New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 460798	40 (0.950)	4 (0.100)	4/248	NT	9.4%	coding (1667/2301 nt)	pqqF	coenzyme PQQ synthesis protein F
	?	NC_002947	= 460842	39 (0.960)					coding (1623/2301 nt)	pqqF	coenzyme PQQ synthesis protein F

CTGCCAGCGGTGGTTTGCCCAGGTTGGCAGGGGGCTAGGTCGCGAGCCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAGGCAGGCACCGCTGGGGGCAGGCTACCCCGTACCGCGTCTGGCAGTTGCTTGAGCAGGGCCCTGATGGGGATCAGGGCCGGGGGCAGCGCCGTGCAGGGCAGCCAGCAACTGGCAGG  >  NC_002947/460695‑460985                                                                                                                                                    |                                                                                                                                                ctgcCAGCGGTGGTTTGCCCAGGTTGGCAGGGGGCTAGGTCGCGAGCCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTg                                                                                                                                                 <  8:25677/148‑1 (MQ=255) cTGCCAGCGGTGGTTTGCCCAGGTTGGCAGGGGGCTAGGTCGCGAGCCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGt                                                                                                                                                <  3:18761‑M2/149‑2 (MQ=255)      aGCGGTGGTTTGCCCAGGTTGGCAGGGGGCTAGGTCGCGAGCCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGt                                                                                                                                           >  7:105472/1‑149 (MQ=255)        cGGTGGTTTGCCCAGGTTGGCAGGGGGCTAGGTCGCGAGCCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTtg                                                                                                                                         >  5:92813/1‑149 (MQ=255)             gtTTGCCCAGGTTGGCAGGGGGCTAGGTCGCGAGCCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTgctgct                                                                                                                                    <  8:5216/149‑1 (MQ=255)                tGCCCAGGTTGGCAGGGGGCTAGGTCGCGAGCCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTggg                                                                                                                                 <  1:188558/149‑1 (MQ=255)                   ccAGGTTGGCAGGGGGCTAGGTCGCGAGCCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGt                                                                                                                                >  6:248201/1‑147 (MQ=255)                       gTTGGCAGGGGGCTAGGTCGCGAGCCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGt                                                                                                                          <  6:70313/149‑1 (MQ=255)                          ggCAGGGGGCTAGGTCGCGAGCCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTgc                                                                                                                        <  5:122081/148‑1 (MQ=255)                          ggCAGGGGGCTAGGTCGCGAGCCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTgc                                                                                                                        <  4:18761/148‑1 (MQ=255)                                  gCTAGGTCGCGAGCCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAggcaggca                                                                                                               >  4:218528/1‑149 (MQ=255)                                   cTAGGTCGCGAGCCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAGGCAGGCAc                                                                                                              <  6:92813/149‑1 (MQ=255)                                            gAGCCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAGGCAGGCACCGCTggggg                                                                                                     <  3:119487/149‑1 (MQ=255)                                             aGCCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAGGCAGGCACCGCTGGGGGc                                                                                                    <  3:218528/149‑1 (MQ=255)                                               ccTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAGGCAGGCACCGCTGGGGGCAg                                                                                                  <  5:61681/149‑1 (MQ=255)                                                cTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAGGCAGGCACCGCTGGGGGCAgg                                                                                                 <  6:267943/149‑1 (MQ=255)                                                     ccAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAGGCAGGCACCGCTGGGGGCAGGCTAcc                                                                                            >  6:8830/1‑149 (MQ=255)                                                      cAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAGGCAGGCACCGCTGGGGGCAGGCTAccc                                                                                           <  1:10633/149‑1 (MQ=255)                                                       aGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAGGCAGGCACCGCTGGGGGCAgg                                                                                                 <  6:6155/142‑1 (MQ=255)                                                       aGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAGGCAGGCACCGCTGGGGGCAgg                                                                                                 >  5:6155/1‑142 (MQ=255)                                                         ggCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAGGCAGGCACCGCTggggg                                                                                                     >  7:233338/1‑136 (MQ=255)                                                         ggCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAGGCAGGCACCGCTggggg                                                                                                     <  8:233338/136‑1 (MQ=255)                                                         ggCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAGGCAGGCACCGCTGGGGGCAGGCTACCCCg                                                                                         >  4:19822/1‑148 (MQ=255)                                                         ggCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAGGCAGGCACCGCTGGGGGCAGGCTACCCCGt                                                                                        <  5:248201/149‑1 (MQ=255)                                                             cTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAGGCAGGCACCGCTGGGGGCAGGCTACCCCGTACcg                                                                                    >  5:41953/1‑149 (MQ=255)                                                                   cagcgcagcgCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAGGCAGGCACCGCTGGGGGCAGGCTACCCCGTACCGCGTCTg                                                                              >  5:163688/1‑149 (MQ=255)                                                                      cgcagcgcCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAGGCAGGCACCGCTGGGGGCAGGCTACCCCGTACCGCGTCTGGCa                                                                           <  6:163688/149‑1 (MQ=255)                                                                         agcgcCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAGGCAGGCACCGCTGGGGGCAGGCTACCCGGTACCGCGTCTGGCAGtt                                                                        <  7:149231/149‑1 (MQ=255)                                                                                     cTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAGGCAGGCACCGCTGGGGGCAGGCTACCCCGTACCGCGTCTGGCAGTTGCTTGAGCAggg                                                            >  5:177861/1‑149 (MQ=255)                                                                                             cgGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGtcgaggataccgcgctaaaggccttgggcgctgcgctggaacagtgccctgggcaaggctcgcgacctagccccctgccaacctgggcaaac                                                     <  4:168068‑M2/148‑93 (MQ=255)                                                                                                    cTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGtcgaggataccgcgctaaaggccttgggcgctgcgctggaacagtgccctgggcaaggctcgcgac                                                                               >  1:18499‑M2/1‑49 (MQ=255)                                                                                                    cTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGtcgaggataccgcgctaaaggccttgggcgctgcgctggaacagtgccctgggcaaggctcgcgac                                                                               <  2:18499‑M2/115‑67 (MQ=255)                                                                                                    cTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAGGCAGGCACCGCTGGGGGCAGGCTACCCCGTACCGCGTCTGGCAGTTGCTTGAGCAGGGCCCTGATGGGGAt                                               >  8:30650/1‑147 (MQ=255)                                                                                                       gAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAGGCAGGCACCGCTGGGGGCAGGCTACCCCGTACCGCGTCTGGCAGTTGCTTGAGCAGGGCCCTGATGGGGATCAggg                                          <  7:30650/149‑1 (MQ=255)                                                                                                           ccTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAGGCAGGCACCGCTGGGGGCAGGCTACCCCGTACCGCGTCTGGCAGTTGCTTGAGCAGGGCCCTGATGGGGATCAGGGCCgg                                      >  3:155433/1‑149 (MQ=255)                                                                                                                  ccatgccatgCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAGGCAGGCACCGCTGGGGGCAGGCTACCCCGTACCGCGTCTGGCAGTTGCTTGAGCAGGGCCCTGATGGGGATCAGGGCCGGGGGCAgc                               >  4:215843/1‑149 (MQ=255)                                                                                                                   catgccatgcCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAGGCAGGCACCGCTGGGGGCAGGCTACCCCGTACCGCGTCTGGCAGTTGCTTGAGCAGGGCCCTGATGGGGATCAGGGCCGGGGGCAgcg                              >  1:72086/1‑149 (MQ=255)                                                                                                                   catgccatgcCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAGGCAGGCACCGCTGGGGGCAGGCTACCCCGTACCGCGTCTGGCAGTTGCTTGAGCAGGGCCCTGATGGGGATCAGGGCCGGGGGCAgcg                              >  7:147792/1‑149 (MQ=255)                                                                                                                    atgccatgccACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAGGCAGGCACCGCTGGGGGCAGGCTACCCCGTACCGCGTCTGGCAGTTGCTTGAGCAGGGCCCTGATGGGGATCAGGGCCGGGGGCAgcgc                             <  3:215843/149‑1 (MQ=255)                                                                                                                       ccatgccaCTCGGTGTGCAGCCACAGGCTGtcgaggataccgcgctaaaggccttgggcgctgcgctggaacagtgccctgggcaaggctcgcgacctagccccctgccaacctgggcaaaccaccgctggcagcatgcccaagtgcca                          >  3:168068‑M2/1‑30 (MQ=255)                                                                                                                       ccatgccaCTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAAGCAGGCACCGCTGGGGGCAGGCTACCCCGTACCGCGTCTGGCAGTTGCTTGAGCAGGGCCCTGATGGGGATCAGGGCCGGGGGCAGCGCCGt                          >  3:10542/1‑149 (MQ=255)                                                                                                                        catgccaCTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAGGCAGGCACCGCTGGGGGCAGGCTACCCCGTACCGCGTCTGGCAGTTGCTTGAGCAGGGCCCTGATGGGGATCAGGGCCGGGGGCAGCGCCGTg                         >  4:13904/1‑149 (MQ=255)                                                                                                                            ccaCTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCATGCAGGCACCGCTGGGGGCAGGCTACCCCGTACCGCGTCTGGCAGTTGCTTGAGCAGGGCCCTGATGGGGATCAGGGCCGGGGGCAGCGCCGTGCAgg                     <  4:10542/149‑1 (MQ=255)                                                                                                                             caCTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAGGCAGGCACCGCTGGGGGCAGGCTACCCCGTACCGCGTCTGGCAGTTGCTTGAGCAGGGCCCTGATGGGGATCAGGGCCGGGGGCAGCGCCGTGCAggg                    >  5:84982/1‑149 (MQ=255)                                                                                                                                  ggTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAGGCAGGCACCGCTGGGGGCAGGCTACCCCGTACCGCGTCTGGCAGTTGCTTGAGCAGGGCCCTGATGGGGATCAGGGCCGGGGGCAGCGCCGTGCAGGGcagc                <  6:41953/148‑1 (MQ=255)                                                                                                                                           ccACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAGGCAGGCACCGCTGGGGGCAGGCTACCCCGTACCGCGTCTGGCAGTTGCTTGAGCAGGGCCCTGATGGGGATCAGGGCCGGGGGCAGCGCCGTGCAGGGCAGCCAGCAACTgg      >  3:245107/1‑149 (MQ=255)                                                                                                                                               aGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAGGCAGGCACCGCTGGGGGCAGGCTACCCCGTACCGCGTCTGGCAGTTGCTTGAGCAGGGCCCTGATGGGGATCAGGGCCGGGGGCAGCGCCGTGCAGGGCAGCCAGCAACTGGCAgg  >  5:176271/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                CTGCCAGCGGTGGTTTGCCCAGGTTGGCAGGGGGCTAGGTCGCGAGCCTTGCCCAGGGCACTGTTCCAGCGCAGCGCCCAAGGCCTTTAGCGCGGTATCCTCGAAGCCTGCGGCCATGCCATGCCACTCGGTGTGCAGCCACAGGCTGTCGAGTTGCTGCTGGGTCAGCGTGCAGGCAGGCACCGCTGGGGGCAGGCTACCCCGTACCGCGTCTGGCAGTTGCTTGAGCAGGGCCCTGATGGGGATCAGGGCCGGGGGCAGCGCCGTGCAGGGCAGCCAGCAACTGGCAGG  >  NC_002947/460695‑460985

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.