New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	849846 =	42 (0.990)	4 (0.100)	4/244	NT	10.0%	coding (572/1836 nt)	pcs	phosphatidylcholine synthase
	?	NC_002947	849885 =	32 (0.800)					coding (533/1836 nt)	pcs	phosphatidylcholine synthase

CCTGGACACATTGAAGAAGCCCTGAAAAAGGCTGACGAAGACGATGAACTGATAGAGGCTGAGGCGTAACGCGGGATACTCATGCAAAAGCGAACCAAGGGCAGTCAATAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGAAAAAAGACTGACAGTAATGAGCAGGGCTAACCCAGGCGTCATGTTGGCTTTGAACAGTAGCAGACTGATGCCTGCCAGGCCGCCGGCAATGAATTGTGCG  >  NC_002947/849707‑849992                                                                                                                                            |                                                                                                                                                   ccTGGACACATTGAAGAAGCCCTGAAAAAGGCTGACGAAGACGATGAACTGATAGAGGCTGAGGCGTAACGCGGGATACTCATGCAAAAGCGAACCAAGGGCAGTCAATAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTttgttg                                                                                                                                           <  3:153392/149‑1 (MQ=255) aaatcgccagctcagtgcctctgacactcaccgcacaattcattgccggcggcctggcaggcatcagtctgctactgttcaaagccaacatgacgcctgggttagccctgctcattactgtcagtcttttttccatcgcGGCTttgttg                                                                                                                                           <  6:153388‑M1/10‑1 (MQ=255)  cTGGACACATTGAAGAAGCCCTGAAAAAGGCTGACGAAGACGATGAACTGATAGAGGCTGAGGCGTAACGCGGGATACTCATGCAAAAGCGAACCAAGGGCAGTCAATAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTgg                                                                                                                                          >  6:71394/1‑149 (MQ=255)     gACACATTGAAGAAGCCCTGAAAAAGGCTGACGAAGACGATGAACTGATAGAGGCTGAGGCGTAACGCGGGATACTCATGCAAAAGCGAACCAAGGGCAGTCAATAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGgcg                                                                                                                                        <  5:202556/148‑1 (MQ=255)       cacaTTGAAGAAGCCCTGAAAAAGGCTGACGAAGACGATGAACTGATAGAGGCTGAGGCGTAACGCGGGATACTCATGCAAAAGCGAACCAAGGGCAGTCAATAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAg                                                                                                                                     <  7:30605/149‑1 (MQ=255)        acaTTGAAGAAGCCCTGAAAAAGGCTGACGAAGACGATGAACTGATAGAGGCTGAGGCGTAACGCGGGATACTCATGCAAAAGCGAACCAAGGGCAGTCAATAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAgg                                                                                                                                    <  3:102199/149‑1 (MQ=255)              aagaagCCCTGAAAAAGGCTGACGAAGACGATGAACTGATAGAGGCTGAGGCGTAACGCGGGATACTCATGCAAAAGCGAACCAAGGGCAGTCAATAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGgtagta                                                                                                                               <  1:3045/148‑1 (MQ=255)              aagaagCCCTGAAAAAGGCTGACGAAGACGATGAACTGATAGAGGCTGAGGCGTAACGCGGGATACTCATGCAAAAGCGAACCAAGGGCAGTCAATAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGgtagta                                                                                                                               <  7:20025/148‑1 (MQ=255)                  agCCCTGAAAAAGGCTGACGAAGACGATGAACTGATAGAGGCTGAGGCGTAACGCGGGATACTCATGCAAAAGCGAACCAAGGGCAGTCAATAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGGTAGTAGATAg                                                                                                                          <  8:181121/149‑1 (MQ=255)                          actcaccgcacaattcatttccgtcggcctggcaggcatcagtctgctactgttcaaagccaacatgacgcctgggttagccctgctcattactgtcagtcttttttccatcgcGGCTTTG‑‑‑GCGCAGGTAGTAGATAGGCCGCCAAAGc                                                                                                               >  4:150040‑M1/115‑149 (MQ=255)                          aaaaGGCTGACGAAGACGATGAACTGATAGAGGCTGAGGCGTAACGCGGGATACTCAAGCAAAAGCGAACCAAGGGCAGTCAATAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCa                                                                                                                   >  1:259945/1‑148 (MQ=255)                                    caattcattgccggcggcctggcaggcatcagtctgctactgttcaaagccaacatgacgcctgggttagccctgctcattactgtcagtcttttttccatcgcGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATg                                                                                                        >  5:153388‑M1/105‑149 (MQ=255)                                        gACGATGAACTGATAGAGGCTGAGGCGTAACGCGGGATACTCATGCAAAAGCGAACCAAGGGCAGTCAATAGTCTTGGTGCGACCTACACGGTGATCGGGGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGaa                                                                                                     >  1:65836/1‑148 (MQ=255)                                         aCGATGAACTGAAAGAGGCTGAGGCGTAACGCGGGAAACTCATGCAATAGCGAACCAAGGGCAGTCAATAGTCTTGGTTCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGaaaa                                                                                                   <  7:179486/149‑1 (MQ=255)                                           gATGAACTGATAGAGGCTGAGGCGTAACGCGGGATACTCATGCAAAAGCGAACCAAGGGCAGTCAATAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGaaaaaa                                                                                                 <  2:204857/149‑1 (MQ=255)                                           gATGAACTGATAGAGGCTGAGGCGTAACGCGGGATACTCATGCAAAAGCGAACCAAGGGCAGTCAATAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGaaaa                                                                                                   >  1:240215/1‑147 (MQ=255)                                               aaCTGATAGAGGCTGAGGCGTAACGCGGGATACTCATGCAAAAGCGAACCAAGGGCAGTCAATAGTCTTGGTGCGACCTACACGGTGATCGGGGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGAAAAAAGAc                                                                                              <  2:65836/148‑1 (MQ=255)                                                 cTGATACAGGCGTAGTCGTAACGCGGGATACTCATGCAAAAGCGAACCAAGGGCAGTCAATAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGAAAAAAGACTGa                                                                                           <  8:217056/149‑1 (MQ=255)                                                   gATAGAGGCTGAGGCGTAACGCGGGATACTCATGCAAAAGCGAACCAAGGGCAGTCAATAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGAAAAAAGACTGa                                                                                           >  7:126033/1‑147 (MQ=255)                                                    aTAGAGGCTGAGGCGTAACGCGGGATACTCATGCAAAAGCGAACCAAGGGCAGTCAATAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGgtagta                                                                                                                               <  1:234255/110‑1 (MQ=255)                                                    aTAGAGGCTGAGGCGTAACGCGGGATACTCATGCAAAAGCGAACCAAGGGCAGTCAATAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGgtagta                                                                                                                               >  2:234255/1‑110 (MQ=255)                                                    aTAGAGGCTGAGGCGTAACGCGGGATACTCATGCAAAAGCGAACCAAGGGCAGTCAATAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGAAAAAAGACTGACAg                                                                                        >  3:134065/1‑149 (MQ=255)                                                        agGCTGAGGCGTAACGCGGGATACTCATGCAAAAGCGAACCAAGGGCAGTCAATAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGgtagta                                                                                                                               >  2:50432/1‑106 (MQ=255)                                                        agGCTGAGGCGTAACGCGGGATACTCATGCAAAAGCGAACCAAGGGCAGTCAATAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGgtagta                                                                                                                               <  1:50432/106‑1 (MQ=255)                                                           cTGAGGCGTAACGCGGGATACTCATGCAAAAGCGAACCAAGGGCAGTCAATAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGgtagt                                                                                                                                <  8:231360/102‑1 (MQ=255)                                                           cTGAGGCGTAACGCGGGATACTCATGCAAAAGCGAACCAAGGGCAGTCAATAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGgtagt                                                                                                                                >  7:231360/1‑102 (MQ=255)                                                               ggCGTAACGCGGGATACTCATGCAAAAGCGAACCAAGGGCAGTCAATAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGAAAAAAGACTGACAGTAATGAGCAg                                                                              <  6:182468/148‑1 (MQ=255)                                                                       gctactgttcaaagccaacatgacgcctgggttagccctgctcattactgtcagtcttttttccatcgcGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGcc                                                                                                              <  4:88157‑M1/39‑1 (MQ=255)                                                                       gctactgttcaaagccaacatgacgcctgggttagccctgctcattactgtcagtcttttttccatcgcGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGcc                                                                                                              >  3:88157‑M1/70‑108 (MQ=255)                                                                         gggATACTCATGCAAAAGCGAACCAAGGGCAGTCAATAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGAAAAAAGACTGACAGTAATGAGTAGGGCTAACCCAg                                                                   <  2:240215/149‑1 (MQ=255)                                                                                tCATGCAAAAGCGAACCAAGGGCAGTCAATAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGAAAAAAGACTGACAGTAATGAGCAGGGCTAACCCAGGCGTCAt                                                            >  5:135590/1‑149 (MQ=255)                                                                                  aTGCAAAAGCGAACCAAGGGCAGTCAATAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATTGAAAAAAGACTGACAGTAATGAGCAGGGCTAACCCAGGCGTCATGt                                                          >  7:209757/1‑149 (MQ=255)                                                                                   tGCAAAAGCGAACCAAGGGCAGTCAATAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGAAAAAAGACTGACAGTAATGAGCAGGGCTAACCCAGGCGTCATGtt                                                         <  5:71394/149‑1 (MQ=255)                                                                                        aaGCGAACCAAGGGCAGTCAATAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGAAAAAAGACTGACAGTAATGAGCAGGGCTAACCCAGGCGTCATGTTGGCtt                                                    <  4:134065/149‑1 (MQ=255)                                                                                         aGCGAACCAAGGGCAGTCAATAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGGTAGTAGAt                                                                                                                            >  7:133727/1‑76 (MQ=255)                                                                                         aGCGAACCAAGGGCAGTCAATAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGGTAGTAGAt                                                                                                                            <  8:133727/76‑1 (MQ=255)                                                                                         aGCGAACCAAGGGCAGTCAATAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGAAAATAGACTGACAGTAATGAGCAGGGCTAACCCAGGCGTCATGTTGGCttt                                                   <  2:259945/149‑1 (MQ=255)                                                                                         aGCGAACCAAGGGCAGTCAATAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGAAAAAAGACTGACAGTAATGAGCAGGGCTAACCCAGGCGTCATGTTGGCttt                                                   <  5:250294/149‑1 (MQ=255)                                                                                         aGCGAACCAAGGGCAGTCAATAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGAAAAAAGACTGACAGTAATGAGCAGGGCTAACCCAGGCGTCATGTTGGCttt                                                   <  8:209757/149‑1 (MQ=255)                                                                                                  aGGGCAGTCAATAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGAAAAAAGACTGACAGTAATGAGCAGGGCTAACCCAGGCGTCATGTTGGCTTTGAACAGTAg                                          <  4:185486/149‑1 (MQ=255)                                                                                                        gTCAATAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGAAAAAAGACTGACAGTAATGAGCAGGGCTAACCCAGGCGTCATGTTGGCTTTGAACAGTAGCAGACt                                    <  8:126033/149‑1 (MQ=255)                                                                                                         tCAATAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGAAAAAAGACTGACAGTAATGAGCAGGGCTAACCCAGGCGTCATGTTGGCTTTGAACAGTAGCAGACt                                    >  6:79143/1‑148 (MQ=255)                                                                                                           aaTAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGAAAAAAGACTGACAGTAATGAGCAGGGCTAACCCAGGCGTCATGTTGGCTTTGAACAGTAGCAGACTGAt                                 <  1:255112/149‑1 (MQ=255)                                                                                                               gTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGAAAAAAGACTGACAGTAATGAGCAGGGCTAACCCAGGCGTCATGTTGGCTTTGAACAGTAGCAGACTGAtgcct                             <  5:79143/149‑1 (MQ=255)                                                                                                                     gTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGAAAAAAGACTGACAGTAATGAGCAGGGCTAACCCAGGCGTCATGTTGGCTTTGAACAGTAGCAGACTGATGCCTGCCAgg                       >  7:50160/1‑149 (MQ=255)                                                                                                                              gCACGGTGATCGGAGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGAAAAAAGACTGACAGTAATGAGCAGGGCTAACCCAGGCGTCATGTTGGCTTTGAACAGTAGCAGACTGATGCCTGCCATGCCGCCGGc               >  8:244897/1‑148 (MQ=255)                                                                                                                                  ggTGATCGGAGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGAAAAAAGACTGACAGTAATGAGCAGGGCTAACCCAGGCGTCATGTTGGCTTTGAACAGTAGCAGACTGATGCCTGCCAGGCCGCCGGCAATg           >  8:198789/1‑148 (MQ=255)                                                                                                                                          gAGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGAAAAAAGACTGACAGTAATGAGCAGGGCTAACCCAGGCGTCATGTTGGCTTTGAACAGTAGCAGACTGATGCCTGCCAGGCCGCCGGCAATGAATTGTGCg  >  4:198792/1‑149 (MQ=255)                                                                                                                                            |                                                                                                                                                   CCTGGACACATTGAAGAAGCCCTGAAAAAGGCTGACGAAGACGATGAACTGATAGAGGCTGAGGCGTAACGCGGGATACTCATGCAAAAGCGAACCAAGGGCAGTCAATAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGAAAAAAGACTGACAGTAATGAGCAGGGCTAACCCAGGCGTCATGTTGGCTTTGAACAGTAGCAGACTGATGCCTGCCAGGCCGCCGGCAATGAATTGTGCG  >  NC_002947/849707‑849992

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.