New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 460798	40 (0.950)	4 (0.100)	4/248	NT	9.4%	coding (1667/2301 nt)	pqqF	coenzyme PQQ synthesis protein F
	?	NC_002947	= 460842	39 (0.960)					coding (1623/2301 nt)	pqqF	coenzyme PQQ synthesis protein F

CAGAACAGCAGCAGGGCATGTTCGCTGCCTGGCACTTGGGCATGCTGCCAGCGGTGGTTTGCCCAGGTTGGCAGGGGGCTAGGTCGCGAGCCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAGGCAGGCACCGCTGGGGGCAGGCTACCCCGTACCGCGTCTGGCAGTTGCTTGAGCAGGGCCCTGATGGGGATCAGGGC  >  NC_002947/460651‑460946                                                                                                                                                    |                                                                                                                                                     cAGAACAGCAGCAGGGCATGTTCGCTGCCTGGCACTTGGGCATGCTGCCAGCGGTGGTTTGCCCAGGTTGGCAGGGGGCTAGGTCGCGAGCCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGaa                                                                                                                                                     <  7:193737/149‑1 (MQ=255)      cagcagcagGGCATGTTCGCTGCCTGGCACTTGGGCATGCTGCCAGCGGTGGTTTGCCCAGGTTGGCAGGGGGCTAGGTCGCGAGCCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTg                                                                                                                                                >  6:122081/1‑149 (MQ=255)              gggCATGTTCGCTGCCTGGCACTTGGGCATGCTGCCAGCGGTGGTTTGCCCAGGTTGGCAGGGGGCTAGGTCGCGAGCCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGgccatg                                                                                                                                        >  5:267943/1‑149 (MQ=255)                     ttCGCTGCCTGGCACTTGGGCATGCTGCCAGCGGTGGTTTGCCCAGGTTGGCAGGGGGCTAGGTCGCGAGCCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCcatgccatgc                                                                                                                                  >  2:10633/1‑148 (MQ=255)                      tCGCTGCCTGGCACTTGGGCATGCTGCCAGCGGTGGTTTGCCCAGGTTGGCAGGGGGCTAGGTCGCGAGCCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCAtgccatgcca                                                                                                                                >  4:119487/1‑149 (MQ=255)                         cTGCCTGGCACTTGGGCATGCTGCCAGCGGTGGTTTGCCCAGGTTGGCAGGGGGCTAGGTCGCGAGCCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTc                                                                                                                             >  7:25677/1‑149 (MQ=255)                            ccTGGCACTTGGGCATGCTGCCAGCGGTGGTTTGCCCAGGTTGGCAGGGGGCTAGGTCGCGAGCCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGgt                                                                                                                          <  3:46484/149‑1 (MQ=255)                              tGGCACTTGGGCATGCTGCCAGCGGTGGTTTGCCCAGGTTGGCAGGGGGCTAGGTCGCGAGCCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAcagcctgtggctgcacaccgagtggcatgg                                                                                                                        >  3:168068‑M1/1‑119 (MQ=255)                                        gCATGCTGCCAGCGGTGGTTTGCCCAGGTTGGCAGGGGGCTAGGTCGCGAGCCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAg                                                                                                              <  2:30844/149‑1 (MQ=255)                                             ctgcCAGCGGTGGTTTGCCCAGGTTGGCAGGGGGCTAGGTCGCGAGCCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTg                                                                                                          <  8:25677/148‑1 (MQ=255)                                             cTGCCAGCGGTGGTTTGCCCAGGTTGGCAGGGGGCTAGGTCGCGAGCCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGt                                                                                                         <  3:18761‑M2/149‑2 (MQ=255)                                                ccAGCGGTGGTTTGCCCAGGTTGGCAGGGGGCTAGGTCGCGAGCCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAgg                                                                                                             >  2:90430/1‑142 (MQ=255)                                                ccAGCGGTGGTTTGCCCAGGTTGGCAGGGGGCTAGGTCGCGAGCCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAgg                                                                                                             <  1:90430/142‑1 (MQ=255)                                                  aGCGGTGGTTTGCCCAGGTTGGCAGGGGGCTAGGTCGCGAGCCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGt                                                                                                    >  7:105472/1‑149 (MQ=255)                                                    cGGTGGTTTGCCCAGGTTGGCAGGGGGCTAGGTCGCGAGCCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTtg                                                                                                  >  5:92813/1‑149 (MQ=255)                                                       tggtTTGCCCAGGTTGGCAGGGGGCTAGGTCGCGAGCCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGgtg                                                                                                                         <  7:235768/123‑1 (MQ=255)                                                       tggtTTGCCCAGGTTGGCAGGGGGCTAGGTCGCGAGCCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGgtg                                                                                                                         >  8:235768/1‑123 (MQ=255)                                                         gtTTGCCCAGGTTGGCAGGGGGCTAGGTCGCGAGCCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAcagcctgtggctgcacaccgagtggcatggcatggccgcaggcttcgaggataccg                                                                                              <  4:168068‑M1/148‑57 (MQ=255)                                                         gtTTGCCCAGGTTGGCAGGGGGCTAGGTCGCGAGCCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGgccat                                                                                                                                         >  2:237322/1‑105 (MQ=255)                                                         gtTTGCCCAGGTTGGCAGGGGGCTAGGTCGCGAGCCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTgctgct                                                                                             <  8:5216/149‑1 (MQ=255)                                                            tGCCCAGGTTGGCAGGGGGCTAGGTCGCGAGCCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTggg                                                                                          <  1:188558/149‑1 (MQ=255)                                                               ccAGGTTGGCAGGGGGCTAGGTCGCGAGCCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGt                                                                                         >  6:248201/1‑147 (MQ=255)                                                                   gTTGGCAGGGGGCTAGGTCGCGAGCCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGt                                                                                   <  6:70313/149‑1 (MQ=255)                                                                      ggCAGGGGGCTAGGTCGCGAGCCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTgc                                                                                 <  4:18761/148‑1 (MQ=255)                                                                      ggCAGGGGGCTAGGTCGCGAGCCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTgc                                                                                 <  5:122081/148‑1 (MQ=255)                                                                              gCTAGGTCGCGAGCCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAggcaggca                                                                        >  4:218528/1‑149 (MQ=255)                                                                               cTAGGTCGCGAGCCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAGGCAGGCAc                                                                       <  6:92813/149‑1 (MQ=255)                                                                                   gTCGCGAGCCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAcagcctgtggctgcacaccgagtggcatggcatggccgcaggcttcgag                                                                                                     >  1:18499‑M1/1‑66 (MQ=255)                                                                                   gTCGCGAGCCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAcagcctgtggctgcacaccgagtggcatggcatggccgcaggcttcgag                                                                                                     <  2:18499‑M1/115‑50 (MQ=255)                                                                                        gAGCCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAGGCAGGCACCGCTggggg                                                              <  3:119487/149‑1 (MQ=255)                                                                                         aGCCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAGGCAGGCACCGCTGGGGGc                                                             <  3:218528/149‑1 (MQ=255)                                                                                           ccTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAGGCAGGCACCGCTGGGGGCAg                                                           <  5:61681/149‑1 (MQ=255)                                                                                            cTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAGGCAGGCACCGCTGGGGGCAgg                                                          <  6:267943/149‑1 (MQ=255)                                                                                                 ccAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAGGCAGGCACCGCTGGGGGCAGGCTAcc                                                     >  6:8830/1‑149 (MQ=255)                                                                                                  cAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAGGCAGGCACCGCTGGGGGCAGGCTAccc                                                    <  1:10633/149‑1 (MQ=255)                                                                                                   aGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAGGCAGGCACCGCTGGGGGCAgg                                                          <  6:6155/142‑1 (MQ=255)                                                                                                   aGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAGGCAGGCACCGCTGGGGGCAgg                                                          >  5:6155/1‑142 (MQ=255)                                                                                                     ggCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAGGCAGGCACCGCTggggg                                                              >  7:233338/1‑136 (MQ=255)                                                                                                     ggCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAGGCAGGCACCGCTggggg                                                              <  8:233338/136‑1 (MQ=255)                                                                                                     ggCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAGGCAGGCACCGCTGGGGGCAGGCTACCCCg                                                  >  4:19822/1‑148 (MQ=255)                                                                                                     ggCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAGGCAGGCACCGCTGGGGGCAGGCTACCCCGt                                                 <  5:248201/149‑1 (MQ=255)                                                                                                         cTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAGGCAGGCACCGCTGGGGGCAGGCTACCCCGTACcg                                             >  5:41953/1‑149 (MQ=255)                                                                                                               cagcgcagcgCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAGGCAGGCACCGCTGGGGGCAGGCTACCCCGTACCGCGTCTg                                       >  5:163688/1‑149 (MQ=255)                                                                                                                  cgcagcgcCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAGGCAGGCACCGCTGGGGGCAGGCTACCCCGTACCGCGTCTGGCa                                    <  6:163688/149‑1 (MQ=255)                                                                                                                     agcgcCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAGGCAGGCACCGCTGGGGGCAGGCTACCCGGTACCGCGTCTGGCAGtt                                 <  7:149231/149‑1 (MQ=255)                                                                                                                                 cTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAGGCAGGCACCGCTGGGGGCAGGCTACCCCGTACCGCGTCTGGCAGTTGCTTGAGCAggg                     >  5:177861/1‑149 (MQ=255)                                                                                                                                         cgGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGtcgaggataccgcgctaaaggccttgggcgctgcgctggaacagtgccctgggcaaggctcgcgacctagccccctgccaacctgggcaaac              <  4:168068‑M2/148‑93 (MQ=255)                                                                                                                                                cTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGtcgaggataccgcgctaaaggccttgggcgctgcgctggaacagtgccctgggcaaggctcgcgac                                        <  2:18499‑M2/115‑67 (MQ=255)                                                                                                                                                cTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGtcgaggataccgcgctaaaggccttgggcgctgcgctggaacagtgccctgggcaaggctcgcgac                                        >  1:18499‑M2/1‑49 (MQ=255)                                                                                                                                                cTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAGGCAGGCACCGCTGGGGGCAGGCTACCCCGTACCGCGTCTGGCAGTTGCTTGAGCAGGGCCCTGATGGGGAt        >  8:30650/1‑147 (MQ=255)                                                                                                                                                   gAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAGGCAGGCACCGCTGGGGGCAGGCTACCCCGTACCGCGTCTGGCAGTTGCTTGAGCAGGGCCCTGATGGGGATCAggg   <  7:30650/149‑1 (MQ=255)                                                                                                                                                    acagcctgtggctgcacaccgagtggcatggcatggccgcaggcttcgaggataccgcgctaaaggccttgggcgctgcgctggaacagtgccctgggcaaggctcgcgacctagccccctgccaacctgggcaaaccaccgctggcag  <  3:18761‑M1/149‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                     CAGAACAGCAGCAGGGCATGTTCGCTGCCTGGCACTTGGGCATGCTGCCAGCGGTGGTTTGCCCAGGTTGGCAGGGGGCTAGGTCGCGAGCCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAGGCAGGCACCGCTGGGGGCAGGCTACCCCGTACCGCGTCTGGCAGTTGCTTGAGCAGGGCCCTGATGGGGATCAGGGC  >  NC_002947/460651‑460946

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.