New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 5226289 | 56 (1.330) | 4 (0.100) | 4/246 | NT | 7.1% | coding (527/876 nt) | PP_4605 | AraC family transcriptional regulator |
? | NC_002947 | = 5226312 | 51 (1.270) | coding (550/876 nt) | PP_4605 | AraC family transcriptional regulator |
GGAAGCGACCTTTCTGGACGACCCGCAGCAGGCTGGCCGCTTTCGTCAATTGATCCAGCTGGACTGGGACGAGCCCGGCGAGCGCCTGCTGGCCAGCAGCCTGGCGCACGAGATCGTGGACCATGCGCTGCTCAGCCAGGTCGGGTTGCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5226137‑5226289 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccaGCCCGCCTTTCAGGCGCAGGCCTTGGCGCAACCCGACCTGGCTGAGCAGCGCATGGTCCACGATCTCGTGCGCCAGGCTGCTGGCCAGCAGGCGCTCGCCGGGCTCGTCCCAGTCCAGCTGGATCAATTGACGAAAGCGGC < NC_002947/5226312‑5226172 GGAAGCGACCTTTCTGGACGACCCGCAGCAGGCTGGCCGCTTTCGTCAATTGATCCAGCTGGACTGGGACGAGCCCGGCGAGCGCCTGCTGGCCAGCAGCCTGGCGCACGAGATCGAGGACCATGCGCTGCTCAGCCAGGTCGGGTTGC < 6:265863/149‑1 GAAGCGACCTTTCTGGACGACCCGCAGCAGGCTGGCCGCTTTCGTCAATTGATCCAGCTGGACTGGGACGAGCCCGGCGAGCGCCTGCTGGCCAGCAGCCTGGCGCACGAGATCGTGGACCATGCGCTGCTCAGCCAGGTCGGGTTGCG > 8:127899/1‑149 AGCGACCTTTCTGGACGACCCGCAGCAGGCTGGCCGCTTTCGTCAATTGATCCAGCTGGACTGGGACGAGCCCGGCGAGCGCCTGCTGGCCAGCAGCCTGGCGCACGAGATCGTGGACCATGCGCTGCTCAGCCAGGTCGGGTTGCGCC < 1:233166/149‑1 GCGACCTTTCTGGACGACCCGCAGCAGGCTGGCCGCTTTCGTCAATTGATCCAGCTGGACTGGGACGAGCCCGGCGAGCGCCTGCTGGCCAGCAGCCTGGCGCACGAGATCGTGGACCATGCGCTGCTCAGCCAGGTCGGGTTGCGCag > 1:44141/1‑147 CCGCAGCAGGCTGGCCGCTTTCGTCAATTGATCCAGCTGGACTGGGACGAGCCCGGCGAGCGCCTGCTGGCCAGCAGCCTGGCGCACGAGATCGTGGACCATGCGCTGCTCAGCCAGGTCGGGTTGCGCCAGCCCGCCTTTCAGGCG > 8:24550/1‑147 CCGCAGCAGGCTGGCCGCTTTCGTCAATTGATCCAGCTGGACTGGGACGAGCCCGGCGAGCGCCTGCTGGCCAGCAGCCTGGCGCACGAGATCGTGGACCATGCGCTGCTCAGCCAGGTCGGGTTGC < 3:152068/127‑1 CCGCAGCAGGCTGGCCGCTTTCGTCAATTGATCCAGCTGGACTGGGACGAGCCCGGCGAGCGCCTGCTGGCCAGCAGCCTGGCGCACGAGATCGTGGACCATGCGCTGCTCAGCCAGGTCGGGTTGC > 4:152068/1‑127 GCCGCTTTCGTCAATTGATCCAGCTGGACTGGGACGAGCCCGGCGAGCGCCTGCTGGCCAGCAGCCTGGCGCACGAGATCGTGGACCATGCGCTGCTCAGCCAGGTCGGGTTGCGCCAGCCCGCCTTTCAGGCGCAGGCCTTGGCGCAA < 7:24550/149‑1 AATTGATCCAGCTGGACTGGGACGAGCCCGGCGAGCGCCTGCTGGCCAGCAGCCTGGCGCACGAGATCGTGGACCATGCGCTGCTCAGCCAGGTCGGGTTGCGCCAGCCCGCCTTTCAGGCGCAGGCCTTGGCGCAAC > 7:115788/1‑138 AATTGATCCAGCTGGACTGGGACGAGCCCGGCGAGCGCCTGCTGGCCAGCAGCCTGGCGCACGAGATCGTGGACCATGCGCTGCTCAGCCAGGTCGGGTTGCGCCAGCCCGCCTTTCAGGCGCAGGCCTTGGCGCAAC < 8:115788/138‑1 GCGCCAGCCCGCCTTTCAGGCGCAGGCCTTGGCGCAACCCGACCTGGCTGAGCAGCGCATGGTCCACGATCTCGTGCGCCAGGCTGCTGGCCAGCAGGCGCTCGCCGGGCTCGTCCCAGTCCAGCTGGATCAATTGACGAAAGCGGC > 2:77442/1‑147 GGAAGCGACCTTTCTGGACGACCCGCAGCAGGCTGGCCGCTTTCGTCAATTGATCCAGCTGGACTGGGACGAGCCCGGCGAGCGCCTGCTGGCCAGCAGCCTGGCGCACGAGATCGTGGACCATGCGCTGCTCAGCCAGGTCGGGTTGCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5226137‑5226289 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccaGCCCGCCTTTCAGGCGCAGGCCTTGGCGCAACCCGACCTGGCTGAGCAGCGCATGGTCCACGATCTCGTGCGCCAGGCTGCTGGCCAGCAGGCGCTCGCCGGGCTCGTCCCAGTCCAGCTGGATCAATTGACGAAAGCGGC < NC_002947/5226312‑5226172 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |