New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5118958 =	49 (1.160)	3 (0.070)	3/252	NT	5.4%	coding (732/1341 nt)	PP_4505	sensor histidine kinase
	?	NC_002947	5119003 =	57 (1.380)					coding (777/1341 nt)	PP_4505	sensor histidine kinase

TTGTTCGGCATCCACCCGGGCCAGGGCGAGGATTTCGCTGATCAGGTCTTCCAGGCGGTCGCATTCGCGGGTCAGGCGCGGCCACAGCGCTTGCCGCTGCTCAGGCTCGGCGCGTTCGGCCAGGGCCAGGGCGATGCGCAGCCGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5119105‑5118958 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccTGAGCAGCGGCAAGCGCTGTGGCCGCGCCTGACCCGCGAATGCGACCGCCTGGAAGACCTGATCAGCGAAATCCTCGCCCTGGCCCGGGTGGATGCCGAACAAGCC  >  NC_002947/5119003‑5119108                                                                                                                                                                                                                                                                TTGTTCGGCATCCACCCGGGCCAGGGCGAGGATTTCGCTGATCAGGTCTTCCAGGCGGTCGCATTCGCGGGTCAGGCGCGGCCACAGCGCTTGCCGCTGCTCAGGCTCGGCGCGTTCGGCCAGGGCCAGGGCGATGCGCAGCCGGGC                                                                                                             >  3:49460/1‑147                                                                                                     TCAGGCTCGGCGCGTTCGGCCAGGGCCAGGGCGATGCGCAGCCGGGCCTGAGCAGCGGCAAGCGCTGTGGCCGCGCCTGACCCGCGAATGCGACCGCCTGGAAGACCTGATCAGCGAAATCCTCGCCCTGGCCCGGGTGGATGCCGAA        >  3:220042/1‑148                                                                                                       AGGCTCGGCGCGTTCGGCCAGGGCCAGGGCGATGCGCAGCCGGGCCTGAGCAGCGGCAAGCGCTGTGGCCGCGCCTGACCCGCGAATGCGACCGCCTGGAAGACCTGATCAGCGAAATCCTCGCCCTGGCCCGGGTGGATGCCGAA        <  4:220042/146‑1                                                                                                           TCGGCGCGTTCGGCCAGGGCCAGGGCGATGCGCAGCCGGGCCTGAGCAGCGGCAAGCGCTGTGGCCGCGCCTGACCCGCGAATGCGACCGCCTGGAAGACCTGATCAGCGAAATCCTCGCCCTGGCCCGGGTGGATGCCGAACAAGCC  >  3:90084/1‑148                                                                                                                                                                                                                                                                TTGTTCGGCATCCACCCGGGCCAGGGCGAGGATTTCGCTGATCAGGTCTTCCAGGCGGTCGCATTCGCGGGTCAGGCGCGGCCACAGCGCTTGCCGCTGCTCAGGCTCGGCGCGTTCGGCCAGGGCCAGGGCGATGCGCAGCCGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5119105‑5118958 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccTGAGCAGCGGCAAGCGCTGTGGCCGCGCCTGACCCGCGAATGCGACCGCCTGGAAGACCTGATCAGCGAAATCCTCGCCCTGGCCCGGGTGGATGCCGAACAAGCC  >  NC_002947/5119003‑5119108

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.