New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4079276	43 (1.020)	5 (0.130)	4/242	NT	10.8%	intergenic (‑80/+304)	sdaC/amaC	serine:H+ symport permease/D‑lysine aminotransferase
	?	NC_002947	= 4079317	42 (1.060)					intergenic (‑121/+263)	sdaC/amaC	serine:H+ symport permease/D‑lysine aminotransferase

TTCAACGCTTGGGGCCTGCTCATTCATTCCGGGTGAAGCTCCACTCGCAAGACTGCAACAGGCTGAGAATGGCGAAATAGACGTTTCGCCCAACTCAACCGGAAAAGAGGGGCGCGATTGTGCACGGAAAGGTTGCACTTGCGAAGCCCTTTTCCGAGGAGCGGTTGCACTTGTCTTTACAAGCGGAAGGCATTGCTGGTGTCGATCGGTGGAATGTAGCGGCCTGGGCGCCTGTGGGGCGGCCTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCAGC  >  NC_002947/4079170‑4079460                                                                                                                                                    |                                                                                                                                                ttCAACGCTTGGGGCCTGCTCATTCATTCCGGGTGAAGCTCCACTCGCAAGACTGCAACAGGCTGAGAATGGCGAAATAGACGTTTCGCCCAACTCAACCGGAAAAGAGGGGCGCGATTGTGCACGGAAAGGTTGCACTTGCGAAGCCc                                                                                                                                                <  7:102881‑M2/149‑2 (MQ=255)    aaCGCTTGGGGCCTGCTCATTCATTCCGGGTGAAGCTCCACTCGCAAGACTGCAACAGGCTGAGAATGGCGAAATAGACGTTTCGCCCCACTCAACCGGAAAAGAGGGGCGCGATTGTGCACGGAAAGGTTGCACTTGCGAAGCCcttt                                                                                                                                             <  7:186250‑M2/149‑5 (MQ=255)     aCGCTTGGGGCCTGCTCATTCATTCCGGGTGAAGCTCCACTCGCAAGACTGCAACAGGCTGAGAATGGCGAAATAGACGTTTCGCCCAACTCAACCGGAAAAGAGGGGCGCGATTGTGCACGGAAAGGTTGCACTTGCGAAGCCctttt                                                                                                                                            <  6:99781‑M2/149‑6 (MQ=255)                 tGCTCATTCATTCCGGGTGAAGCTCCACTCGCAAGACTGCAACAGGCTGAGAATGGCGAAATAGACGTTTCGCCCAACTCAACCGGAAAAGAGGGGCGCGATTGTGCACGGAAAGGTTGCACTTGCGAAGCCCTTTTCCGAGGAGCGGt                                                                                                                                >  3:140597/1‑149 (MQ=255)                          attcCGGGTGAAGCTCCACTCGCAAGACTGCAACAGGCTGAGAATGGCGAAATAGACGTTTCGCCCAACTCAACCGGAAAAGAGGGGCGCGATTGTGCACGGAAAGGTTGCACTTGCGAAGCCCTTTTCCGAGGAGCGGTTGCACTTGt                                                                                                                       >  8:91621/1‑149 (MQ=255)                               gggTGAAGCTCCACTCGCAAGACTGCAACAGGCTGAGAATGGCGAAATAGACGTTTCGCCCAACTCAACCGGAAAAGAGGGGCGCGATTGTGCACGGAAAGGTTGCACTTGCGAAGCCCTTTTCCGAGGAGCGGTTGCACTTGTCTTTa                                                                                                                  <  5:99781/149‑1 (MQ=255)                                     aGCTCCACTCGCAAGACTGCAACAGGCTGAGAATGGCGAAATAGACGTTTCGCCCAACTCAACCGGAAAAGAGGGGCGCGATTGTGCACGGAAAGGTTGCACTTGCGAAGCCCTTTTCCGAGGAGCGGTTGCACTTGTCTTTACAAGCg                                                                                                            >  1:220952/1‑149 (MQ=255)                                      gCTCCACTCGCAAGACTGCAACAGGCTGAGAATGGCGAAATAGACGTTTCGCCCAACTCAACCGGAAAAGAGGGGCGCGATTGTGCACGGAAAGGTTGCACTTGCGAAGCCCTTTTCCGAGGAGCGGTTGCACTTGTCTTTACAAGCg                                                                                                            >  7:151201/1‑148 (MQ=255)                                       cTCCACTCGCAAGACTGCAACAGGCTGAGAATGGCGAAATAGACGTTTCGCCCAACTCAACCGGAAAAGAGGGGCGCGATTGTGCACGGAAAGGTTGCACTTGCGAAGCCCTTTTCCGAGGAGCGGTTGCACTTGTCTTTACAAGCGGa                                                                                                          <  6:157075/149‑1 (MQ=255)                                         ccACTCGCAAGACTGCAACAGGCTGAGAATGGCGAAATAGACGTTTCGCCCAACTCAACCGGAAAAGAGGGGCGCGATTGTGCACGGAAAGGTTGCACTTGCGAAGCCCTTTTCCGAGGAGCGGTTGCACTTGTCTTTACAAGCGGAAg                                                                                                        >  1:61347/1‑149 (MQ=255)                                          cACTCGCAAGACTGCAACAGGCTGAGAATGGCGAAATAGACGTTTCGCCCAACTCAACCGGAAAAGAGGGGCGCGATTGTGCACGGAAAGGTTGCACTTGCGAAGCCCTTTTCCGAGGAGCGGTTGCACTTGTCTTTACAAGCGGAAgg                                                                                                       >  5:186614/1‑149 (MQ=255)                                               gCAAGACTGCAACAGGCTGAGAATGGCGAAATAGACGTTTCGCCCAACTCAACCGGAAAAGAGGGGCGCGATTGTGCACGGAAAGGTTGCACTTGCGAAGCCCTTTTCCGAGGAGCGGTTGCACTTGTCTTTACAAGCGGAAGGCAtt                                                                                                   <  6:186614/148‑1 (MQ=255)                                                cAAGACTGCAACAGGCTGAGAATGGCGAAATAGACGTTTCGCCCAACTCAACCGGAAAAGAGGGGCGCGATTGTGCACGGAAAGGTTGCACTTGCGAAGCCCTTTTCCGAGGAGCGGTTGCACTTGTCTTTACAAGCGGAAGGCATTg                                                                                                  <  8:241015/148‑1 (MQ=255)                                                 aaGACTGCAACAGGCTGAGAATGGCGAAATAGACGTTTCGCCCAACTCAACCGGAAAAGAGGGGCGCGATTGTGCACGGAAAGGTTGCACTTGCGAAGCCCTTTTCCGAGGAGCGGTTGCACTTGTCTTTACAAGCGGAAGGCATTGCt                                                                                                <  7:91621/149‑1 (MQ=255)                                                 aaGACTGCAACAGGCTGAGAATGGCGAAATAGACGTTTCGCCCAACTCAACCGGAAAAGAGGGGCGCGATTGTGCACGGAAAGGTTGCACTTGCGAAGCCCTTTTCCGAGGAGCGGTTGCACTTGTCTTTACAAGCGGAAGGCATTGCt                                                                                                >  2:189259/1‑149 (MQ=255)                                                  aGACTGCAACAGGCTGAGAATGGCGAAATAGACGTTTCGCCCAACTCAACCGGAAAAGAGGGGCGCGATTGTGCACGGAAAGGTTGCACTTGCGAAGCCCTTTTCCGAGGAGCGGTTGCACTTGTCTTTACAAGCGGAAGGCATTGCTg                                                                                               <  8:102881/149‑1 (MQ=255)                                                   gACTGCAACAGGCTGAGAATGGCGAAATAGACGTTTCGCCCAACTCAACCGGAAAAGAGGGGCGCGATTGTGCACGGAAAGGTTGCACTTGCGAAGCCCTTTTCCGAGGAGCGGTTGCACTTGTCTTTACAAGCGGa                                                                                                          <  2:94420/137‑1 (MQ=255)                                                   gACTGCAACAGGCTGAGAATGGCGAAATAGACGTTTCGCCCAACTCAACCGGAAAAGAGGGGCGCGATTGTGCACGGAAAGGTTGCACTTGCGAAGCCCTTTTCCGAGGAGCGGTTGCACTTGTCTTTACAAGCGGa                                                                                                          >  1:94420/1‑137 (MQ=255)                                                        cAACAGGCTGAGAATGGCGAAATAGACGTTTCGCCCAACTCAACCGGAAAAGAGGGGCGCGATTGTGCACGGAAAGGTTGCACTTGCGAAGCCCTTTTCCGAGGAGCGGTTGCACTTGTCTTTACAAGCGGAAGGCATTGCTGGTGTc                                                                                          >  6:212781/1‑148 (MQ=255)                                                            