New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4395216	45 (1.070)	5 (0.130)	5/244	NT	10.5%	coding (558/594 nt)	PP_3871	hypothetical protein
	?	NC_002947	= 4395236	43 (1.080)					coding (538/594 nt)	PP_3871	hypothetical protein

GCATCGCGCGGCACTTCGCGCCCTTCCGGCGGCAGCACGCCGCCCAGTTCCGGATCGGGCACGACGCGGCCCTCCACCGGATACACGGTGATTCGAGTCATGGGGATTACCCTTGTGGTAGTTCGGTGGAAAAGCGCACTTCGACCCGGCCATCAGGCCCAGGCGAAGTGTGGTTGGGGTCTTTCGGATCCAGGCTGTCCAGGCTGAAGTCGATGCCCTTCAGCGGCGGCAGGCCATCAAGCTCGTATTCATGCCAGGTTTCGGCGGGCTCACTGCCGCGGTTGCGGC  >  NC_002947/4395074‑4395361                                                                                                                                               |                                                                                                                                                  gCATCGCGCGGCACTTCGCGCCCTTCCGGCGGCAGCACGCCGCCCAGTTCCGGATCGGGCACGACGCGGCCCTCCACCGGATACACGGTGATTCGAGTCATGGGGATTACCCTTGTGGTAGTTCGGTGGAAAAGCGCACTTCGACCCgg                                                                                                                                             >  1:80222/1‑149 (MQ=255)   aTCGCGCGGCACTTCGCGCCCTTCCGGCGGCAGCACGCCGCCCAGTTCCGGATCGGGCACGACGCGGCCCTCCACCGGATACACGGTGATTCGAGTCATGGGGATTACCCTTGTGGTAGTTCGGTGTAAAAGCGCACTTCGACCCGGc                                                                                                                                            >  8:173120/1‑148 (MQ=255)           gCACTTCGCGCCCTTCCGGCGGCAGCACGCCGCCCAGTTCCGGATCGGGCACGACGCGGCCCTCCACCGGATACACGGTGATTCGAGTCATGGGGATTACCCTTGTGGTAGTTCGGTGGAAAAGCGCACTTCGACCCGGCCATCAGGcc                                                                                                                                   >  6:54499/1‑149 (MQ=255)               ttCGCGCCCTTCCGGCGGCAGCACGCCGCCCAGTTCCGGATCGGGCACGACGCGGCCCTCCACCGGATACACGGTGATTCGAGTCATGGGGATTACCCTTGTGGTAGTTCGGTGGAAAAGCGCACTTCGcctgggcctgatggccgggt                                                                                                                               >  3:199129‑M1/1‑129 (MQ=255)                   cgcCCTTCCGGCGGCAGCACGCCGCCCAGTTCCGGATCGGGCACGACGCGGCCCTCCACCGGATACACGGTGATTCGAGTCATGGGGATTACCCTTGTGGTAGTTCGGTGGAAAAGCGCACTTCGcctgggcctgatggccgggtcgaa                                                                                                                           <  4:199129‑M1/149‑25 (MQ=255)                     cccTTCCGCCGGCAGCACGCCGCCCAGTTCCGGATCGGGCACGACGCGGCCCTCCACCGGATACACGGTGATTCGAGTCATGGGGATTACCCTTGTGGTAGTTCGGTGGAAAAGCGCACTTCGACCCGGCCATCAGGCCCAGGcgaagt                                                                                                                         >  2:80222‑M2/1‑143 (MQ=255)                        ttCCGGCGGCAGCACGCCGCCCAGTTCCGGATCGGGCACGACGCGGCCCTCCACCGGATACACGGTGATTCGAGTCATGGGGATTACCCTTGTGGTAGTTCGGTGGAACAGCGCACTTCGACCCGGCCATCAGGCCCAGGcga                                                                                                                            <  1:66265‑M2/143‑4 (MQ=255)                        ttCCGGCGGCAGCACGCCGCCCAGTTCCGGATCGGGCACGACGCGGCCCTCCACCGGATACACGGTGATTCGAGTCATGGGGATTACCCTTGTGGTAGTTCGGTGGAAAAGCGCACTTCGACCCGGCCATCAGGCCCAGGcga                                                                                                                            >  2:66265‑M2/1‑140 (MQ=255)                          