New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4253409	43 (1.020)	3 (0.070)	3/246	NT	6.5%	coding (270/1407 nt)	rocE	amino acid permease RocE
	?	NC_002947	= 4253453	45 (1.120)					coding (226/1407 nt)	rocE	amino acid permease RocE

CTCCGGGAACCAGCGGGTCATCAACATGCCGGCAGCGGTGAACTCCAGGCCTACGGTGGTGGCCCAGCTCATCCAGTACACCCAGCCGATCATGAACCCGGTGGCCGGGCCAATGTATTTGGTGGCGTGGGCCTGAAACGAACCGGACACCGGCATCTGCACCGACAGCTCGCCCAGGCAGACCATCACCAGGTACATCAGCAAGCCTGCGACCAGGTAAGCCAGGATCGCGCCCACCGGCCCGCCCTGATTGATGGTTACGCCCGAGCCCATGAACAGGCCGGTTCC  >  NC_002947/4253307‑4253594                                                                                                                                                   |                                                                                                                                              cTCCGGGAACCAGCGGGTCATCAACATGCCGGCAGCGGTGAACTCCAGGCCTACGGTGGTGGCCCAGCTCATCCAGTACACCCAGCCGATCATGAACCCGGTGGCCCGGCCAATGTATTTGGTGGCGTGGGCCTGAAAAGAACCGGAca                                                                                                                                             <  1:210998‑M2/149‑3 (MQ=255)           cAGCGGGTCATCAACATGCCGGCAGCGGTGAACTCCAGGCCTACGGTGGTGGCCCAGCTCATCCAGTACACCCAGCCGATCATGAACCCGGTGGCCGGGCCAATGTATTTGGTGGCGTGGGCCTGAAACGAACCGGACACCGGCATCTg                                                                                                                                   >  2:151933/1‑149 (MQ=255)            aGCGGGTCATCAACATGCCGGCAGCGGTGAACTCCAGGCCTACGGTGGTGGCCCAGCTCATCCAGTACACCCAGCCGATCATGAACCCGGTGGCCGGGCCAATGTATTTGGTGGCGTGGGCCTGAAACGAACCGGACACCGGCATCTGc                                                                                                                                  <  7:173050/149‑1 (MQ=255)             gCGGGTCATCAACAAGCCGGCAGCGGTGAACTCCAGGCCTACGGTGGTGGCCCAGCTCATCCAGTACACCCAGCCGATCATGAACCCGGTGGCCGGGCCAATGTATTTGGTGGCGTGGGCCTGAAACGAACCGGACACCGGCATCTGCa                                                                                                                                 >  1:155554/1‑149 (MQ=255)              cGGGTCATCAACATGCCGGCAGCGGTGAACTCCAGGCCTACGGTGGTGGCCCAGCTCATCCAGTACACCCAGCCGATCATGAACCCGGTGGCCGGGCCAATGTATTTGGTGGCGTGGGCCTGAAACGAACCGGACACCGGCATCTGCAc                                                                                                                                <  7:96858/149‑1 (MQ=255)                  tcatcaACATGCCGGCAGCGGTGAACTCCAGGCCTACGGTGCTGGCCCAGCTCATCCAGTACACCCAGCCGATCATGAACCCGGTGGCCGGGCCAATGTATTTGGTGGCGTGGGCCTGAAACGAACCGGACACCGGCATCTGCACCGAc                                                                                                                            <  5:234734/149‑1 (MQ=255)                              cGGCAGCGGTGAACTCCAGGCCTACGGTGGTGGCCCAGCTCATCCAGTACACCCAGCCGATCATGAACCCGGTGGCCGGGCCAATGTATTTGGTGGCGTGGGGCTGAAACGAACCGGACACCGGCATCTGCACCGACAGCTCGCCCAgg                                                                                                                <  2:155554/149‑1 (MQ=255)                              cGGCAGCGGTGAACTCCAGGCCTACGGTGGTGGCCCAGCTCATCCAGTACACCCAGCCGATCATGAACCCGGTGGCCGGGCCAATGTATTTGGTGGCGTGGGCCTGAAACGAACCGGACACCGGCATCTGCACCGACAGCTCGCCCAgg                                                                                                                >  4:206124/1‑149 (MQ=255)                                            tCCAGGCCTACGGTGGTGGCCCAGCTCATCCAGTACACCCAGCCGATCATGAACCCGGTGGCCGGGCCAATGTATTTGGTGGCGTGGGCCTGAAACGAACCGGACACCGGCATCTGCACCGACAGCTCGCCCAGGCAGACCATCACCAg                                                                                                  >  1:105560/1‑149 (MQ=255)                                            tCCAGGCCTACGGTGGTGGCCCAGCTCATCCAGTACACCCAGCCGATCATGAACCCGGTGGCCGGGCCAATGTATTTGGTGGCGTGGGCCTGAAACGAACCGGACACCGGCATCTGCACCGACAGCTCGCCCAGGCAGACCATCACCAg                                                                                                  >  6:179050/1‑149 (MQ=255)                                            tCCAGGCCTACGGTGGTGGCCCAGCTCATCCAGTACACCCAGCCGATCATGAACCCGGTGGCCGGGCCAATGTATTTGGTGGCGTGGGCCTGAAACGAACCGGACACCGGCATCTGCACCGACAGCTCGCCCAGGCAGACCATCACCAg                                                                                                  >  6:175132/1‑149 (MQ=255)                                            tCCAGGCCTACGGTGGTGGCCCAGCTCATCCAGTACACCCAGCCGATCATGAACCCGGTGGCCGGGCCAATGTATTTGGTGGCGTGGGCCTGAAACGAACCGGACACCGGCATCTGAACCGACAGCTCGCCCAgg                                                                                                                >  1:136486/1‑135 (MQ=255)                                            tCCAGGCCTACGGTGGGGGCCCAGCTCATCCAGTCCACCCAGCCTATCATGAACCGGGGGGCCGGGCCAATGTATTTGGGGGCGTGGGCCTGAAACGAACCGGACACCGGCATCTGCACCGACAGCTCGCCCCgg                                                                                                                <  2:136486/135‑1 (MQ=255)                                              cAGGCCTACGGTGGTGGCCCAGCTCATCCAGTACACCCAGCCGATCATGAACCCGGTGGCCGGGCCAATGTATTTGGTGGCGTGGGCCTGAAACGAACCGGACACCGGCATCTGCACCGACAGCTCGCCCAGGCAGACCATCACCAgg                                                                                                 >  7:37833/1‑148 (MQ=255)                                               aGGCCTACGGTGGTGGCCCAGCTCATCCAGTACACCCAGCCGATCATGAACCCGGTGGCCGGGCCAATGTATTTGGTGGCGTGGGCCTGAAACGAACCGGACACCGGCATCTGCACCGACAGCTCGCCCAGGCAGACCATCACCAGGTa                                                                                               >  5:99761/1‑149 (MQ=255)                                                  ccTACGGTGGTGGCCCAGCTCATCCAGTACACCCAGCCGATCATGAACCCGGTGGCCTGGCCAATGTATTTGGTGGCGTGGGCCTGAAACGAACCGGACACCGGCATCTGCACCGACAGCTCGCCCAGGCAGACCATCACCAGGTACAt                                                                                            <  6:99761/149‑1 (MQ=255)                                                    tACGGTGGTGGCCCAGCTCATCCAGTACACCCAGCCGATCATGAACCCGGTGGCCGGGCCAATGTATTTGGTGGCGTGGGCCTGAAACGAACCGGACACCGGCATCTGCACCGAc                                                                                                                            >  8:10013/1‑115 (MQ=255)                                                      cGGTGGTGGCCCAGCTCATCCAGTACACCCAGCCGATCATGAACCCGGTGGCCGGGCCAATGTATTTGGTGGCGTGGGCCTGAAACGAACCGGACACCGGCATCTGCACCGACAGCTCGCCCAGGCAGACCATCACCAGGTACATCAg                                                                                         <  3:206124/148‑1 (MQ=255)                                                              gCCCAGCTCATCCAGTACACCCAGCCGATCATGAACCCGGTGGCCGGGCCAATGTATTTGGTGGCGTGGGCCTGAAACGAACCGGACACCGGCATCTGCACCGACAGCTCGCCCAGGCAGTCCATCACCAGGTACATCAGCAAGCCTGc                                                                                <  1:151933/149‑1 (MQ=255)                                                              gCCCAGCTCATCCAGTACACCCAGCCGATCATGAACCCGGTGGCCGGGCCAATGTATTTGGTGGCGTGGGCCTGAAACGAACCGGACACCGGCATCTGCACCGACAGCTCGCCCAGGCAGACCATCACCAGGTACATCAGCAAGCCTGc                                                                                >  3:221190/1‑149 (MQ=255)                                                                ccAGCTCATCCAGTACACCCAGCCGATCATGAACCCGGTGGCCGGGCCAATGTATTTGGTGGCGTGGGCCTGAAACGAACCGGACACCGGCATCTGCACCGACAGCTCGCCCAGGCAGACCATCACCAGGTACATCAGCAAGCCTGCGa                                                                              >  1:210252/1‑149 (MQ=255)                                                                    cTCATCCAGTACACCCAGCCGATCATGAACCCGGTGGCCGGGCCAATGTATTTGGTGGCGTGGGCCTGAAACGAACCGGACACCGGCATCTGCACCGACAGCTCGCCCAGGCAGACCATCACCAGGTACATCAGCAAGCCTGCGACCAg                                                                          <  5:179050/149‑1 (MQ=255)                                                                    cTCATCCAGTACACCCAGCCGATCATGAACCCGGTGGCCGGGCCAATGTATTTGGTGGCGTGGGCCTGAAACGAACCGGACACCGGCATCTGCACCGACAGCTCGCCCAGGCAGACCATCACCAGGTACATCAGCAAGCCTGCGACCAg                                                                          <  5:175132/149‑1 (MQ=255)                                                                      cATCCAGTACACCCAGCCGATCATGAACCCGGTGGCCGGGCCAATGTATTTGGTGGCGTGGGCCTGAAACGAACCGGACACCGGCATCTGCACCGACAGCTCGCCCAGGCAGACCATCACCAGGTACATCAGCAAGCCTGCGACCAgg                                                                         >  5:255881/1‑148 (MQ=255)                                                                       aTCCAGTACACCCAGCCGATCATGAACCCGGTGGCCGGGCCAATGTATTTGGTGGCGTGGGCCTGAAACGAACCGGACACCGGCATCTGCACCGACAGCTCGCCCAGGCAGACCATCACCAGGTACATCAGCAAGCCTGCGACCAg                                                                          <  6:169022/146‑1 (MQ=255)                                                                       aTCCAGTACACCCAGCCGATCATGAACCCGGTGGCCGGGCCAATGTATTTGGTGGCGTGGGCCTGAAACGAACCGGACACCGGCATCTGCACCGACAGCTCGCCCAGGCAGACCATCACCAGGTACATCAGCAAGCCTGCGACCAGGt                                                                        >  1:227011/1‑148 (MQ=255)                                                                         ccAGTACACCCAGCCGATCATGAACCCGGTGGCCGGGCCAATGTATTTGGTGGCGTGGGCCTGAAACGAACCGGACACCGGCATCTGCACCGACAGCTCGCCCAGGCAGACCATCACCAGGTACATCAGCAAGCCTGCGACCAGGTAAg                                                                     >  3:226686/1‑149 (MQ=255)                                                                                acCCAGCCGATCATGAACCCGGTGGCCGGGCCAATGTATTTGGTGGCGTGGGCCTGAAACGAACCGGACACCGGCATCTGCACCGACAGCTCGCCCAGGCAGACCATCACCAGGTACATCAGCAAGCCTGCGACCAGGTAAGCCAGGAt                                                              >  8:2863/1‑149 (MQ=255)                                                                                  ccAGCCGATCATGAACCCGGTGGCCGGGCCAATGTATTTGGTGGCGTGGGCCTGAAACGAACCGGACACCGGCATCTGCACCGACAGCTCGCCCAGGCAGACCATCACCAGGTACATCAGCAAGCCTGCGACCAGGTAAGCCAGGATcg                                                            >  4:58809/1‑149 (MQ=255)                                                                                    