New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4116100 = | 61 (1.450) | 4 (0.100) | 4/248 | NT | 7.1% | coding (486/2187 nt) | ycaO | ribosomal protein S12 methylthiotransferase accessory factor |
? | NC_002947 | 4116133 = | 46 (1.130) | coding (453/2187 nt) | ycaO | ribosomal protein S12 methylthiotransferase accessory factor |
CACGGTAAAAAAGGTGGTGCAGACCGGCCCTGAGTTCGTGATCGAAGTGGTCGACAACCTCGATGCCGATGCCCAAGGGTTGCTGATGCCGGTGTCGGACACCAGCACCTATATCCCCGGCAAGGACCTGCCGCTGGAGCAGACCATTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4116250‑4116100 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgccGGGGATATAGGTGCTGGTGTCCGACACCGGCATCAGCAACCCTTGGGCATCGGCATCGAGGTTGTCGACCACTTCGATCACGAACTCAGGGCCGGTCTGCACCACCTTTTTTACCGTGCAGCGGTCGATGGAGCGCAGGATGCC > NC_002947/4116133‑4116276 CACGGTAAAAAAGGTGGTGCAGACCGGCCCTGAGTTCGTGATCGAAGTGGTCGACAACCTCGATGCCGATGCCCAAGGGTTGCTGATGCCGGTGTCGGACACCAGCACCTATATCCCCGGCAAGGACCTGCCGCTGGAGCAGACCATT < 4:77640/148‑1 CGGTAAAAAAGGTGGTGCAGACCGGCCCTGAGTTCGTGATCGAAGTGGTCGACAACCTCGATGCCGATGCCCAAGGGTTGCTGATGCCGGTGTCGGACACCAGCACCTATATCCCCGGCAAGGACCTGCCGCTGGAGCAGACCATTGCC < 8:194990/149‑1 TTCGTGATCGAAGTGGTCGACAACCTCGATGCCGATGCCCAAGGGTTGCTGATGCCGGTGTCGGACACCAGCACCTATATCCCCGGCAAGGACCTGCCGCTGGAGCAGACCATTGC < 1:95660/116‑1 TTCGTGATCGAAGTGGTCGACAACCTCGATGCCGATGCCCAAGGGTTGCTGATGCCGGTGTCGGACACCAGCACCTATATCCCCGGCAAGGACCTGCCGCTGGAGCAGACCATTGC > 2:95660/1‑116 TCCCCGGCAAGGACCTGCCGCTGGAGCAGACCATTGCCGGGGATATAGGTGCTGGTGTCCGACACCGGCATCAGCAACCCTTG > 3:77064/1‑83 TCCCCGGCAAGGACCTGCCGCTGGAGCAGACCATTGCCGGGGATATAGGTGCTGGTGTCCGACACCGGCATCAGCAACCCTTG < 4:77064/83‑1 CCGGCAAGGACCTGCCGCTGGAGCAGACCATTGCCGGGGATATAGGTGCTGGTGTCCGACACCGGCATCAGCAACCCTTGGGCATCGGCATCGAGGTTGTCGACCACTTCGATCACGAACTCAGGGCCGGTCTGCACCACCTTagagcg > 1:136807/1‑143 CCGGCAAGGACCTGCCGCTGGAGCAGACCATTGCCGGGGATATAGGTGCTGGTGTCCGACACCGGCATCAGCAACCCTTGGGCATCGGCATCGAGGTTGTCGACCACTTCGATCACGAACTCAGGGCCGGTCTGCACCACCT < 2:136807/142‑1 TTGCCGGGGATATAGGTGCTGGTGTCCGACACCGGCATCAGCAACCCTTGGGCATCGGCATCGAGGTTGTCGACCACTTCGATCACGAACTCAGGGCCGGTCTGCACCACCTTTTTTACCGTGCAGCGGTCGATGGAGCGCAGGATGCC > 2:30880/1‑149 CACGGTAAAAAAGGTGGTGCAGACCGGCCCTGAGTTCGTGATCGAAGTGGTCGACAACCTCGATGCCGATGCCCAAGGGTTGCTGATGCCGGTGTCGGACACCAGCACCTATATCCCCGGCAAGGACCTGCCGCTGGAGCAGACCATTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4116250‑4116100 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgccGGGGATATAGGTGCTGGTGTCCGACACCGGCATCAGCAACCCTTGGGCATCGGCATCGAGGTTGTCGACCACTTCGATCACGAACTCAGGGCCGGTCTGCACCACCTTTTTTACCGTGCAGCGGTCGATGGAGCGCAGGATGCC > NC_002947/4116133‑4116276 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |