| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4449587 | 43 (1.020) | 3 (0.070) | 3/250 | NT | 6.8% | intergenic (+102/‑340) | nicR/nicA | HTH‑type transcriptional repressor NicR/nicotinate dehydrogenase subunit A |
| ? | NC_002947 | = 4449639 | 40 (0.980) | intergenic (+154/‑288) | nicR/nicA | HTH‑type transcriptional repressor NicR/nicotinate dehydrogenase subunit A | |||||
CGCAAGATGATCGACAGCGACGAGAACGCGGGCTGAAGATTGTTGTGACTGCCGCCATTGCCGTCACAGATACGCGGCCTGAGAGATCAAGCGCATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4449450‑4449587‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggCCAGCAGGGCCGGCCCATTCGCGGGTGAACCCGCTCCTACGGCGGCCTGTGTCCAACCACCGATGCGTGTCCAATGTGAGCGAGCTTGCTCGCGATGCGCTTGATCTCTCAGGCCGCGTATCTGTGACGGCAATGGCGGCAGTCACAA < NC_002947/4449639‑4449492 CGCAAGATGATCGACAGCGACGAGAACGCGGGCTGAAGATTGTTGTGACTGCCGCCATTGCCGTCACAGATACGCGGCCTGAGAGATCAAGCGCATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGT < 1:242962/135‑1CGCAAGATGATCGACAGCGACGAGAACGCGGGCTGAAGATTGTTGTGACTGCCGCCATTGCCGTCACAGATACGCGGCCTGAGAGATCAAGCGCATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGT > 2:242962/1‑135 TGAAGATTGTTGTGACTGCCGCCATTGCCGTCACAGATACGCGGCCTGAGAGATCAAGCGCATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGCCAGCAGGGCCGGCCCATTCGCGGGTGAACCCGCTCCTACGGCG > 3:178605/1‑149 AAGATTGTTGTTACTGCCGCCATTGGCGTGACAGATACGCGGCCTGAGAGATCAAGCGCATCGCGAGCAAGCTCGCTCACATTGGACACGCTTCGGTGGTTGGCCAGCAGGGCCGGCGCATTCGCGGGTGAACCCGCTCCTACGGCGG < 4:178605/148‑1 ACAGATACGCGGCCTGAGAGATCAAGCGCATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGCCAGCAGGGCCGGCCCATTCGCGGGTGAACCCGCTCCTACGGCGGCCTGTGTCCAACCACCGAT < 2:101341/137‑1 GCCAGCAGGGCCGGCCCATTCGCGGGTGAACCCGCTCCTACGGCGGCCTGTCTCCAACCACCGATGCGTGTCCAATGTGAGCGAGCTTGCTCGCGATGCGCTTGATCTCTCAGGCCGCGTATCTGTGACGGCAATGGCGGCAGTCACAA < 3:69463/149‑1 CGCAAGATGATCGACAGCGACGAGAACGCGGGCTGAAGATTGTTGTGACTGCCGCCATTGCCGTCACAGATACGCGGCCTGAGAGATCAAGCGCATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4449450‑4449587‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggCCAGCAGGGCCGGCCCATTCGCGGGTGAACCCGCTCCTACGGCGGCCTGTGTCCAACCACCGATGCGTGTCCAATGTGAGCGAGCTTGCTCGCGATGCGCTTGATCTCTCAGGCCGCGTATCTGTGACGGCAATGGCGGCAGTCACAA < NC_002947/4449639‑4449492 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |