New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 5226289 | 56 (1.330) | 4 (0.100) | 4/246 | NT | 7.1% | coding (527/876 nt) | PP_4605 | AraC family transcriptional regulator |
? | NC_002947 | = 5226312 | 51 (1.270) | coding (550/876 nt) | PP_4605 | AraC family transcriptional regulator |
GCCGCTTTCGTCAATTGATCCAGCTGGACTGGGACGAGCCCGGCGAGCGCCTGCTGGCCAGCAGCCTGGCGCACGAGATCGTGGACCATGCGCTGCTCAGCCAGGTCGGGTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGTCGACTACCTCGAGGCACACCTGGACCAGCCCATCACCCTGGACGAGCTGGCGCTGCGCTGCAATCTGTCCGAATACCACTTTGCGCGCATGTTCCGCGCCAGTTTCGGG > NC_002947/5226172‑5226449 | gCCGCTTTCGTCAATTGATCCAGCTGGACTGGGACGAGCCCGGCGAGCGCCTGCTGGCCAGCAGCCTGGCGCACGAGATCGTGGACCATGCGCTGCTCAGCCAGGTCGGGTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCtggcgc > 2:77442‑M2/1‑141 (MQ=255) gCCGCTTTCGTCAATTGATCCAGCTGGACTGGGACGAGCCCGGCGAGCGCCTGCTGGCCAGCAGCCTGGCGCACGAGATCGTGGACCATGCGCTGCTCAGCCAGGTCGGGTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCTGGCGcc < 4:201339/148‑1 (MQ=255) cGCTTTGGTCAATTGATCCAGCTGGAGTGGGACGAGCACGGCGAGCGCCTGCTGGCCAGCAGCCTGGCGCACGAGATCGTGGACCATGCGCTGCTCAGCCAGGTCGGGTTGCGCGAAGGCCTGCGCCTGAAAGGCGGGCTGGCGCCaaa < 4:158907/149‑1 (MQ=255) cGCTTTCGTCAATTGATCCAGCTGGACTGGGACGAGCCCGGCGAGCGCCTGCTGGCCAGCAGCCTGGCGCACGAGATCGTGGACCATGCGCTGCTCAGCCAGGTCGGGTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCTGGCGCCaaa > 3:139125/1‑149 (MQ=255) gTCAATTGATCCAGCTGGACTGGGACGAGCCCGGCGAGCGCCTGCTGGCCAGCAGCCTGGCGCACGAGATCGTGGACCATGCGCTGCTCAGCCAGGTCGGGTTGCGCCAAGGCCTGCGCCTGAACGGCGGGCTGGCGCCAAACCTgcgc > 8:220711/1‑149 (MQ=255) tCAATTGATCCAGCTGGACTGGGACGAGCCCGGCGAGCGCCTGCTGGCCAGCAGCCTGGCGCACGAGATCGTGGACCATGCGCTGCTCAGCCAGGTCGGGTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCTGGCGCCAAACCTGCGcc > 7:34406/1‑149 (MQ=255) ttGATCCAGCTGGACTGGGACGAGCCCGGCGAGCGCCTGCTGGCCAGCAGCCTGGCGCACGAGATCGTGGACCATGCGCTGCTCAGCCAGGTCGGGTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCa < 3:30096/149‑1 (MQ=255) aGCTGGACTGGGACGAGCCCGGCGAGCGCCTGCTGGCCAGCAGCCTGGCGCACGAGATCGTGGACCATGCGCTGCTCAGCCAGGTCGGGTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGTc > 1:258882/1‑149 (MQ=255) gACTGGGACGAGCCCGGCGAGCGCCTGCTGGCCAGCAGCCTGGCGCACGAGATCGTGGACCATGCGCTGCTCAGCCAGGTCGGGTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGt < 4:250159/143‑1 (MQ=255) gACTGGGACGAGCCCGGCGAGCGCCTGCTGGCCAGCAGCCTGGCGCACGAGATCGTGGACCATGCGCTGCTCAGCCAGGTCGGGTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGt > 3:250159/1‑143 (MQ=255) gACTGGGACGAGCCCGGCGAGCGCCTGCTGGCCAGCAGCCTGGCGCACGAGATCGTGGACCATGCGCTGCTCAGCCAGGTCGGGTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGTCGACTa > 6:216971/1‑149 (MQ=255) cTGGGACGAGCCCGGCGAGCGCCTGCTGGCCAGCAGCCTGGCGCACGAGATCGTGGACCATGCGCTGCTCAGCCAGGTCGGGTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGTCGACTAcc > 7:158632/1‑149 (MQ=255) ggACGAGCCCGGCGAGCGCCTGCTGGCCAGCAGCCTGGCGCACGAGATCGTGGACCATGCGCTGCTCAGCCAGGTCGGGTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGTCGACTACCTc < 2:57000/148‑1 (MQ=255) cGAGCCCGGCGAGCGCCTGCTGGCCAGCAGCCTGGCGCACGAGATCGTGGACCATGCGCTGCTCAGCCAGGTCGGGTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGTCGACTACCTCGAgg < 7:127899/149‑1 (MQ=255) cGAGCGCCTGCTGGCCAGCAGCCTGGCGCACGAGATCGTGGACCATGCGCTGCTCAGCCAGGTCGGGTTGCGCCAAGGCCTGCGCCCGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGTCGACTACCTCGAGGCACACCTgg < 2:81255/149‑1 (MQ=255) gcgcCTGCTGGCCAGCAGCCTGGCGCACGAGATCGTGGACCATGCGCTGCTCAGCCAGGTCGGGTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGTCGACTACCTCGAGGCACACCTGGAc > 7:83391/1‑148 (MQ=255) cgcCTGCTGGCCAGCAGCCTGGCGCACGAGATCGTGGACCATGCGCTGCTCAGCCAGGTCGGGTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGTCGACTACCTCGAGGCACACCTGGAc > 4:194026/1‑147 (MQ=255) ccTGCTGGCCAGCAGCCTGGCGCACGAGATCGTGGACCATGCGCTGCTCAGCCAGGTCGGGTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGTCGACTACCTCGAGGCACACCTGGACCAGc < 8:83391/149‑1 (MQ=255) ctgctgGCCAGCAGCCTGGCGCACGAGATCGTGGACCATGCGCTGCTCAGCCAGGTCGGGTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGTCGACTACCTCGAGGCACACCTGGACCAGcc > 4:10766/1‑149 (MQ=255) ctgGCCAGCAGCCTGGCGCACGAGATCGTGGACCATGCGCTGCTCAGCCAGGTCGGGTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGTCGACTACCTCGAGGCACACCTGGACCAGccc < 4:139125/147‑1 (MQ=255) ctgGCCAGCAGCCTGGCGCACGAGATCGTGGACCATGCGCTGCTCAGCCAGGTCGGGTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGTCGACTACCTCGAGGCACACCTGGACCAGCCCa < 5:216971/148‑1 (MQ=255) gCCAGCAGCCTGGCGCACGAGATCGTGGACCATGCGCTGCTCAGCCAGGTCGGGTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGTCGACTACCTCGAGGCACACCTGGACCAGCCCATc < 2:258882/147‑1 (MQ=255) cagcagCCTGGCGCACGAGATCGTGGACCATGCGCTGCTCAGCCAGGTCGGGTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGTCGACTACCTCGAGGCACACCTGGACCAGCCCATCAccc > 7:46450/1‑149 (MQ=255) cTGGCGCACGAGATCGTGGACCATGCGCTGCTCAGCCAGGTCGGGTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGTCGACTACCTCGAGGCACACCTGGACCAGCCCATCACCCTGGACGa < 2:88094/149‑1 (MQ=255) cgcACGAGATCGTGGACCATGCGCTGCTCAGCCAGGTCGGGTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGTCGACTACCTCGAGGCACACCTGGACCAGCCCATCACCCTGGACGAGCTg < 3:10766/149‑1 (MQ=255) cGAGATCGTGGACCATGCGCTGCTCAGCCAGGTCGGGTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGTCGACTACCTCGAGGCACACCTGGACCAGCCCATCACCCTGGACGAGCTGgcgc > 8:226979/1‑149 (MQ=255) gaTCGTGGACCATGCGCTGCTCAGCCAGGTCGGGTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGTCGACTACCTCGAGGCACACCTGGACCAGCCCATCACCCTGGACGAGCTGgcgctgc > 7:98405/1‑149 (MQ=255) tCGTGGACCATGCGCTGCTCAGCCAGGTCGGGTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGTCGACTACCTCGAGGCACACCTGGACCAGCCCATCACCCTGGACGAGCTGgcgctgcgc > 7:185685/1‑149 (MQ=255) cGTGGACCATGCGCACCTCAGCCAGCTCGGGTTCCGCCAACGCCTGCGACTCAAAGGCGTGCTGGCGCCAAACCTCCCCCGCCAGTTCGTCGACTACCTCGAGGCACACCTGGACCAGCCCAAAACCCTGGACGAGCTGgcgcagcgct > 6:53086/1‑149 (MQ=255) gTGGACCATGCGCTGCTCAGCCAGGTCGGGTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGTCGACTACCTCGAGGCACACCTGGACCAGCCCATCACCCTGGACGAGCTGGcgctgcgctg > 6:224712/1‑149 (MQ=255) tGGACCATGCGCTGCTCAGCCAGGTCGGGTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGTCGCCTACCTCGAGGCACACCTGGACCAGCCCAACACACAGGACGAGCTGGcgctgcgctg > 2:78845/1‑148 (MQ=255) gACCATGCGCTGCTCAGCCAGGTCGGGTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGTCGACTACCTCGa > 8:9855/1‑98 (MQ=255) gACCATGCGCTGCTCAGCCAGGTCGGGTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGTCGACTACCTCGa < 7:9855/98‑1 (MQ=255) gACCATGCGCTGCTCAGCCAGGTCGGGTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGTCGACTACCTCGAGGCACACCTGGACCAGCCCATCACCCTGGACGAGCTGGCGCTGCGCTGCaa > 8:192055/1‑149 (MQ=255) aCCATGCGCTGCTCAGCCAGGTCGGGTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGTCGACTACCTCGAGGCACACCTGGACCAGCCCATCACCCTGGACGAGCTGGCGCTGCGCTGCAAt < 8:34406/149‑1 (MQ=255) tGCGCTGCTCAGCCAGGTCGGGTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGTCGACTACCTCGAGGCACACCTGGACCAGCCCATCACCCTGGACGAGCTgg < 3:243841/131‑1 (MQ=255) tGCGCTGCTCAGCCAGGTCGGGTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGTCGACTACCTCGAGGCACACCTGGACCAGCCCATCACCCTGGACGAGCTgg > 4:243841/1‑131 (MQ=255) cgcTGCTCAGCCAGGTCGGGTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGTCGACTACCTCGAGGCACACCTGGACCAGCCCATCACCCTGGACGAGCTGGCGCTGCGCTGCAATCTGTcc < 3:194026/149‑1 (MQ=255) cgcTGCTCAGCCAGGTCGGGTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGTCGACTACCTCGAGGCACACCTGGACCAGCCCATCACCCTGGACGAGCTGGCGCTGCGCTGCAATCTGTc < 8:185685/148‑1 (MQ=255) cgcTGCTCAGCCAGGTCGGGTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGTCGACTACCTCGAGGCACACCTGGACCAGCCCATCACCCTGGACGAGCTGGCGCTGCGCTGCAATCTGTc < 8:46450/148‑1 (MQ=255) gctgctCAGCCAGGTCGGGTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGTCGACTACCTCGAGGCACACCTGGACCAGCCCATCACCCTGGACGAGCTGGCGCTGCGCTGCAATCTGTcc > 6:122949/1‑148 (MQ=255) tCAGCCAGGTCGGGTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGTCGACTACCTCGAGGCACACCTGGACCAGCCCATCACCCTGGACGAGCTGGCGCTGCGCTGCAAt > 5:236052/1‑137 (MQ=255) tCAGCCAGGTCGGGTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGTCGACTACCTCGAGGCACACCTGGACCAGCCCATCACCCTGGACGAGCTGGCGCTGCGCTGCAAt < 6:236052/137‑1 (MQ=255) tCAGCCAGGTCGGGTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGTCGACTACCTCGAGGCACACCTGGACCAGCCCATCACCCTGGACGAGCTGGCGCTGCGCTGCAATCTGTCCGAATAc > 2:227065/1‑149 (MQ=255) tCAGCCAGGTCGGGTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGTCGACTACCTCGAGGCACACCTGGACCAGCCCATCACCCTGGACGAGCTGGCGCTGCGCTGCAATCTGTCCGAATAc > 2:89373/1‑149 (MQ=255) aGCCAGGTCGGGTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGTCGACTACCTCGAGGCACACCTGGACCAGCCCATCACCCTGGACGAGCTGGCGCTGCGCTGCAATCTGTCCGAATACCa < 1:89373/149‑1 (MQ=255) cAGGTCGGGTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGTCGACTACCTCGAGGCACACCTGGACCAGCCCATCACCCTGGACGAGCTGGCGCTGCGCTGCAATCTGTCCGAATACCACtt > 8:253136/1‑149 (MQ=255) aGGTCGGGTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGTCGACTACCTCGAGGCACACCTGGACCAGCCCATCACCCTGGACGAGCTGGCGCTGCGCTGCAATCTGTCCGAATACCACttt < 8:98405/149‑1 (MQ=255) gggTTGCGCCATGGCCTGCGCCTGAATGGCGGGATGGCGACAAAGCTGCGCCGGCAGTTTGTCGACTACCTCGAGGCACACCTGGACCAGCCCATCACCCTGGACGAGCTGGCGCTGCGCTGCAATCTGTCCGAATACCACTTTgcgc < 5:53086/148‑1 (MQ=255) gTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCtggcgcaacccgacctggctgagcagcgcatggtccacgatctcgtgcgccaggctgctggccagcaggcgctcgccgggctcgtcccagtccagctggatcaatt < 8:115788‑M2/138‑107 (MQ=255) gTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCtggcgcaacccgacctggctgagcagcgcatggtccacgatctcgtgcgccaggctgctggccagcaggcgctcgccgggctcgtcccagtccagctggatcaatt > 7:115788‑M2/1‑32 (MQ=255) ttGCGCCAAGGCCTGCGCCTGAAAGGCGGGCtggcgcaacccgacctggctgagcagcgcatggtccacgatctcgtgcgccaggctgctggccagcaggcgctcgccgggctcgtcccagtccagctggatcaattgacgaaagcggc < 7:24550‑M2/149‑119 (MQ=255) cAAGGCCTGCGCCTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGTCGACTACCTCGAGGCACACCTGGACCAGCCCATCACCCTGGACGAGCTGGCGCTGCGCTGCAATCTGTCCGAATACCACTTTGCGCGCATGTTCcg > 6:267576/1‑149 (MQ=255) cTGCGCCTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGTCGACTACCTCGAGGCACACCTGGACCAGCCCATCACCCTGGACGAGCTGGCGCTGCGCTGCAATCTGTCCGAATACCACTTTGCGCGCATGTTCCGCGCCAg > 5:79079/1‑149 (MQ=255) cgcCTGAAAGGCGGGCtggcgcaacccgacctggctgagcagcgcatggtccacgatctcgtgcgccaggctgctggccagcaggcgctcgccgggctcgtcccagtccagctggatcaattgacgaaagcggccagcctgctgcgg > 8:24550‑M2/1‑16 (MQ=255) gcCTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGTCGACTACCTCGAGGCACACCTGGACCAGCCCATCACCCTGGACGAGCTGGCGCTGCGCTGCAATCTGTCCGAATACCACTTTGCGCGCATGTTCCGCGCCAGTTTc < 8:158632/149‑1 (MQ=255) gcCTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGTCGACTACCTCGAGGCACACCTGGACCAGCCCATCACCCTGGACGAGCTGGCGCTGCGCTGCAATCTGTCCGAATACCACTTTGCGCGCATGTTCCGCGCCAGTTTc < 1:227065/149‑1 (MQ=255) ccTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGTCGACTACCTCGAGGCACACCTGGACCAGCCCATCACCCTGGACGAGCTGGCGCTGCGCTGCAATCTGTCCGAATACCACTTTGCGCGCATGTACCGCGCCAGTTTCg < 7:226979/149‑1 (MQ=255) tGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGTCGACTACCTCGAGGCACACCTGGACCAGCCCATCACCCTGGACGAGCTGGCGCTGCGCTGCAATCTGTCCGAATACCACTTTGCGCGCATGTTCCGCGCCAGTTTCggg > 3:73004/1‑149 (MQ=255) | GCCGCTTTCGTCAATTGATCCAGCTGGACTGGGACGAGCCCGGCGAGCGCCTGCTGGCCAGCAGCCTGGCGCACGAGATCGTGGACCATGCGCTGCTCAGCCAGGTCGGGTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGTCGACTACCTCGAGGCACACCTGGACCAGCCCATCACCCTGGACGAGCTGGCGCTGCGCTGCAATCTGTCCGAATACCACTTTGCGCGCATGTTCCGCGCCAGTTTCGGG > NC_002947/5226172‑5226449 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |