New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4449587	43 (1.020)	3 (0.070)	3/250	NT	6.8%	intergenic (+102/‑340)	nicR/nicA	HTH‑type transcriptional repressor NicR/nicotinate dehydrogenase subunit A
	?	NC_002947	= 4449639	40 (0.980)					intergenic (+154/‑288)	nicR/nicA	HTH‑type transcriptional repressor NicR/nicotinate dehydrogenase subunit A

TTGTGACTGCCGCCATTGCCGTCACAGATACGCGGCCTGAGAGATCAAGCGCATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGCCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGATCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACACACACAAACTCGGGGGCTCGGCACAGCGCGATGCGCCGCGCGGGCGGCGCTCGGTTTCCCGGGCGCCGACAATCTTCATCC  >  NC_002947/4449492‑4449785                                                                                                                                                    |                                                                                                                                                   ttgtGACTGCCGCCATTGCCGTCACAGATACGCGGCCTGAGAGATCAAGCGCATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGCCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCCTGCTgg                                                                                                                                                    <  5:190764/148‑1 (MQ=255) ttGTGACTGCCGCCATTGCCGTCACAGATACGCGGCCTGAGAGATCAAGCGCATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGAGACAGGCCGCCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCCTGCTGGc                                                                                                                                                   <  3:69463‑M2/149‑2 (MQ=255)      aCTGCCGCCATTGCCGTCACAGATACGCGGCCTGAGAGATCAAGCGCATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGCCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCCTGCTGGCCAAtc                                                                                                                                              <  8:12245/149‑1 (MQ=255)          ccgccATTGCCGTCACAGATACGCGGCCTGAGAGATCAAGCGCATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGCCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCCTGCTGGCCAATCTGCa                                                                                                                                          >  4:74486/1‑149 (MQ=255)                        acaGATACGCGGCCTGAGAGATCAAGCGCATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGCCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGATCACCg                                                                                                                            <  2:250435/149‑1 (MQ=255)                                     cTGAGAGATCAAGCGCATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGCCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGATCACCGTTGCCGCcaccac                                                                                                               >  4:167519/1‑149 (MQ=255)                                       gagagaTCAAGCGCATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGCCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGATCACCGTTGCCGCCaccacc                                                                                                              >  6:39033/1‑148 (MQ=255)                                        agagaTCCACCGCATCGCGAGCAACCTCGCTCACATTGTACACGCTTCGGTGGTTGGACACAGCCCGCCGGAGGATCGGGTACACCCGCGAATGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGATCACCGTTGCGGCCaccacc                                                                                                              <  6:167145/147‑1 (MQ=21)                                        agagaTCAAGCGCATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGCCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGATCACCGTTGCCGCCACCACCg                                                                                                             >  5:269153/1‑148 (MQ=255)                                         gagaTCAAGCGCATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGCCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGATCACCGTTGCCGCCACCACCGTa                                                                                                           <  3:167519/149‑1 (MQ=255)                                             tCAAGCGCATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGCCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCCTGCTGGCCAATCTCCACCTGCGGATCACCGTTGCCGCCACCCCCGTATTcg                                                                                                       >  5:189724/1‑149 (MQ=255)                                               aaGCGCATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGCCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGATCACCGTTGCCGCCACCACCGTATTcgcg                                                                                                     >  7:145225/1‑149 (MQ=255)                                               aaGCGCATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGCCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGATCACCGTTGCCGCCACCACCGTATTcgcg                                                                                                     >  3:103727/1‑149 (MQ=255)                                                aGCGCATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGCCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGATCACCGTTGCCGCCACCACCGTATTCGCgg                                                                                                    <  5:246749/149‑1 (MQ=255)                                                         cgAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGCCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGATCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCg                                                                                           >  7:216358/1‑149 (MQ=255)                                                               aGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGCCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGATCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTa                                                                                     <  3:74486/149‑1 (MQ=255)                                                               aGCTCGCGCACATTGGACACGCATCGGTGGATCGACACAGGCCGCCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGATCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTa                                                                                     <  1:185575/149‑1 (MQ=255)                                                                gctcgctcACATTGGACACGCATCGGTGGTTGGACACAGGCCGCCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGATCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTac                                                                                    <  5:39033/149‑1 (MQ=255)                                                                        acaTTGGACACGCATCGGTGGTTGGACACAGGCCGCCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGATCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTAcacacaca                                                                             >  5:268364/1‑148 (MQ=255)                                                                            tGGACACGCATCGGTGGTTGGACACAGGCCGCCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGATCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACACACACAAACTc                                                                        >  7:110906/1‑149 (MQ=255)                                                                              gACACGCATCGGTGGTTGGACACAGGCCGCCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGATCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACACACACAAACTCgg                                                                      <  4:103727/149‑1 (MQ=255)                                                                              gACACGCATCGGTGGTTGGACACAGGCCGCCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGATCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACACACACAAACTCgg                                                                      <  8:216358/149‑1 (MQ=255)                                                                               acacGCATCGGTGGTTGGACACAGGCCGCCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGATCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACACACACAAACTCggg                                                                     <  7:214558/149‑1 (MQ=255)                                                                                     aTCGGTGGTTGGACACAGGCCGCCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCCTGCTGGccaaccaccgatgcgtgtccaatgtgagcgagcttgctcgcgatgcgcttgatctctcaggccgcgtatctgt                                                                           <  2:101341‑M2/137‑74 (MQ=255)                                                                                         gtggtTGGACACAGGCCGCCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGATCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACACACACAAACTCGGGGGCTCGGca                                                            >  2:87289/1‑148 (MQ=255)                                                                                          tggtTGGACACAGGCCGCCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGATCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACACACACAAACTCGGGGGCTCGGca                                                            >  2:254323/1‑147 (MQ=255)                                                                                           ggtTGGACACAGGCCGCCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGATCCCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACACACACAAACTCGGGGGCTCGGCACAg                                                         >  7:42320/1‑149 (MQ=255)                                                                                                 acacAGGCCGCCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGATCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACACACACAAACTCGGGGGCTCGGCACAGCGCGAt                                                   >  1:103452/1‑149 (MQ=255)                                                                                                        ccgccgTAGGAGCGGGTTCACCCGCGAATGCGCCGGCCCTGCTGGccaaccaccgaagcgtgtccaatgtgagcgagcttgctcgcgatgcgcttgatctctcaggccgcgtatctgtcacgccaatggcggcagtaacaacaatctt                                             <  4:178605‑M2/148‑104 (MQ=255)                                                                                                         cgccgTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCCTGCTGGccaaccaccgatgcgtgtccaatgtgagcgagcttgctcgcgatgcgcttgatctctcaggccgcgtatctgtgacggcaatggcggcagtcacaacaatcttca                                           >  3:178605‑M2/1‑44 (MQ=255)                                                                                                                 gAGCGGGTTCACCCGCGAATGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGATCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACACACACAAACTCGGGGGCTCGGCACAGCGCGATGCGCCGCGCGggcggc                                   >  8:204000/1‑149 (MQ=255)                                                                                                                           aCCCACGAATGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGATCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACACACACAAACTCGGGGGCTCGGCACAGCGCGATGCGCCGCGCGGGCGGCGCTCGGTTTc                         <  4:181713/149‑1 (MQ=255)                                                                                                                             ccGCGAATGGGCCGGCCCTGCTGGTTAATCTCCACCTGCCGATCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTc                                                                                        >  4:168656/1‑84 (MQ=255)                                                                                                                             ccGCGAATGGGCCGGCCCTGCTGGTTAATCTCCACCTGCCGATCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTc                                                                                        <  3:168656/84‑1 (MQ=255)                                                                                                                             ccGCGAATGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGATCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACACACACAAACTCGGGGGCTCGGCACAGCGCGATGCGCCGCGCGGGCGGCGCTCGGTTTccc                       >  6:146131/1‑149 (MQ=255)                                                                                                                             ccGCGAATGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGATCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACACACACAAACTCGGGGGCTCGGCACAGCGCGATGCGCCGCGCGGGCGGCGCTCGGTTTccc                       >  6:179565/1‑149 (MQ=255)                                                                                                                             ccGCGAATGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGATCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACACACACAAACTCGGGGGCTCGGCACAGCGCGATGCGCCGCGCGGGCGGCGCTCGGTTTccc                       <  1:234237/149‑1 (MQ=255)                                                                                                                                   aTGGGCCGGCACTGCTGGCCAATCTCCACCTGCCGATCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACACACACAAACTCGGGGGCTCGGCACAGCGCGATGCGCCGCGCGGGCGGCTCTCGGTTTCCCGGtcgc                 <  4:69463/149‑1 (MQ=255)                                                                                                                                    tGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGATCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACACACACAAACTCGGGGGCTCGGCACAGCGCGATGCGCCGCGCGGGCGGCGCTCGGTTTCCCGGGCGcc                <  6:268364/149‑1 (MQ=255)                                                                                                                                      ggccggccCTGCTGGCCAATCTCCACCTGCCGATCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACACACACAAACTCGGGGGCTCGGCACAGCGCGATGCGCCGCGCGGGCGGCGCTCGGTTTCCCGGGCGCCGa              >  3:40003/1‑149 (MQ=255)                                                                                                                                       gccggccCTGCTGGCCAATCTCCACCTGCCGATCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACACACACAAACTCGGGGGCTCGGCACAGCGCGATGCGCCGCGCGGGCGGCGCTCGGTTTCCCGGGCGCCGa              >  2:151439/1‑148 (MQ=255)                                                                                                                                        ccggccCTGCTGGCCAATCTCCACCTGCCGATCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACACACACAAACTCGGGGGCTCGGCACAGCGCGATGCGCCGCGCGGGCGGCGCTCGGTTTCCCGGGCGCCGAc             >  4:248213/1‑148 (MQ=255)                                                                                                                                            cccTGCTGGCCAATCTCCACCTGCCGATCACCGTTGCCGCCACCACCGTATTTGTGGGTAACCTTTTTCTTTCACACACAAACTCGGGGGCTCGGCACAGCGCGATGCGCCGCGCGGGCGGCGCTCGGTTTCCCGGGCGCCGACAATCt        <  1:87289/149‑1 (MQ=37)                                                                                                                                            cccTGCTGGCCAATCTCCACCTGCCGATCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACACACACAAACTCGGGGGCTCGGCACAGCGCGATGCGCCGCGCGGGCGGCGCTCGGTTTCCCGGGCGCCGACAAt          >  4:262679/1‑147 (MQ=255)                                                                                                                                            cccTGCTGGCCAATCTCCACCTGCCGATCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACACACACAAACTCGGGGGCTCGGCACAGCGCGATGCGCCGCGCGGGCGGCGCTCGGTTTCCCGGGCGCCGACAAt          <  3:262679/147‑1 (MQ=255)                                                                                                                                            cccTGCTGGCCAATCTCCACCTGCCGATCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACACACACAAACTCGGGGGCTCGGCACAGCGCGATGCGCCGCGCGGGCGGCGCTCGGTTTCCCGGGCGCCGACAATCt        <  7:204000/149‑1 (MQ=255)                                                                                                                                                 ctgGCCAATCTCCACCTGCCGATCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACACACACAAACTCGGGGGCTCGGCACAGCGCGATGCGCCGCGCGGGCGGCGCTCGGTTTCCCGGGCGCCGACAATCTTCAt    <  1:151439/148‑1 (MQ=255)                                                                                                                                                  tgGCCAATCTCCACCTGCCGATCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACACACACAAACTCGGGGGCTCGGCACAGCGCGATGCGCCGCGCGGGCGGCGCTCGGTTTCCCGGGCGCCGACAATCTTCATcc  >  8:228995/1‑149 (MQ=255)                                                                                                                                                    gCCAATCTCCACCTGCCGATCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACACACACAAACTCGGGGGCTCGGCACAGCGCGATGCGCCGCGCGGGCGGCGCTCGGTTTCCCGGGCGCCGACAATCTTCATcc  <  7:228995/147‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                   TTGTGACTGCCGCCATTGCCGTCACAGATACGCGGCCTGAGAGATCAAGCGCATCGCGAGCAAGCTCGCTCACATTGGACACGCATCGGTGGTTGGACACAGGCCGCCGTAGGAGCGGGTTCACCCGCGAATGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGATCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACACACACAAACTCGGGGGCTCGGCACAGCGCGATGCGCCGCGCGGGCGGCGCTCGGTTTCCCGGGCGCCGACAATCTTCATCC  >  NC_002947/4449492‑4449785

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.