aGGCTGAGAATGGCGAAATAGACGTTTCGCCCAACTCAACCGGAAAAGAGGGGCGCGATTGTGCACGGAAAGGTTGCACTTGCGAAGCCCTTTTCCGAGGAGCCGTTGCACTTGTCTTTACAAGCGGAAGGCATTGCTGGTGTCGATCg                                                                                     <  1:189259/149‑1 (MQ=255)                                                              gCTGAGAATGGCGAAATAGACGTTTCGCCCAACTCAACCGGAAAAGAGGGGCGCGATTGTGCACGGAAAGGTTGCACTTGCGAAGCCCTTTTCCGAGGAGCGGTTGCACTTGTCTTTACAAGCGGAAGGCATTGCTGGTGTCGATCGGt                                                                                   >  4:115035/1‑149 (MQ=255)                                                                  agaATGGCGAAATAGACGTTTCGCCCAACTCAACCGGAAAAGAGGGGCGCGATTGTGCACGGAAAGGTTGCACTTGCGAAGCCCTTTTCCGAGGAGCGGTTGCACTTGTCTTTACAAGCGGAAGGCATTGCTGGTGTAGATCTCTGGaa                                                                               >  2:4048/1‑149 (MQ=255)                                                                   gaATGGCGAAATAGACGTTTCGCCCAACTCAACCGGAAAAGAGGGGCGCGATTGTGCACGGAAAGGTTGCACTTGCGAAGCCCTTTTCCGAGGAGCGGTTGCACTTGTCTTTACAAGCGGAAGGCATTGCTGGTGTCGATCGGTGGaa                                                                               <  3:94653/148‑1 (MQ=255)                                                                        gCGAACTAGACGGTTCGCCCAACTCAACCCGAAAAGAGGGGCGCGTTTGTGCACGGACAGGTGGCACTTGCGTCGCCCTTTTCCGAGGAGCGGTTGCACTTGTCTTTACAAGCGGAAGGCATTGCTGGGGTCGAGCGGTGGAATGTAg                                                                          <  8:222723/148‑1 (MQ=255)                                                                            aaTAGACGTTTCGCCCAACTCAACCGG‑AAAGAGGGGCGCGATTGTGCACGGAAAGGTTGCACTTGCGAAGCCCTTTTCAGAGGAGCGGTTGCACTTGTCTTTACAAGCGGAAGTCATTGCTGGTGTCGATCGGTGGAATGTAGCGGcat                                                                    >  6:134828/1‑147 (MQ=255)                                                                               aGACGTTTCGCCCAACTCAACCGGAAAAGAGGGGCGCGATTGTGCACGGAAAGGTTGCACTTGCGAAGCCCTTTTCCGAGGAGCGGTTGCACTTGTCTTTACAAGCGGAAGGCATTGCTGGTGTCGATCGGTGGAATGTAGCGGCCTgg                                                                  >  6:125975/1‑149 (MQ=255)                                                                                        gCCCAACTCAACCGGAAAAGAGGGGCGCGATTGTGCACGGAAAGGTTGCACTTGCGAAGCCCTTTTCCGAGGAGCGGTTGCACTTGTCTTTACAAGCGGAAGGCATTGCTGGTGTCGATCGGTGGAATGTAGCGGCCTGGGCGCCtgt                                                          <  1:4048/148‑1 (MQ=255)                                                                                           cAACTCAACCGGAAAAGAGGGGCGCGATTGTGCACGGAAAGGTTGCACTTGCGAAGCCCTTTTCCGAGGAGCGGTTGCACTTGTCTTTACAAGCGGAAGGCATTGCTGGTGTCGATCGGTGGAATGTAGCGGCCTGGGCGCCTGTgggg                                                      <  5:125975/149‑1 (MQ=255)                                                                                                 aaCCGGAAAAGAGGGGCGCGATTGTGCACGGAAAGGTTGCACTTGCGAAGCCcttttccggttgagttgggcgaaacgtctatttcgccattctcagcctgttgcagtcttgcgagtggagcttcacccggaatgaatgagaaggccc                                                 <  5:72531‑M2/148‑97 (MQ=255)                                                                                                 aaCCGGAAAAGAGGGGCGCGATTGTGCACGGAAAGGTTGCACTTGCGAAGCCCTTTTCCGAGGAGCGGTTGCACTTGTCTTTACAAGCGGAAGGCATTGCTGGTGTCGATCGGTGGAATGTAGCGGCCTGGGCGCCTGTGGGGCGGCCt                                                >  2:53648/1‑149 (MQ=255)                                                                                                 aaCCGGAAAAGAGGGGCGCGATTGTGCACGGAAAGGTTGCACTTGCGAAGCCCTTTTCCGAGGAGCGGTTGCACTTGTCTTTACAAGCGGAAGGCATTGCTGGTGTCGATCGGTGGAATGTAGCGGCCTGGGCGCCTGTGGGGCGGCCt                                                >  7:48081/1‑149 (MQ=255)                                                                                                   ccGGAAAAGAGGGGCGCGATTGTGCACGGAAAGGTTGCACTTGCGAAGCCcttttccggttgagttgggcgaaacgtctatttcgccattctcagcctgttgcagtcttgcgagtggagcttcacccggaatgaatgagcaggcccc                                                <  5:39451‑M2/147‑98 (MQ=255)                                                                                                   ccGGAAAAGAGGGGCGCGATTGTGCACGGAAAGGTTGCACTTGCGAAGCCcttttccggttgagttgggcgaaacgtctatttcgccattctcagcctgttgcagtcttgcgagtggagcttcacccggaatgaatg                                                          <  7:185463‑M2/137‑88 (MQ=255)                                                                                                   ccGGAAAAGAGGGGCGCGATTGTGCACGGAAAGGTTGCACTTGCGAAGCCcttttccggttgagttgggcgaaacgtctatttcgccattctcagcctgttgcagtcttgcgagtggagcttcacccggaatgaatg                                                          >  8:185463‑M2/1‑50 (MQ=255)                                                                                                   ccGGAAAAGAGGGGCGCGATTGTGCACGGAAAGGTTGCACTTGCGAAGCCCTTTTCCGAGGAGCGGTTGCACTTGTCTTTACAAGCGGAAGGCATTGCTGGTGTCGATCGGTGGAATGTAGCGGCCTGGGCGCCTGTGGGGCGGCCtgt                                              <  5:212781/149‑1 (MQ=255)                                                                                                    cGGAAAAGAGGGGCGCGATTGTGCACGGAAAGGTTGCACTTGCGAAGCCCTTTTCCGAGGAGCGGTTGCACTTGTCTTTACAAGCGGAAGGCATTGCTGGTGTCGATCGGTGGAATGTAGCGGCCTgg                                                                  <  4:118158/128‑1 (MQ=255)                                                                                                    cGGAAAAGAGGGGCGCGATTGTGCACGGAAAGGTTGCACTTGCGAAGCCCTTTTCCGAGGAGCGGTTGCACTTGTCTTTACAAGCGGAAGGCATTGCTGGTGTCGATCGGTGGAATGTAGCGGCCTgg                                                                  >  3:118158/1‑128 (MQ=255)                                                                                                         aaGAGGGGCGCGATTGTGCACGGAAAGGTTGCACTTGCGAAGCCCTTTTCCGAGGAGCGGTTGCACTTGTCTTTACAAGCGGAAGGCATTGCTGGTGTCGATCGGTGGAATGTAGCGGCCTGGGCGCCTGTGGGGCGGCCTGTGGGAGc                                        <  8:151201/149‑1 (MQ=255)                                                                                                           gagGGGCGCGATTGTGCACGGAAAGGTTGCACTTGCGAAGCCCTTTTCCGAGGAGCGGTTGCACTTGTCTTTACAAGCGGAAGGCATTGCTGGTGTCGATCGGTGGAATGTAGCGGCCTGGGCGCCTGTGGGGCGGCCTGTGGGAGCgg                                      >  4:5990/1‑149 (MQ=255)                                                                                                            agGGGCGCGATTGTGCACGGAAAGGTTGCACTTGCGAAGCCCTTTTCCGAGGAGCGGTTGCACTTGTCTTTACAAGCGGAAGGCATTGCTGGTGTCGATCGGTGGAATGTAGCGGCCTGGGCGCCTGTGGGGCGGCCTGTGGGAGCGGc                                     <  3:115035/149‑1 (MQ=255)                                                                                                               ggCGCGATTGTGCACGGAAAGGTTGCACTTGCGAAGCCCTTTTCCGAGGAGCGGTTGCACTTGTCTTTACAAGCGGAAGGCATTGCTGGTGTCGATCGGTGGAATGTAGCGGCCTGGGCGCCTGTGGGGCGGCCTGTGGGAGCGGCCtt                                  <  8:48081/149‑1 (MQ=255)                                                                                                                         tgCACGGAAAGGTTGCACTTGCGAAGCCCTTTTCCGAGGAGCGGTTGCACTTGTCTTTACAAGCGGAAGGCATTGCTGGTGTCGATCGGTGGAATGTAGCGGCCTGGGCGCCTGTGGGGCGGCCTGTGGGAGCGGCCTTGCGTCGCGa                         <  2:123920/148‑1 (MQ=255)                                                                                                                              ggAAAGGTTGCACTTGCGAAGCCCTTTTCCGAGGAGCGGTTGCACTTGTCTTTACAAGCGGAAGGCATTGCTGGTGTCGATCGGTGGAATGTAGCGGCCTGGGCGCCTGTGGGGCGGCCTGTGGGAGCGGCCTTGCGTCGCGATAGGGc                   <  2:220952/149‑1 (MQ=255)                                                                                                                               gAAAGGTTGCACTTGCGAAGCCCTTTTCCGAGGAGCGGTTGCACTTGTCTTTACAAGCGGAAGGCATTGCTGGTGTCGATCGGTGGAATGTAGCGGCCTGGGCGCCTGTGGGGCGGCCTGTGGGAGCGGCCTTGCGTCGCGATAGGGcc                  <  1:53648/149‑1 (MQ=255)                                                                                                                                       gCACTTGCGAAGCCCTTTTCCGAGGAGCGGTTGCACTTGTCTTTACAAGCGGAAGGCATTGCTGGTGTCGATCGGTGGAATGTAGCGGCCTGGGCGCCTGTGGGGCGGCCTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGc           <  4:140597/148‑1 (MQ=255)                                                                                                                                         aCTTGCGAAGCCCTTTTCCGAGGAGCGGTTGCACTTGTCTTTACAAGCGGAAGGCATTGCTGgtgt                                                                                           <  1:178597/66‑1 (MQ=255)                                                                                                                                         aCTTGCGAAGCCCTTTTCCGAGGAGCGGTTGCACTTGTCTTTACAAGCGGAAGGCATTGCTGgtgt                                                                                           >  2:178597/1‑66 (MQ=255)                                                                                                                                              cGAAGCCcttttccggttgagttgggcgaaacgtctatttcgccattctcagcctgttgcagtcttgcgagtggagcttcacccggaatgaatgagcaggccccaagcgttgaacaacgctttgcagaatcgacccccgccgccctcgg   >  6:39451‑M2/1‑7 (MQ=255)                                                                                                                                              cGAAGCCCTTTTCCGAGGAGCGGTTGCACTTGTCTTTACAAGCGGAAGGCATTGCTGGTGTCGATCGGTGGAATGTAGCGGCCTGGGCGCCTGTGGGGCGGCCTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCa    <  3:5990/148‑1 (MQ=255)                                                                                                                                               gAAGCCCTTTTCCGAGGAGCTGTTGCACTTGTCTTTACAAGCGGAAGGCATTGCTGGTGTCGATCGGTGGAATGTAGCGGCCTGGGCGCCTGTGGGGCGGCCTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCTTTGCGGccctatc  <  2:61347/149‑5 (MQ=255)                                                                                                                                                    |                                                                                                                                                TTCAACGCTTGGGGCCTGCTCATTCATTCCGGGTGAAGCTCCACTCGCAAGACTGCAACAGGCTGAGAATGGCGAAATAGACGTTTCGCCCAACTCAACCGGAAAAGAGGGGCGCGATTGTGCACGGAAAGGTTGCACTTGCGAAGCCCTTTTCCGAGGAGCGGTTGCACTTGTCTTTACAAGCGGAAGGCATTGCTGGTGTCGATCGGTGGAATGTAGCGGCCTGGGCGCCTGTGGGGCGGCCTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCAGC  >  NC_002947/4079170‑4079460

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.