| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5382398 = | 32 (0.760) | 4 (0.130) | 4/188 | NT | 19.4% | intergenic (+18/+115) | smpB/pdhR | SsrA‑binding protein/DNA‑binding transcriptional regulator LldR |
| ? | NC_002947 | 5382496 = | 10 (0.330) | intergenic (+116/+17) | smpB/pdhR | SsrA‑binding protein/DNA‑binding transcriptional regulator LldR | |||||
TGCATGAGGCGCACGAAGAAGCCCAGCGGGTGGCGCGGGCAGAGCGGCGCAGCGGGCGCTGAGGCTTTTATGGGCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATA‑G‑GCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5382574‑5382398‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcctgtgggagcgggcttgcccgcgaagaggccggTACTGCCCATAAAAGCCTCAGCG‑CCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTGGACACCTCCCGCGCATCCTCCGCCCTGCCCTC > NC_002947/5382496‑5382638 TGCATGAGGCGCACGAAGAAGCCCAGCGGGTGGCGCGGGCAGAGCGGCGCAGCGGGCGCTGAGGCTTTTATGGGCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATA‑G‑GCGCCGGGCTTGAATCTGGTGCCATTCCTGTG > 8:194141/1‑149 CATGAGGCGCACGAAGAAGCCCAGCGGGTGGCGCGGGCAGAGCGGCGCAGCGGGCGCTGAGGCTTTTATGGGCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATA‑G‑GCGCCGGGCTTGAATCTGGTGCCATTCCTGTG < 2:99083/147‑1 ATGAGGCGCACGAAGAAGCCCAGCGGGTGGCGCGGGCAGAGCGGCGCAGCGGGCGCTGAGGCTTTTATGGGCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATA‑G‑GCGCCGGGCTTGAATCTGGTGCCATTCCTGTGG < 1:252947/147‑1 ATGAGGCGCACGAAGAAGCCCAGCGGGTGGCGCGGGCAGAGCGGCGCAGCGGGCGCTGAGGCTTTTATGGGCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATA‑G‑GCGCCGGGCTTGAATCTGGTGCCATTCCTGTGG > 2:252947/1‑147 GCGCACGAAGAAGCCCAGCGGGTGGCGCGGGCAGAGCGGCGCAGCGGGCGCTGAGGCTTTTATGGGCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCCCACGCTA‑G‑GCGCCGGGCGTGAATCTGGTGCCCTTGCTGTGGGCGCGGG > 8:34580/1‑149 CGCACGAAGAAGCCCAGCGGGTGGCGCGGGCAGAGCGGCGCAGCGGGCGCTGAGGCTTTTATGGGCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATA‑G‑GCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGC < 6:234760/149‑1 GAAGAAGCCCAGCGGGTGGCGCGGGCAGAGCGGCGCAGCGGGCGCTGATGCTTTTATGGGCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATATG‑GCGCCGGGCTTGAATCTGGTGCCATTCCTGT < 1:165710/135‑1 GAAGAAGCCCAGCGGGTGGCGCGGGCAGAGCGGCGCAGCGGGCGCTGAGGCTTTTATGGGCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATA‑G‑GCGCCGGGCTTGAATCTGGTGCCATTCCTGT > 2:165710/1‑134 AGCCCAGCGGGTGGCGCGGGCAGAGCGGCGCAGCGGGCGCTGAGGCTTTTATGGGCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCCCAGGGTA‑G‑GCGGCGGGCGTGAATCTGGTGGCAGTGCTGGGGGAGCGGGCTTGCCCGCG > 7:82672/1‑148 AGCGGGTGGCGCGGGCAGAGCGGCGCAGCGGGCGCTGAGGCTTTTATGGGCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATA‑GCGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAG < 1:74135/149‑1 CGGGTGGCGCGGGCAGAGCGGCGCAGCGGGCGCTGAGGCTTTTATGGGCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATA‑G‑GCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCC < 7:194141/149‑1 CCCACAGGATA‑G‑GCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCG‑CCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGC < 6:127282/143‑1 CCCACAGGATA‑G‑GCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCG‑CCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGC > 5:127282/1‑143 ACAGGATA‑G‑GCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCG‑CCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATG > 7:167592/1‑146 ACAGGATA‑G‑GCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCG‑CCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATG < 8:167592/146‑1 TCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGTGCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTGGA > 1:77276/1‑149 CTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCG‑CCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGTGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTGGACAC > 2:32357/1‑149 CTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCG‑CCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTGGACAC < 2:74135/149‑1 TGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCG‑CCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTGGACACCTC < 8:231791/149‑1 CGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCG‑CCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTGGACACCTCCCGCGCATCCTCCGCC < 1:99083/149‑1 AGAGGCCGGTACTGCCCATAAAAGCCTCAGCG‑CCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTGGACACCTCCCGCGCATCCTCCGCCCTGCC > 6:116839/1‑149 AGAGGCCGGTACTGCCCATAAAAGCCTCAGCG‑CCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTGGACACCTCCCGCGCATCCTCCGCCCTGCC < 2:213234/149‑1 GGCCGGTACTGCCCATAAAAGCCTCAGCG‑CCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTGGACACCTCCCGCGCATCCTCCGCCCTGCCCTC < 2:183048/149‑1 GCCGGTACTGCCCATAAAAGCCTCAGCG‑CCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTGGACACCTCCCGCGCATCCTCCGCCCTGCCCTC > 7:201760/1‑148 TGCATGAGGCGCACGAAGAAGCCCAGCGGGTGGCGCGGGCAGAGCGGCGCAGCGGGCGCTGAGGCTTTTATGGGCAGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATA‑G‑GCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5382574‑5382398‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcctgtgggagcgggcttgcccgcgaagaggccggTACTGCCCATAAAAGCCTCAGCG‑CCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTGGACACCTCCCGCGCATCCTCCGCCCTGCCCTC > NC_002947/5382496‑5382638 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |