New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6050074	38 (0.900)	3 (0.070)	3/250	NT	7.9%	coding (936/2109 nt)	spoT	bifunctional (p)ppGpp synthase/hydrolase
	?	NC_002947	= 6050143	33 (0.810)					coding (1005/2109 nt)	spoT	bifunctional (p)ppGpp synthase/hydrolase

CCGCATCATCGTCGACAAGGTTGACACCTGTTACCGCGTGCTCGGCGCCGTACACAACCTGTACAAGCCGCTGCCCGGACGCTTCAAGGATTACATCGCGATCCCCAAGGCCAACGGCTACCAGTCGTTGCACACCACCCTGTTCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6049927‑6050074 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcGATGCCGTTGTTGGCCATCTCTTCCATTTCGCGGGTGCGAATCTGGATTTCGATGGGCACGCCGTGCATGCCGAACAG  <  NC_002947/6050143‑6050066                                                                                                                                                                                                                                    CCGCATCATCGTCGACAAGGTTGACACCTGTTACCGCGTGCTCGGCGCCGTACACAACCTGTACAAGCCGCTGCCCGGACGCTTCAAGGATTACATCGCGATCCCCAAGGCCAACGGCTACCAGTCGTTGCACACCACCCTGTTCGGC                                                                                <  6:32165/148‑1                                                                 AAGCCGCTGCCCGGACGCTTCAAGGATTACATCGCGATCCCCAAGGCCAACGGCTACCAGTCGTTGCACACCACCCTGTTCGGCGATGCCGTTGTTGGCCATCTCTTCCATTTCGCGGGTGCGAATCTGGATTTCGATGGGCACGCCGT               >  6:119014/1‑149                                                                   GCCGCTGCCCGGACGCTTCAAGGATTACATCGCGATCCCCAAGGCCAACGGCTACCAGTCGTTGCACACCACCCTGTTCGGCGATGCCGTTGTTGGCCATCTCTTCCATTTCGCGGGTGCGAATCTGGATTTCGATGGGCACGCCGTGC             <  6:231410/149‑1                                                                              GACGCTTCAAGGATTACATCGCGATCCCCAAGGCCAACGGCTACCAGTCGTTGCACACCACCCTGTTCGGCGATGCCGTTGTTGGCCATCTCTTCCATTTCGCGGGTGCGAATCTGGATTTCGATGGGCACGCCGTGCATGCCGAACAG  <  5:119014/149‑1                                                                                                                                                                                                                                    CCGCATCATCGTCGACAAGGTTGACACCTGTTACCGCGTGCTCGGCGCCGTACACAACCTGTACAAGCCGCTGCCCGGACGCTTCAAGGATTACATCGCGATCCCCAAGGCCAACGGCTACCAGTCGTTGCACACCACCCTGTTCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6049927‑6050074 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcGATGCCGTTGTTGGCCATCTCTTCCATTTCGCGGGTGCGAATCTGGATTTCGATGGGCACGCCGTGCATGCCGAACAG  <  NC_002947/6050143‑6050066

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.