‑‑‑ACCGCCGAACACCACCAGGTAGTCGAATAGGTCAAGGTCGAGCTGATCGGCAATGGCCTCGACCTGCAGCACCgcgc                   >  3:110462/1‑149 (MQ=255)                                                                                                                                cccGCCTTGGCGGCCTGCCTGAGCAACGCCTGGTAACGTGGCGCCAGCGCCGCGGTGGCCATGGCACTGCG‑‑‑ACCGCCGAACACCACCAGGTAGTCGAATAGGTCAAGGTCGAGCTGATCGGCAATGGCCTCGACCTGCAGCACCgcgc                   >  8:117430/1‑148 (MQ=255)                                                                                                                                 ccGCCTTGGCGGCCTGCCTGAGCAACGCCTGGTAACGTGGCGCCAGCGCCGCGGTGGCCATGGCACTGCG‑‑‑ACCGCCGAACACCACCAGGTAGTCGAATAGGTCAAGGTCGAGCTGATCGGCAATGGCCTCGACCTGCAGCACCGCGCCa                 >  3:28407/1‑149 (MQ=255)                                                                                                                                           ggcctgcCTGAGCAACGCCTGGTAACGTGGCGCCAGCGCCGCGGTGGCCATGGCACTGCG‑‑‑ACCGCCGAACACCACCAGGTAGTCGAATAGGTCAAGGTCGAGCTGATCGGCAATGGCCTCGACCTGCAGCACCGCGCCACTGCTCGACg       >  2:140927‑M2/8‑149 (MQ=255)                                                                                                                                              ctgcCTGAGCAACGCCTGGTAACGTGGCGCCAGCGCCGCGGTGGCCATGGCACTGCG‑‑‑ACCGCCGAACACCACCAGGTAGTCGAATAGGTCAAGGTCGAGCTGATCGGCAATGGCCTCGACCTGCAGCACCGCGCCACTGCTCGACGGTa    <  2:198491‑M2/145‑1 (MQ=255)                                                                                                                                                 cCTGAGCAACGCCTGGTAACGTGGCGCCAGCGCCGCGGTGGCCATGGCACTGCG‑‑‑ACCGCCGAACACCACCAGGTAGTCGAATAGGTCAAGGTCGAGCTGATCGGCAATGGCCTCGACCTGCAGCACCGCGCCACTGCTCGACGGTAcc  <  6:16601‑M2/147‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                      CTGCAACTGCGGAAACGCAGCACGAAACTCGGCTTCGTGACGCCAGTGCACCACCACTTTGTGCCCCTGCAGCAGGCCGCAGGCAGCCAGCAGGAAGGCGCCATTGTCGACCCCCACCAGCTTGACACCCGCCTTGGCGGCCTGCCTGAGCAACGCCTGGTAACGTGGCGCCAGCGCCGCGGTGGCCATGGCACTGCG‑‑‑ACCGCCGAACACCACCAGGTAGTCGAATAGGTCAAGGTCGAGCTGATCGGCAATGGCCTCGACCTGCAGCACCGCGCCACTGCTCGACGGTACC  >  NC_002947/4043294‑4043585

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.