| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5813248 | 54 (1.280) | 4 (0.100) | 4/242 | NT | 7.4% | coding (169/1737 nt) | argS | arginine‑‑tRNA ligase |
| ? | NC_002947 | = 5813287 | 50 (1.260) | coding (208/1737 nt) | argS | arginine‑‑tRNA ligase | |||||
CCAGCTGATCCAGCAAGCCCTCACCCAACTCGTCACCGACGGTGTGCTGCCTGAAGGGCTGTCGCCGGCGATCCAGGTGGAAAACGCCC‑GGGACAAGACCCACGGCGACTTCGCCAGCAACATCGCCATGATGCTGGCCAAGCCGGCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5813097‑5813248‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccggcaGGGCGTTGATCAGTTTTTCGGCGAGGTCGCGCGGCTTCATGCCGGCCGGCTTGGCCAGCATCATGGCGATGTTGCTGGCGAAGTCGCCGTGGGTCTTGTCCCGGGCGTTTTCCACCTGGATCGCCGGCGACAGCCCTTCAGG < NC_002947/5813287‑5813146 CCAGCTGATCCAGCAAGCCCTCACCCAACTCGTCACCGACGGTGTGCTGCCTGAAGGGCTGTCGCCGGCGATCCAGGTGGAAAACGCCC‑GGGACAAGACCCACGGCGACTTCGCCAGCAACATCGCCATGATGCTGGCCAAGCCGGCC > 1:127764/1‑148CCAGCTGATCCAGCAAGCCCTCACCCAACTCGTCACCGACGGTGTGCTGCCTGAAGGGCTGTCGCCGGCGATCCAGGTGGAAAACGCCC‑GGGACAAGACCCACGGCGACTTCGCCAGCAACATCGCCATGATGCTGGCCAAGCCGGCC < 2:127764/148‑1 GCTGATCCAGCAAGCCCTCACCCAACTCGTCACCGACGGTGTGCTGCCTGAAGGGCTGTCGCCGGCGATCCAGGTGGTAAACGCCC‑GGGACAAGACCCACGGCGACTTCGCCAGCAACATCGCCATGATGCTGGCCAAGCCGGCCGGCA < 1:84359/149‑1 ACCGACGGTGTGCTGCCTGAAGGGCTGTCGCCGGCGATCCAGGTGGAAAACGCCC‑GGGACAAGACCCACGGCGACTTCGCCAGCAACATCGCCATGATGCTGGCCAAGCCGGCCGGCAGGGCGTTGATCAGTTTTTCGGCGAGGTCGCG > 8:154402/1‑149 ACGGTGTGCTGCCTGAAGGGCTGTCGCCGGCGATCCAGGTGGAAAACGCCCGGGGAAAAGACCCACGCCGACTACGCAAGCAACATCGCAATCATCATGGCAAAGCCGCCCGGCAGGGCGTTGATCAGTTTTTCGGCAAGGTCGCGCG > 1:202500/1‑148 CCTGAAGGGCTGTCGCCGGCGATCCAGGTGGAAAACGCCC‑GGGACAAGACCCACCGCGACTTCGCCAGCAACATCGCCATGATGCTGGCCAAGCCGGCCGGCAGGGCGTTGATCAGTTTTTCGGCGAGGTCGCGCGGCTTCATGCCGGC < 7:154402/149‑1 AAGGGCTGTCGCCGGCGATCCAGGTGGAAAACGCCC‑GGGACAAGACGCACGGCGACTTCGCCAGCAACATCGCCATGATGCTGGCCAAGCCGGCCGGCAGGGCGTTGATCAGTTTTTCGGCGAGGTCGCGCGGCTTCATGCCGGCCG < 2:202500/147‑1 GGCGATCCAGGTGGAAAACGCCC‑GGGACAAGACCCACGGCGACTTCGCCAGCAACATCGCCATGATGCTGGCCAAGCCGGCCGGC < 5:113131/85‑1 GGCGATCCAGGTGGAAAACGCCC‑GGGACAAGACCCACGGCGACTTCGCCAGCAACATCGCCATGATGCTGGCCAAGCCGGCCGGC > 6:113131/1‑85 GCCGGCAGGGCGTTGATCAGTTTTTCGGCGAGGTCGCGCGGCTTCATGCCGGCCGGCTTGGCCAGCATCATGGCGATGTTGCTGGCGAAGTCGCCGTGGGTCTTGTCCCGGGCGTTTTCCACCTGGATCGCCGGCGACAGCCCTTCAGG < 3:32331/149‑1 GCCGGCAGGGCGTTGATCAGTTTTTCGGCGAGGTCGCGCGGCTTCATGCCGGCCGGCTTGGCCAGCATCATGGCGATGTTGCTGGCGAAGTCGCCGTGGGTCTTGTCCCGGGCGTTTTCCACCTGGATCGCCGGCGACAGCCCTTCAG < 3:73920/148‑1 GCCGGCAGGGCGTTGATCAGTTTTTCGGCGAGGTCGCGCGGCTTCATGCCGGCCGGCTTGGCCAGCATCATGGCGATGTTGCTGGCGAAGTCGCCGTGGGTCTTGTCCCGGGCGTTTTCCACCTGGATCGCCGGCGACAGCCCTTCAG > 4:73920/1‑148 GCCGGCAGGGCGTTGATCAGTTTTTCGGCGAGGTCGCGCGGCTTCATGCCGGCCGGCTTGGCCAGCATCATGGCGATGTTGCTGGCGAAGTCGCCGTGGGTCTTGTCCCGGGCGTTTTCCACCTGGATCGCCGGCGACAGCCCTTCA < 5:125925/147‑1 GCCGGCAGGGCGTTGATCAGTTTTTCGGCGAGGTCGCGCGGCTTCATGCCGGCCGGCTTGGCCAGCATCATGGCGATGTTGCTGGCGAAGTCGCCGTGGGTCTTGTCCCGGGCGTTTTCCACCTGGATCGCCGGCGACAGCCCTTCA < 6:87104/147‑1 CCAGCTGATCCAGCAAGCCCTCACCCAACTCGTCACCGACGGTGTGCTGCCTGAAGGGCTGTCGCCGGCGATCCAGGTGGAAAACGCCC‑GGGACAAGACCCACGGCGACTTCGCCAGCAACATCGCCATGATGCTGGCCAAGCCGGCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5813097‑5813248‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccggcaGGGCGTTGATCAGTTTTTCGGCGAGGTCGCGCGGCTTCATGCCGGCCGGCTTGGCCAGCATCATGGCGATGTTGCTGGCGAAGTCGCCGTGGGTCTTGTCCCGGGCGTTTTCCACCTGGATCGCCGGCGACAGCCCTTCAGG < NC_002947/5813287‑5813146 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |