New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6050074	38 (0.900)	3 (0.070)	3/250	NT	7.9%	coding (936/2109 nt)	spoT	bifunctional (p)ppGpp synthase/hydrolase
	?	NC_002947	= 6050143	33 (0.810)					coding (1005/2109 nt)	spoT	bifunctional (p)ppGpp synthase/hydrolase

CCCGGACGCTTCAAGGATTACATCGCGATCCCCAAGGCCAACGGCTACCAGTCGTTGCACACCACCCTGTTCGGCATGCACGGCGTGCCCATCGAAATCCAGATTCGCACCCGCGAAATGGAAGAGATGGCCAACAACGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAGGGTATCCTTGAACTGCAGCAACGTGCCGGCAACTCCCTGGAATTCATCGAGAGCGTGAAGATCG  >  NC_002947/6050000‑6050285                                                                                                                                                |                                                                                                                                               cccGGACGCTTCAAGGATTACATCGCGATCCCCAAGGCCAACGGCTACCAGTCGTTGCACACCACCCTGTTCGGCATGCACGGCGTGCCCATCGAAATCCAGATTCGCACCCGCGAAATGGAAGAGATGGCCAACAACGGCATcgccgc                                                                                                                                           <  3:388/149‑1 (MQ=255)     gACGCTTCAAGGATTACATCGCGATCCCCAAGGCCAACGGCTACCAGTCGTTGCACACCACCCTGTTCGGCATGCACGGCGTGCCCATCGAAATCCAGATTCGCACCCGCGAAATGGAAGAGATGGCCAACAACGGCATCGCCGCGCAc                                                                                                                                       <  6:113568/149‑1 (MQ=255)                     cATCGCGATCCCCAAGGCCAACGGCTACCAGTCGTTGCACACCACCCTGTTCGGCATGCACGGCGTGCCCATCGAAATCCAGATTCGCACCCGCGAAATGGAAGAGATGGCCAACAACGGCATCGCCGCGCACTGGCTGTACAAGTCa                                                                                                                        <  3:134996/148‑1 (MQ=255)                                ccAAGGCCAACGGCTACCAGTCGTTGCACACCACCCTGTTCGGCATGCACGGCGTGCCCATCGAAATCCAGATTCGCACCCGCGAAATGGAAGAGATGGCCAACAACGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGag                                                                                                            >  3:9168/1‑149 (MQ=255)                                             cTACCAGTCGTTGCACACCACCCTGTTCGGCATGCACGGCGTGCCCATCGAAATCCAGATTCGCACCCGCGAAATGGAAGAGATGGCCAACAACGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCa                                                                                               <  3:126485/149‑1 (MQ=255)                                                      gTTGCACACCACCCTGTTCGGCATGCACGGCGTGCCCATCGAAATCCAGATTCGCACCCGCGAAATGGAAGAGATGGCCAACAACGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCAcgcgc                                                                                      >  1:197254/1‑149 (MQ=255)                                                          cacaCCACCCTGTTCGGCATGCACGGCGTGCCCATCGAAATCCAGATTCGCACCCGCGAAATGGAAGAGATGGCCAACAACGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACgcgcgcgc                                                                                  >  2:168790/1‑149 (MQ=255)                                                            caccacCCTGTTCGGCATGCACGGCGTGCCCATCGAAATCCAGATTCGCACCCGCGAAATGGAAGAGATGGCCAACAACGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACGCGCGcgccc                                                                                <  2:149157/149‑1 (MQ=255)                                                               caccCTGTTCGGCATGCACGGCGTGCCCATCGAAATCCAGATTCGCACCCGCGAAATGGAAGAGATGGCCAACAACGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACGCGCGcgcccgc                                                                              >  7:13466/1‑148 (MQ=255)                                                               caccCTGTTCGGCATGCACGGCGTGCCCATCGAAATCCAGATTCGCACCCGCGAAATGGAAGAGATGGCCAACAACGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACGCGCGcgcccgc                                                                              >  5:150820/1‑148 (MQ=255)                                                                accCTGTTCGGCATGCACGGCGTGCCCATCGAAATCCAGATTCGCACCCGCGAAATGGAAGAGATGGCCAACAACGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACACGCGcgcccgc                                                                              >  4:41395/1‑147 (MQ=255)                                                                   cTGTTCGGCATGCACGGCGTGCCCATCGAAATCCAGATTCGCACCCGCGAAATGGAAGAGATGGCCAACAACGGCATCgccgaacagggtggtgtgcaacgactggtagccgttggccttggggatcgcgatgtaatccttgaagcgtc                                                                         <  5:119014‑M2/149‑72 (MQ=255)                                                                     gTTCGGCATGCACGGCGTGCCCATCGAAATCCAGATTCGCACCCGCGAAATGGAAGAGATGGCCAACAACGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACGCGCGCGCCCGCCAGTggg                                                                       >  6:79681/1‑149 (MQ=255)                                                                          gCATGCACGGCGTGCCCATCGAAATCCAGATTCGCACCCGCGAAATGGAAGAGATGGCCAACAACGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAg                                                                  <  5:79681/149‑1 (MQ=255)                                                                            aTGCACGGCGTGCCCATCGAAATCCAGATTCGCACCCGCGAAATGGAAGAGATGGCCAACAACGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAggg                                                                >  4:136591/1‑149 (MQ=255)                                                                              gCACGGCGTGCCCATCGAAATCCAGATTCGCACCCGCGAAATGGAAGAGATGGCCAACAACGGCATCgccgaacagggtggtgtgcaacgactggtagccgttggccttggggatcgcgatgtaatccttgaagcgtccgggcagcggc                                                              <  6:231410‑M2/149‑83 (MQ=255)                                                                                aCGGCGTGCCCATCGAAATCCAGATTCGCACCCGCGAAATGGAAGAGATGGCCAACAACGGCATCgccgaacagggtggtgtgcaacgactggtagccgttggccttggggatcgcgatgtaatccttgaagcgtccgggcagcggctt                                                            >  6:119014‑M2/1‑65 (MQ=255)                                                                                  ggCGTGCCCATCGAAATCCAGATTCGCACCCGCGAAATGGAAGAGATGGCCAACAACGGCATCGCCGCGCACTGGCTGTACAAGTCAAacgacgac                                                                                                               >  6:115503/1‑96 (MQ=255)                                                                                  ggCGTGCCCATCGAAATCCAGATTCGCACCCGCGAAATGGAAGAGATGGCCAACAACGGCATCGCCGCGCACTGGCTGTACAAGTCAAacgacgac                                                                                                               <  5:115503/96‑1 (MQ=255)                                                                                   gCGTGCCCATCGAAATCCAGATTCGCACCCGCGAAATGGAAGAGATGGCCAACAACGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACACGCGCGCCCGCCAGTGGGTCAAGGGTATCCtt                                                         <  3:41395/149‑1 (MQ=255)                                                                                         ccATCGAAATCCAGATTCGCACCCGCGAAATGGAAGAGATGGCCAACAACGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAGGGTATCCTTGAACTg                                                   >  2:11517/1‑149 (MQ=255)                                                                                           aTCGAAATCCAGATTCGCACCCGCGAAATGGAAGAGATGGCCAACAACGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAGGGTATCCTTGAACTgca                                                 <  2:197254/149‑1 (MQ=255)                                                                                           aTCGAAATCCAGATTCGCACCCGCGAAATGGAAGAGATGGCCAACAACGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAGGGTATCCTTGAACTg                                                   >  5:260850/1‑147 (MQ=255)                                                                                             cGAAATCCAGATTCGCACCCGCGAAATGGAAGAGATGGCCAACAACGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAGGGTATcc                                                           <  4:232446/137‑1 (MQ=255)                                                                                             cGAAATCCAGATTCGCACCCGCGAAATGGAAGAGATGGCCAACAACGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAGGGTATcc                                                           >  3:232446/1‑137 (MQ=255)                                                                                                  tCCACATTCCCACCCGCGAAATGGAAGAGAAGCCCAACAACGGCATCGCCGCGCACTGGCTGTACAAGTCAAACCCCGCCGACCAGCCCAAGGGCAGCCACGCGCGCCAGCGCCAGTGCGTCAAGGGTATCCTTCAACTgcagcctcgt                                          >  8:55090/1‑144 (MQ=255)                                                                                                     aGATTCGCACCCGCGAAATGGAAGAGATGGCCAACAACGGCATCGCCGCGCACTGGCTGTACAAGTCAAacgacgac                                                                                                               <  8:32695/77‑1 (MQ=255)                                                                                                     aGATTCGCACCCGCGAAATGGAAGAGATGGCCAACAACGGCATCGCCGCGCACTGGCTGTACAAGTCAAacgacgac                                                                                                               >  7:32695/1‑77 (MQ=255)                                                                                                             aCCCGCGAAATGGAAGAGATGGCCAACAACGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAGGGTATCCTTGAACTGCAGCAACGTGCCGGCAACTc                               >  6:111354/1‑149 (MQ=255)                                                                                                              cccGCGAAATGGAAGAGATGGCCAACAACGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAGGGTATCCTTGAACTGCAGCAACGTGCCGGCAACTcc                              <  5:111307/149‑1 (MQ=255)                                                                                                                    aaaTGGAAGAGATGGCCAACAACGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAGGGTATCCTTGAACTGCAGCAACGTGCCGGCAACTCCCTGGaa                        >  2:146182/1‑149 (MQ=255)                                                                                                                     aaTGGAAGAGATGGCCAACAACGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAGGGTATCCTTGAACTGCAGCAACGTGCCGGCAACTCCCTGGAAt                       <  5:111354/149‑1 (MQ=255)                                                                                                                            gagaTGGCCAACAACGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAGGGTATCCTTGAACTGCAGCAACGTGCCGGCAACTCCCTGGAATTCATCga                <  4:216513/149‑1 (MQ=255)                                                                                                                                    caacaaCGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAGGGTATCCTTGAACTGCAGCAACGTGCCGGCAACTCCCTGGAATTCATCGAGAGCGTg         >  6:13998/1‑148 (MQ=255)                                                                                                                                     aacaacGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAGGGTATCCTTGAACTGCAGCAACGTGCCGGCAACTCCCTGGAATTCATCGAGAGCGTGaa       <  8:13466/149‑1 (MQ=255)                                                                                                                                        aacGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAGGGTATCCTTGAACTGCAGCAACGTGCCGGCAACTCCCTGGAATTCATCGAGAGCGTg         >  6:225648/1‑144 (MQ=255)                                                                                                                                         acGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAGGGTATCCTTGAACTGCAGCAACGTGCCGGCAACTCCCTGGAATTCATCGAGAGCGTGAAGATc   <  6:150820/149‑1 (MQ=255)                                                                                                                                          cGGCATCGCCGCGCACTGGCGTTACAATTCAAACGACGACGAGCAGCCCAAGGGAAGCCACGCGCGCGCCCGCCATGGGGTCAAGGGTATCCTTGAACTGCAGAAACGTGCCGGCAACTCCCTGGAATTCATCGAGAGCGTGAAGATCg  <  1:11517/149‑1 (MQ=255)                                                                                                                                                |                                                                                                                                               CCCGGACGCTTCAAGGATTACATCGCGATCCCCAAGGCCAACGGCTACCAGTCGTTGCACACCACCCTGTTCGGCATGCACGGCGTGCCCATCGAAATCCAGATTCGCACCCGCGAAATGGAAGAGATGGCCAACAACGGCATCGCCGCGCACTGGCTGTACAAGTCAAACGACGACGAGCAGCCCAAGGGCAGCCACGCGCGCGCCCGCCAGTGGGTCAAGGGTATCCTTGAACTGCAGCAACGTGCCGGCAACTCCCTGGAATTCATCGAGAGCGTGAAGATCG  >  NC_002947/6050000‑6050285

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.