New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4253409	43 (1.020)	3 (0.070)	3/246	NT	6.5%	coding (270/1407 nt)	rocE	amino acid permease RocE
	?	NC_002947	= 4253453	45 (1.120)					coding (226/1407 nt)	rocE	amino acid permease RocE

CGAACAGCACCACCACGAACAGCGCCGACCAGTACCAGATCGGCACCTCCGGGAACCAGCGGGTCATCAACATGCCGGCAGCGGTGAACTCCAGGCCTACGGTGGTGGCCCAGCTCATCCAGTACACCCAGCCGATCATGAACCCGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4253261‑4253409 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggtgTCCGGTTCGTTTCAGGCCCACGCCACCAAATACATTGGCCCGGCCACCGGGTTCATGATCGGCTGGGTGTACTGGATGAGCTGGGCCACCACCGTAGGCCTGGAGTTCACCGCTGCCGGCATGTTGATGACCCGCTGGTTCCCGGAG  <  NC_002947/4253453‑4253307                                                                                                                                                                                                                                                                                                          CGAACAGCACCCCCACGAACAGCGCCGACCAGTACCAGATCGGCACCTCCGGGAACCAGCGGGTCATCAACATGCCGGCAGCGGTGAACTCCAGGCCTACGGTGGTGGCCCAGCTCATCCAGTACACCCAGCCGATCATGCACCCGGTG                                                                                                                                                     >  5:57208/1‑149                                        TCGGCACCTCCGGGAACCAGCGGGTCATCAACATGCCGGCAGCGGTGAACTCCAGGCCTACGGTGGTGGCCCAGCTCATCCAGTACACCCAGCCGATCATGAACCCGGTGTCCGGTTCGTTTCAGGCCCACGCCACCAAATACATTGGC                                                                                                              >  2:5369/1‑149                                                  CGGGAACCAGCGGGTCATCAACATGCCGGCAGCGGTGAACTCCAGGCCTACGGTGGTGGCCCAGCTCATCCAGTACACCCAGCCGATCATGAACCCGGTGTCCGGTTCGTTTCAGGCCCACGCCACCAAATACATTGGCCCGGCCACCG                                                                                                    <  1:5369/149‑1                                                  CGGGAACCAGCGGGTCATCAACATGCCGGCAGCGGTGAACTCCAGGCCTACGGTGGTGGCCCAGCTCATCCAGTACACCCAGCCGATCATGAACCCGGTGTCCGGTTCGTTTCAGGCCCACGCCACCAAATACATTGGCCCGGCCACC                                                                                                     <  1:82287/148‑1                                                                                                                                                    TGTCCGGTTCTTTTCAGGCCCACGCCACCAAATACATTGGCCGGGCCACCGGGTTCATGATCGGCTGGGTGTACTGGATGAGCTGGGCCACCACCGTAGGCCTGGAGTTCACCGCTGCCGGCATGTTGATGACCCGCTGGTTCCCGGAG  <  1:210998/149‑1                                                                                                                                                                                                                                                                                                          CGAACAGCACCACCACGAACAGCGCCGACCAGTACCAGATCGGCACCTCCGGGAACCAGCGGGTCATCAACATGCCGGCAGCGGTGAACTCCAGGCCTACGGTGGTGGCCCAGCTCATCCAGTACACCCAGCCGATCATGAACCCGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4253261‑4253409 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggtgTCCGGTTCGTTTCAGGCCCACGCCACCAAATACATTGGCCCGGCCACCGGGTTCATGATCGGCTGGGTGTACTGGATGAGCTGGGCCACCACCGTAGGCCTGGAGTTCACCGCTGCCGGCATGTTGATGACCCGCTGGTTCCCGGAG  <  NC_002947/4253453‑4253307

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.