aGCCGATCATGAACCCGGTGGCCGGGCCAATGTATTTGGTGGCGTGGGCCTGAAACGAACCGGACACCGGCATCTGCACCGACAGCTCGCCCAGGCAGACCATCACCAGGTACATCAGCAAGCCTGCGACCAGGTAAGCCAGGATcgcg                                                          <  4:226686/149‑1 (MQ=255)                                                                                        gATCATGAACCCGGTGGCCGGGCCAATGTATTTGGTGGCGTGGGCCTGAAACGAACCGGACACCGGCATCTGCACCGACAGCTCGCCCAGGCAGACCATCACCAGGTACATCAGCAAGCCTGCGACCAGGTAAGCCAGGATCGCGCCCa                                                      >  1:147037/1‑149 (MQ=255)                                                                                               aaCCCGGTGGCCGGGCCAATGTATTTGGTGGCGTGGGCCTGAAACGAACCGGACACCGGCATCTGCACCGACAGCTCGCCCAGGCAGACCATCACCAGGTACATCAGCAAGCCTGCGACCAGGTAAGCCAGGATCGCGCCCACCGgccc                                               <  6:255881/149‑1 (MQ=255)                                                                                                 cccGGTGGCCGGGCCAATGTATTTGGTGGCGTGGGCCTGAAACGAACCGGACACCGGCATCTGCACCGACAGCTCGCCCAGGCAGACCATCACCAGGTACATCAGCAAGCCTGCGACCAGGTAAGCCAGGATCGCGCCCACCGgcccgc                                             >  1:139319/1‑149 (MQ=255)                                                                                                   cGGTGGCCGGGCCAATGTATTTGGTGGCGTGGGCCTGAAACGAACCGGAcaccgggttcatgatcggctgggtgtactggatgagctgggccaccaccgtaggcctggagttcaccgctgccggcatgttgatgacccgctggttcccg                                           <  1:5369‑M2/149‑101 (MQ=255)                                                                                                    ggTGGCCGGGCCAATGTATTTGGTGGCGTGGGCCTGAAACGAACCGGAcaccgggttcatgatcggctgggtgtactggatgagctgggccaccaccgtaggcctggagttcaccgctgccggcatgttgatgacccgctggttcccg                                           <  1:82287‑M2/148‑101 (MQ=255)                                                                                                        gCCGGGCCAATGTATTTGGTGGCGTGGGCCTGAAACGAACCGGACACCGGCATCTGCACCGACAGCTCGCCCAGGCAGACCATCACCAGGTACATCAGCAAGCCTGCGACCAGGTAAGCCAGGATCGCGCCCACCGGCCCGCCCtgat                                       <  7:2863/148‑1 (MQ=255)                                                                                                          cGGGCCAATGTATTTGGTGGCGTGGGCCTGAAACGAACCGGACACCGGCATCTGCACCGACAGCTCGCCCAGGCAGACCATCACCAGGTACATCAGCAAGCCTGCGACCAGGTAAGCCAGGATCGCGCCCACCGGCCCGCCCtgattga                                    <  2:147037/149‑1 (MQ=255)                                                                                                          cGGGCCAATGTATTTGGTGGCGTGGGCCTGAAACGAACCGGACACCGGCATCTGCACCGACAGCTCGCCCAGGCAGACCATCACCAGGTACATCAGCAAGCCTGCGACCAGGTAAGCCAGGATCGCGCCCACCGGCCCGCCCtgattga                                    <  3:58809/149‑1 (MQ=255)                                                                                                          cGGGCCAATGTATTTGGTGGCGTGGGCCTGAAACGAACCGGACACCGGCATCTGCACCGACAGCTCGCCCAGGCAGACCATCACCAGGTACATCAGCAAGCCTGCGACCAGGTAAGCCAGGATCGCGCCCACCGGCCCGCCCtgattga                                    <  2:210252/149‑1 (MQ=255)                                                                                                             gCCAATGTATTTGGTGGCGTGGGCCTGAAACGAACCGGAcaccgggttcatgatcggctgggtgtactggatgagctgggccaccaccgtaggcctggagttcaccgctgccggcatgttgatgacccgctggttcccggaggtgccga                                 >  2:5369‑M2/1‑39 (MQ=255)                                                                                                                        tggtggCGTGGGCCTGAAACGAACCGGACACCGGCATCTGCACCGACAGCTCGCCCAGGCAGACCATCACCAGGTACATCAGCAAGCCTGCGACCAGGTAAGCCAGGATCGCGCCCACCGGCCCGCCCTGATTGATGGTTACGCCCGa                       <  8:37833/148‑1 (MQ=255)                                                                                                                               gTGGGCCTGAAACGAACCGGACACCGGCATCTGCACCGACAGCTCGCCCAGGCAGACCATCACCAGGTACATCAGCAAGCCTGCGACCAGGTAAGCCAGGATCGCGCCCACCGGCCCGCCCTGATTGATGGTTACGCCCGAGCCCATGa               <  2:227011/149‑1 (MQ=255)                                                                                                                               gTGGGCCTGAAACGAACCGGACACCGGCATCTGCACCGACAGCTCGCCCAGGCAGACCATCACCAGGTACATCAGCAAGCCTGCGACCAGGTAAGCCAGGATCGCGCCCACCGGCCCGCCCTGATTGATGGTTACGCCCGAGCCCATGa               <  2:139319/149‑1 (MQ=255)                                                                                                                                     cTGAAACGAACCGGACACCGGCATCTGCACCGACAGCTCGCCCAGGCAGACCATCACCAGGTACATCAGCAAGCCTGCGACCAGGTAAGCCAGGATCGCGCCCACCGGCCCGCCCTGATTGATGGTTACGCCCGAGCCCATGAACAGGc         >  8:196055/1‑149 (MQ=255)                                                                                                                                     cTGAAACGAACCGGACACCGGCATCTGCACCGACAGCTCGCCCAGGCAGACCATCACCAGGTACATCAGCAAGCCTGCGACCAGGTAAGCCAGGATCGCGCCCACCGGCCCGCCCTGATTGATGGTTACGCCCGAGCCCATGAACAGGc         >  8:203287/1‑149 (MQ=255)                                                                                                                                     cTGAAACGAACCCGACACCGGCATCTGCACCGACAGCTCGCCCAGGCAGACCATCACCAGGTACATCAGCAAGCCTGCGACCAGGTAAGCCAGGATCGCGCCCACCGGCCCGCCCTGATTGATGGTTACGCCCGAGCCCATGAACAGGc         <  6:57208/149‑1 (MQ=255)                                                                                                                                      tGAAACGAACCGGACACCGGCATCTGCACCGACAGCTCGCCCAGGCAGACCATCACCAGGTACATCAGCAAGCCTGCGACCAGGTAAGCCAGGATCGCGCCCACCGGCCCGCCCTGATTGATGGTTACGCCCGAGCCCATGAACAGGcc        >  5:132087/1‑149 (MQ=255)                                                                                                                                       gAAACGAACCGGACACCGGCATCTGCACCGACAGCTCGCCCAGGCAGACCATCACCAGGTACATCAGCAAGCCTGCGACCAGGTAAGCCAGGATCGCGCCCACCGGCCCGCCCTGATTGATGGTTACGCCCGAGCCCATGAACAGGCCg       >  4:57999/1‑149 (MQ=255)                                                                                                                                            gAACCGGACACCGGCATCTGCACCGACAGCTCGCCCAGGCAGACCATCACCAGGTACATCAGCAAGCCTGCGACCAGTTAAGCCAGGATCGCGCCCACCGGCCCGCCCTGATTGATGGTTACGCCCGAGCCCATGAACAGGCCGGTTcc  <  2:210998/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                              CTCCGGGAACCAGCGGGTCATCAACATGCCGGCAGCGGTGAACTCCAGGCCTACGGTGGTGGCCCAGCTCATCCAGTACACCCAGCCGATCATGAACCCGGTGGCCGGGCCAATGTATTTGGTGGCGTGGGCCTGAAACGAACCGGACACCGGCATCTGCACCGACAGCTCGCCCAGGCAGACCATCACCAGGTACATCAGCAAGCCTGCGACCAGGTAAGCCAGGATCGCGCCCACCGGCCCGCCCTGATTGATGGTTACGCCCGAGCCCATGAACAGGCCGGTTCC  >  NC_002947/4253307‑4253594

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.