New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4395216	45 (1.070)	5 (0.130)	5/244	NT	10.5%	coding (558/594 nt)	PP_3871	hypothetical protein
	?	NC_002947	= 4395236	43 (1.080)					coding (538/594 nt)	PP_3871	hypothetical protein

TTCGCGCCCTTCCGGCGGCAGCACGCCGCCCAGTTCCGGATCGGGCACGACGCGGCCCTCCACCGGATACACGGTGATTCGAGTCATGGGGATTACCCTTGTGGTAGTTCGGTGGAAAAGCGCACTTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4395088‑4395216 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacttcgCCTGGGCCTGATGGCCGGGTCGAAGTGCGCTTTTCCACCGAACTACCACAAGGGTAATCCCCATGACTCGAATCACCGTGTATCCGGTGGAGGGCCGCGTCGTGCCCGATCCGGAACTGGGCGGCGTGCTGCCGCCGGAAGGG  <  NC_002947/4395236‑4395094                                                                                                                                                                                                                                                                                  TTCGCGCCCTTCCGGCGGCAGCACGCCGCCCAGTTCCGGATCGGGCACGACGCGGCCCTCCACCGGATACACGGTGATTCGAGTCATGGGGATTACCCTTGTGGTAGTTCGGTGGAAAAGCGCACTTCGCCTGGGCCTGATGGCCGGGT                                                                                                                             >  3:199129/1‑149     CGCCCTTCCGGCGGCAGCACGCCGCCCAGTTCCGGATCGGGCACGACGCGGCCCTCCACCGGATACACGGTGATTCGAGTCATGGGGATTACCCTTGTGGTAGTTCGGTGGAAAAGCGCACTTCGCCTGGGCCTGATGGCCGGGTCGAA                                                                                                                         <  4:199129/149‑1            CCGGCGGCAGCACGCCGCCCAGTTCCGGATCGGGCACGACGCGGCCCTCCACCGGATACACGGTGATTCGAGTCATGGGGATTACCCTTGTGGTAGTTCGGTGGAAAAGCGCACTTCGCCTGGGCCTGATGGCCGGGTCGAAGTGCGC                                                                                                                   <  7:247769/148‑1                                                 GACGCGGCCCTCCACCGGATACACGGTGATTCGAGTCATGGGGATTACCCTTGTGGTAGTTCGGTGGAAAAGCGCACTTCGCCTGGGCCTGATGGCCGGGTCGAAGTG                                                                                                                      <  3:63064/108‑1                                                 GACGCGGCCCTCCACCGGATACACGGTGATTCGAGTCATGGGGATTACCCTTGTGGTAGTTCGGTGGAAAAGCGCACTTCGCCTGGGCCTGATGGCCGGGTCGAAGTG                                                                                                                      >  4:63064/1‑108                                                                                                                            ACTTCGCCTGGGCCTGATGGCCGGGTCGAAGTGCGCTTTTCCACCGAACTACCACAAGGGTAATCCCCATGACTCGAATCACCGTGTATCCGGTGGAGGGCCGCGTCGTGCCCGATCCGGAACTGGGCGGCGTGCTGCCGGCGGAAGGG  >  2:80222/1‑149                                                                                                                               TCGCCTGGGCCTGATGGCCGGGTCGAAGTGCGCTTTTCCACCGAACTACCACAAGGGTAATCCCCATGACTCGAATCACCGTGTATCCGGTGGAGGGCCGCGTCGTGCCCGATCCGGAACTGGGCGGCGTGCTGCCGCCGGAA     >  2:66265/1‑143                                                                                                                               TCGCCTGGGCCTGATGGCCGGGTCGAAGTGCGCTGTTCCACCGAACTACCACAAGGGTAATCCCCATGACTCGAATCACCGTGTATCCGGTGGAGGGCCGCGTCGTGCCCGATCCGGAACTGGGCGGCGTGCTGCCGCCGGAA     <  1:66265/143‑1                                                                                                                                                                                                                                                                                  TTCGCGCCCTTCCGGCGGCAGCACGCCGCCCAGTTCCGGATCGGGCACGACGCGGCCCTCCACCGGATACACGGTGATTCGAGTCATGGGGATTACCCTTGTGGTAGTTCGGTGGAAAAGCGCACTTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4395088‑4395216 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacttcgCCTGGGCCTGATGGCCGGGTCGAAGTGCGCTTTTCCACCGAACTACCACAAGGGTAATCCCCATGACTCGAATCACCGTGTATCCGGTGGAGGGCCGCGTCGTGCCCGATCCGGAACTGGGCGGCGTGCTGCCGCCGGAAGGG  <  NC_002947/4395236‑4395094

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.