ccGGCGGCAGCACGCCGCCCAGTTCCGGATCGGGCACGACGCGGCCCTCCACCGGATACACGGTGATTCGAGTCATGGGGATTACCCTTGTGGTAGTTCGGTGGAAAAGCGCACTTCGcctgggcctgatggccgggtcgaagtgcgc                                                                                                                     <  7:247769‑M1/148‑31 (MQ=255)                          ccGGCGGCAGCACGCCGCCCAGTTCCGGATCGGGCACGACGCGGCCCTCCACCGGATACACGGTGATTCGAGTCATGGGGATTACCCTTGTGGTAGTTCGGTGGAAAAGCGCACTTCGACCCGGCCATCAGGCCCAGGCGAAGTGTGGt                                                                                                                    >  4:74532/1‑149 (MQ=255)                            ggcggcAGCACGCCGCCCAGTTCCGGATCGGGCACGACGCGGCCCTCCACCGGATACACGGTGATTCGAGTCATGGGGATTACCCTTGTGGTAGTTCGGTGGAAAAGCGCACTTCGACCCGGCCATCAGGCCCAGGCGAAGTGTGGTTg                                                                                                                  <  5:228399/149‑1 (MQ=255)                            ggccgcAGCACGCCCCCCAGTTCCGGATCGGGCACGACGCGGCCCTCCACCGGATACACGGTGATTCGAGTCATGGGGATTACCCTTGTGGTAGTTCGGTCGAAAAGCGCACTTCCACCCCGCCATCAGACCCAGGCGAAGTGTGGttc                                                                                                                  >  4:57923/1‑148 (MQ=255)                              cggcAGCACGCCGCCCAGTTCCGGATCGGGCACGACGCGGCCCTCCACCGGATACACGGTGATTCGAGTCATGGGGATTACCCTTGTGGTAGTTCGGTGGAAAAGCGCACTTCGACCCGGCCATCAGGCCCAGGCGAAGTGTGGTTggg                                                                                                                <  1:230177/149‑1 (MQ=255)                               ggcAGCACGCCGCCCAGTTCCGGATCGGGCACGACGCGGCCCTCCACCGGATACACGGTGATTCGAGTCATGGGGATTACCCTTGTGGTAGTTCGGTGGAAAAGCGCACTTCGACCCGGCCATCTTTCCCAGGCGAAGTGTGGTTgggg                                                                                                               <  7:168112/149‑1 (MQ=255)                                    caCGCCGCCCAGTTCCGGATCGGGCACGACGCGGCCCTCCACCGGATACACGGTGATTCGAGTCATGGGGATTACCCTTGTGGTAGTTCGGTGGAAAAGCGCACTTCGACCCGGCCATCAGGCCCAGGCGAAGTGTGGTTGGGGTCt                                                                                                            >  6:5721/1‑147 (MQ=255)                                    caCGCCGCCCAGTTCCGGATCGGGCACGACGCGGCCCTCCACCGGATACACGGTGATTCGAGTCATGGGGATTACCCTTGTGGTAGTTCGGTGGAAAAGCGCACTTCGACCCGGCCATCAGGCCCAGGCGAAGTGTGGTTGGGGTCt                                                                                                            <  5:5721/147‑1 (MQ=255)                                        ccgccCAGTTCCGGATCGGGCACGACGCGGCCCTCCACCGGATACACGGTGATTCGAGTCATGGGGATTACCCTTGTGGTAGTTCGGTGGAAAAGCGCACTTCGACCCGGCCATCAGGCCCAGGCGAAGTGTGGTTGGGGTCTTTCGGa                                                                                                      >  7:54123/1‑149 (MQ=255)                                           cccAGTTACGGATCGGGCACGACGCGTCCCTCCACCGGATACACTGTTATTCGAGTCATGGGGATTACCCTTGTGGTAGTTCTGTGGAAAAGCGCACTTCGACCCgg                                                                                                                                             <  6:38164/107‑1 (MQ=255)                                           cacAGTTCCGGATCGGGCACGACGCGTACATCCACCGGATAGACGGTGATTCGAGTCATGTGGATTACCCTTGAGGTAGTTCGGTGCAAAAGCGCACTACGAACCgg                                                                                                                                             >  5:38164/3‑107 (MQ=255)                                            ccAGTTCCGGATCGGGCACGACGCGGCCCTCCACCGGATACACGGTGATTCGAGTCATGGGGATTACCTTTGTGGTAGTTCGGTGTAAAAGCGCACTTCGACCCGGCCATCAGGCCCAGGCGAAGTGTGGTTGGGGTCTTTCGGAtcca                                                                                                  <  7:173120/149‑1 (MQ=255)                                             cAGTTCCGGATCGGGCACGACGCGGCCCTCCACCGGATACACGGTGATTCGAGTCATGGGGATTACCCTTGTGGTAGTTCGGTGGAAAAGCGCACTTCGACCCGGCCATCAGGCCCAGGCGAAGTGTGGTTGGGGTCTTTCGGAtccag                                                                                                 <  3:74532/149‑1 (MQ=255)                                                    ggATCGGGCACGACGCGGCCCTCCACCGGATACACGGTGATTCGAGTCATGGGGATTACCCTTGTGGTAGTTCGGTGGAAAAGCGCACTTCGACCCGGCCATCAGGCCCAGGCGAAGTGTGGTTGGGGTCTTTCGGAtccaggctgtc                                                                                           >  2:245378/1‑148 (MQ=255)                                                               gacgCGGCCCTCCACCGGATACACGGTGATTCGAGTCATGGGGATTACCCTTGTGGTAGTTCGGTGGAAAAGCGCACTTCGcctgggcctgatggccgggtcgaagtg                                                                                                                        <  3:63064‑M1/108‑28 (MQ=255)                                                               gacgCGGCCCTCCACCGGATACACGGTGATTCGAGTCATGGGGATTACCCTTGTGGTAGTTCGGTGGAAAAGCGCACTTCGcctgggcctgatggccgggtcgaagtg                                                                                                                        >  4:63064‑M1/1‑81 (MQ=255)                                                                  gcgGCCCTCCACCGGATACACGGTGATTCGAGTCATGGGGATTACCCTTGTGGTAGTTCGGTTGAAAAGCGCACTTCGACCCGGCCATCAGGCCCAGGCGAAGTGTGGTTGGGGTCTTTCGGATCCAGGCTGTCCAGGCTGAAGTCGAt                                                                            <  3:57923/149‑1 (MQ=255)                                                                   cgGCGCTGCACCGGATACACGGTGATTCGAGTCATGGGGATTACCCTTGTGGTAGTTGGGTGGAAAAGCGCACTTCGACCCGGCCATCAGGCCCAGGCGAAGTGTGGTTGGGGTCTTTCGGATCCAGGCTGTCCAGGCTGAAGTCGATg                                                                           <  1:245378/149‑1 (MQ=255)                                                                    ggCCCTCCACCGGATACACGGTGATTCGAGTCATGGGGATTACCCTTGTGGTAGTTCGGTGGAAAAGCGCACTTCGACCCGGCCATCAGGCCCAGGCGAAGTGTGGTTGGGGTCTTTCGGATCCAGGCTGTCCAGGCTGAAGTCGATGc                                                                          >  2:84171/1‑149 (MQ=255)                                                                       ccTCCACCGGATACACGGTGATTCGAGTCATGGGGATTACCCTTGTGGTAGTTCGGTGGAAAAGCGCACTTCGACCCGGCCATCAGGCCCAGGCGAAGTGTGGTTGGGGTCTTTCGGATCCAGGCTGTCCAGGCTGAAGTCGa                                                                             >  7:165561/1‑143 (MQ=255)                                                                       ccTCCACCGGATACACGGTGATTCGAGTCATGGGGATTACCCTTGTGGTAGTTCGGTGGAAAAGCGCACTTCGACCCGGCCATCAGGCCCAGGCGAAGTGTGGTTGGGGTCTTTCGGATCCAGGCTGTCCAGGCTGAAGTCGa                                                                             <  8:165561/143‑1 (MQ=255)                                                                        cTCCACCGGATACACGGTGATTCGAGTCATGGGGATTACCCTTGTGGTAGTTCGGTGGAAAAGCGCACTTCGACCCGGCCATCAGGCCCAGGCGAAGTGTGGTTGGGGTCTTTCGGATCCAGGCTGTCCAGGCTGAAGTCGATGCCCt                                                                       >  2:237800/1‑148 (MQ=255)                                                                         tCCACCGGATACACGGTGATTCGAGTCATGGGGATTACCCTTGTGGTAGTTCGGTGGAAAAGCGCACTTCGACCCGGCCATCAGGCCCAGGCGAAGTGTGGTTGGGGt                                                                                                              <  6:95693/108‑1 (MQ=255)                                                                         tCCACCGGATACACGGTGATTCGAGTCATGGGGATTACCCTTGTGGTAGTTCGGTGGAAAAGCGCACTTCGACCCGGCCATCAGGCCCAGGCGAAGTGTGGTTGGGGt                                                                                                              >  5:95693/1‑108 (MQ=255)                                                                             ccGGATACACGGTGATTCGAGTCATGGGGATTACCCTTGTGGTAGTTCGGTGGAAAAGCGCACTTCGACCCGGCCATCAGGCCCAgg                                                                                                                               >  5:233751/1‑87 (MQ=255)                                                                             ccGGATACACGGTGATTCGAGTCATGGGGATTACCCTTGTGGTAGTTCGGTGGAAAAGCGCACTTCGACCCGGCCATCAGGCCCAgg                                                                                                                               <  6:233751/87‑1 (MQ=255)                                                                                     acGGTGATTCGAGTCATGGGGATTACCCTTGTGGTAGTTCGGTGGAAAAGCGCACTTCGACCCGGCCATCAGGCCCAGGCGAAGTGTGGTTGGGGTCTTTCGGATCCAGGCTGTCCAGGCTGAAGTCGATGCCCTTCa                                                                    <  7:25700/138‑1 (MQ=255)                                                                                     acGGTGATTCGAGTCATGGGGATTACCCTTGTGGTAGTTCGGTGGAAAAGCGCACTTCGACCCGGCCATCAGGCCCAGGCGAAGTGTGGTTGGGGTCTTTCGGATCCAGGCTGTCCAGGCTGAAGTCGATGCCCTTCa                                                                    >  8:25700/1‑138 (MQ=255)                                                                                      cGGTGATTCGAGTCATGGGGATTACCCTTGTGGTAGTTCGGTGGAAAAGCGCACTTCGACCCGGCCATCAGGCCCAGGCGAAGTGTGGTTGGGGTCTTTCGGATCCAGGCTGTCCAGGCTGAAGTCGATGCCCTTCAGCGGCGGCAGGc                                                        <  6:100959/149‑1 (MQ=255)                                                                                               gAGTCATGGGGATTACCCTTGTGGTAGTTCGGTGGAAAAGCGCACTTCGACCCGGCCATCAGGCCCAGGCGAAGTGTGGTTGGGGTCTTTCGGATCCAGGCTGTCCAGGCTGAAGTCGATGCCCTTCAGCGGCGGCAGGc                                                        <  2:258905/140‑1 (MQ=255)                                                                                               gAGTCATGGGGATTACCCTTGTGGTAGTTCGGTGGAAAAGCGCACTTCGACCCGGCCATCAGGCCCAGGCGAAGTGTGGTTGGGGTCTTTCGGATCCAGGCTGTCCAGGCTGAAGTCGATGCCCTTCAGCGGCGGCAGGc                                                        >  1:258905/1‑140 (MQ=255)                                                                                               gAGTCATGGGGATTACCCTTGTGGTAGTTCGGTGGAAAAGCGCACTTCGACCCGGCCATCAGGCCCAGGCGAAGTGTGGTTGGGGTCTTTCGGATCCAGGCTGTCCAGGCTGAAGTCGATGCCCTTCAGCGGCGGCAGGCCATCAAGCt                                               >  3:168152/1‑149 (MQ=255)                                                                                                       gggATTACCCTTGTGGTAGTTCGGTGGAAAAGCGCACTTCGACCCGGCCATCAGGCCCAGGCGAAGTGTGGTTGGGGTCTTTCGGATCCAGGCTGTCCAGGCTGAAGTCGATGCCCTTCAGCGGCGGCAGGCCATCAAGc                                                >  7:253244/1‑140 (MQ=255)                                                                                                       gggATTACCCTTGTGGTAGTTCGGTGGAAAAGCGCACTTCGACCCGGCCATCAGGCCCAGGCGAAGTGTGGTTGGGGTCTTTCGGATCCAGGCTGTCCAGGCTGAAGTCGATGCCCTTCAGCGGCGGCAGGCCATCAAGc                                                <  8:253244/140‑1 (MQ=255)                                                                                                        ggATTACCCTTGTGGTAGTTCGGTGGAAAAGCGCACTTCGACCCGGCCATCAGGCCCAGGCGAAGTTTGGTTGGGGTCTTTCGGATCCAGGCTGTCCAGGCTGAAGTCGATGCCCTTCAGCGGCGGCAGGCCATCAAGCTCGTATTCAt                                      >  4:75227/1‑149 (MQ=255)                                                                                                        ggATTACCCTTGTGGTAGTTCGGTGGAAAAGCGCACTTCGACCCGGCCATCAGGCCCAGGCGAAGTGTGGTTGGGGTCTTTCGGATCCAGGCTGTCCAGGCTGAAGTCGATGCCCTTCAGCGGCGGCAGGCCATCAAGCTCGTATTCAt                                      >  4:30062/1‑149 (MQ=255)                                                                                                        ggATTACCCTTGTGGTAGTTCGGTGGAAAAGCGCACTTCGACCCGGCCATCAGGCCCAGGCGAAGTGTGGTTGGGGTCTTTCGGATCCAGGCTGTCCAGGCTGAAGTCGATGCCCTTCAGCGGCGGCAGGCCATCAAGCTCGTATTCAt                                      <  3:36889/149‑1 (MQ=255)                                                                                                         gATTACCCTTGTGGTAGTTCGGTGGAAAAGCGCACTTCGACCCGGCCATCAGGCCCAGGCGAAGTGTGGTTGGGGTCTTTCGGATCCAGGCTGTCCAGGCTGAAGTCGATGCCCTTCAGCGGCGGCAGGCCATCAAGCTCGTATTCATg                                     >  6:114708/1‑149 (MQ=255)                                                                                                                cTTGTGGTAGTTCGGTGGAAAAGCGCACTTCGACCCGGCCATCAGGCCCAGGCGAAGTGTGGTTGGGGTCTTTCGGATCCAGGCTGTCCAGGCTGAAGTCGATGCCCTTCAGCGGCGGCAGGCCATCAAGCTCGTATTCATGCCAGGtt                              >  8:192384/1‑149 (MQ=255)                                                                                                                          ttCGGTGGAAAAGCGCACTTCGACCCGGCCATCAGGCCCAGGCGAAGTGTGGTTGGGGTCTTTCGGATCCAGGCTGTCCAGGCTGAAGTCGATGCCCTTCAGCGGCGGCAGGCCATCAAGCTCGTATTCATGCCAGGTTTCGGCGGGCt                    >  3:67674/1‑149 (MQ=255)                                                                                                                                ggAAAAGCGCACTTCGACCCGGCCATCAGGCCCAGGCGAAGTGTGGTTGGGGTCTTTCGGATCCAGGCTGTCCAGGCTGAAGTCGATGCCCTTCAGCGGCGGCAGGCCATCAAGCTCGTATTCATGCCAGGTTTCggctggctttcagt              >  8:251843/1‑143 (MQ=255)                                                                                                                                 gAAAAGCGCACTTCGACCCGGCCATCAGGCCCAGGCGAAGTGTGGTTGGGGTCTTTCGGATCCAGGCTGTCCAGGCTGAAGTCGATGCCCTTCAGCGGCGGCAGGCCATCAAGCTCGTATTCATGCCAGGTTTCGGCGGGCTCACTGc              <  8:54123/148‑1 (MQ=255)                                                                                                                                  aaaaGCGCACTTCGACCCGGCCATCAGGCCCAGGCGAAGTGTGGTTGGGGTCTTTCGGATCCAGGCTGTCCAGGCTGAAGTCGATGCCTTTCAGCGGCGGCAGGCCATCAAGCTCGTATTCATGCCAGGTTTCGGCGGGCTCACTGCcg            >  2:100439/1‑149 (MQ=255)                                                                                                                                      gcgcACTTCGACCCGGCCATCAGGCCCAGGcgaagtgcgcttttccaccgaactaccacaagggtaatccccatgactcgaatcaccgtgtatccggtggagggccgcgtcgtgcccgatccggaactgggcggcgtgctgccgccgg         <  7:247769‑M2/148‑119 (MQ=255)                                                                                                                                         cACTTCGACCCGGCCATCAGGCCCAGGcgaagtgcgcttttccaccgaactaccacaagggtaatccccatgactcgaatcaccgtgtatccggtggagggccgcgtc                                              <  3:63064‑M2/108‑82 (MQ=255)                                                                                                                                         cACTTCGACCCGGCCATCAGGCCCAGGcgaagtgcgcttttccaccgaactaccacaagggtaatccccatgactcgaatcaccgtgtatccggtggagggccgcgtc                                              >  4:63064‑M2/1‑27 (MQ=255)                                                                                                                                          aCTTCGcctgggcctgatggccgggtcgaagtgcgcttttccaccgaactaccacaagggtaatccccatgactcgaatcaccgtgtatccggtggagggccgcgtcgtgcccgatccggaactgggcggcgtgctgccggcggaaggg    >  2:80222‑M1/1‑6 (MQ=255)                                                                                                                                          aCTTCGACCCGGCCATCAGGCCCAGGCGAAGTGTGGTTGGGGTCTTTCGGATCCAGGCTGTCCAGGCTGAAGTCGATGCCCTTCAGCGGCGGCAGGCCATCAAGCTCGTATTCATGCCAGGTTTCGGCGGGCTCACTGCCGCGGTTGCg    >  5:234493/1‑149 (MQ=255)                                                                                                                                          aCTTCGACCCGGCCATCAGGCCCAGGCGAAGTGTGGTTGGGGTCTTTCGGATCCAGGCTGTCCAGGCTGAAGTCGATGCCCTTCAGCGGCGGCAGGCCATCAAGCTCGTATTCATGCCAGGTTTCGGCGGGCTCACTGCCGCGGTTGCg    >  3:90834/1‑149 (MQ=255)                                                                                                                                            ttCGACCCGGCCATCAGGCCCAGGcgaagtgcgcttttccaccgaactaccacaagggtaatccccatgactcgaatcaccgtgtatccggtggagggccgcgtcgtgcccgatccggaactgggcggcgtgctgccgccggaagggcg  <  4:199129‑M2/149‑126 (MQ=255)                                                                                                                                             tCGcctgggcctgatggccgggtcgaagtgcgcttttccaccgaactaccacaagggtaatccccatgactcgaatcaccgtgtatccggtggagggccgcgtcgtgcccgatccggaactgggcggcgtgctgccgccggaa       >  2:66265‑M1/1‑3 (MQ=255)                                                                                                                                             tCGcctgggcctgatggccgggtcgaagtgcgctgttccaccgaactaccacaagggtaatccccatgactcgaatcaccgtgtatccggtggagggccgcgtcgtgcccgatccggaactgggcggcgtgctgccgccggaa       <  1:66265‑M1/143‑141 (MQ=255)                                                                                                                                               |                                                                                                                                                  GCATCGCGCGGCACTTCGCGCCCTTCCGGCGGCAGCACGCCGCCCAGTTCCGGATCGGGCACGACGCGGCCCTCCACCGGATACACGGTGATTCGAGTCATGGGGATTACCCTTGTGGTAGTTCGGTGGAAAAGCGCACTTCGACCCGGCCATCAGGCCCAGGCGAAGTGTGGTTGGGGTCTTTCGGATCCAGGCTGTCCAGGCTGAAGTCGATGCCCTTCAGCGGCGGCAGGCCATCAAGCTCGTATTCATGCCAGGTTTCGGCGGGCTCACTGCCGCGGTTGCGGC  >  NC_002947/4395074‑4395361

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.