New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4079276	43 (1.020)	5 (0.130)	4/242	NT	10.8%	intergenic (‑80/+304)	sdaC/amaC	serine:H+ symport permease/D‑lysine aminotransferase
	?	NC_002947	= 4079317	42 (1.060)					intergenic (‑121/+263)	sdaC/amaC	serine:H+ symport permease/D‑lysine aminotransferase

CCGAGGGCGGCGGGGGTCGATTCTGCAAAGCGTTGTTCAACGCTTGGGGCCTGCTCATTCATTCCGGGTGAAGCTCCACTCGCAAGACTGCAACAGGCTGAGAATGGCGAAATAGACGTTTCGCCCAACTCAACCGGAAAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4079135‑4079276 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggaaaagGGCTTCGCAAGTGCAACCTTTCCGTGCACAATCGCGCCCCTCTTTTCCGGTTGAGTTGGGCGAAACGTCTATTTCGCCATTCTCAGCCTGTTGCAGTCTTGCGAGTGGAGCTTCACCCGGAATGAATGAGCAGGCCCCAAGCGTTGAA  <  NC_002947/4079317‑4079170                                                                                                                                                                                                                                                                                                    CCGAGGGCGGCGGGGGTCGATTCTGCAAAGCGTTGTTCAACGCTTGGGGCCTGCTCATTCATTCCGGGTGAAGCTCCACTCGCAAGACTGCAACAGGCTGAGAATGGCGAAATAGACGTTTCGCCCAACTCAACCGGAAAAGGGCTTCG                                                                                                                                               >  6:39451/1‑149                                              GGGGCCTGCTCATTCATTCCGGGTGAAGCTCCACTCGCAAGACTGCAACAGGCTGAGAATGGCGAAATAGACGTTTCGCCCAACTCAACCGGAAAAGGGCTTCGCAAGTGCAACCTTTCCGTGCACAATCGCGCCCCTCTTTTCCGG                                                                                                    <  5:39451/147‑1                                               GGGCCTTCTCATTCATTCCGGGTGAAGCTCCACTCGCAAGACTGCAACAGGCTGAGAATGGCGAAATAGACGTTTCGCCCAACTCAACCGGAAAAGGGCTTCGCAAGTGCAACCTTTCCGTGCACAATCGCGCCCCTCTTTTCCGGTT                                                                                                  <  5:72531/148‑1                                                        CATTCATTCCGGGTGAAGCTCCACTCGCAAGACTGCAACAGGCTGAGAATGGCGAAATAGACGTTTCGCCCAACTCAACCGGAAAAGGGCTTCGCAAGTGCAACCTTTCCGTGCACAATCGCGCCCCTCTTTTCCGG                                                                                                    <  7:185463/137‑1                                                        CATTCATTCCGGGTGAAGCTCCACTCGCAAGACTGCAACAGGCTGAGAATGGCGAAATAGACGTTTCGCCCAACTCAACCGGAAAAGGGCTTCGCAAGTGCAACCTTTCCGTGCACAATCGCGCCCCTCTTTTCCGG                                                                                                    >  8:185463/1‑137                                                                                                                                          AAAAGGGCTTCGCAAGTGCAACCTTTCCGTGCACAATCGCGCCCCTCTTTTCCGGTTGAGTTGGGCGAAACGTCTATTTCGCCATTCTCAGCCTGTTGCAGTCTTGCGAGTGGAGCTTCACCCGGAATGAATGAGCAGGCCCCAAGCGT      <  6:99781/149‑1                                                                                                                                           AAAGGGCTTCGCAAGTGCAACCTTTCCGTGCACAATCGCGCCCCTCTTTTCCGGTTGAGTGGGGCGAAACGTCTATTTCGCCATTCTCAGCCTGTTGCAGTCTTGCGAGTGGAGCTTCACCCGGAATGAATGAGCAGGCCCCAAGCGTT     <  7:186250/149‑1                                                                                                                                              GGGCTTCGCAAGTGCAACCTTTCCGTGCACAATCGCGCCCCTCTTTTCCGGTTGAGTTGGGCGAAACGTCTATTTCGCCATTCTCAGCCTGTTGCAGTCTTGCGAGTGGAGCTTCACCCGGAATGAATGAGCAGGCCCCAAGCGTTGAA  <  7:102881/149‑1                                                                                                                                                                                                                                                                                                    CCGAGGGCGGCGGGGGTCGATTCTGCAAAGCGTTGTTCAACGCTTGGGGCCTGCTCATTCATTCCGGGTGAAGCTCCACTCGCAAGACTGCAACAGGCTGAGAATGGCGAAATAGACGTTTCGCCCAACTCAACCGGAAAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4079135‑4079276 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggaaaagGGCTTCGCAAGTGCAACCTTTCCGTGCACAATCGCGCCCCTCTTTTCCGGTTGAGTTGGGCGAAACGTCTATTTCGCCATTCTCAGCCTGTTGCAGTCTTGCGAGTGGAGCTTCACCCGGAATGAATGAGCAGGCCCCAAGCGTTGAA  <  NC_002947/4079317‑4079170

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.