New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	849846 =	42 (0.990)	4 (0.100)	4/244	NT	10.0%	coding (572/1836 nt)	pcs	phosphatidylcholine synthase
	?	NC_002947	849885 =	32 (0.800)					coding (533/1836 nt)	pcs	phosphatidylcholine synthase

CGAAGACGATGAACTGATAGAGGCTGAGGCGTAACGCGGGATACTCATGCAAAAGCGAACCAAGGGCAGTCAATAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGAAAAAAGACTGACAGTAATGAGCAGGGCTAACCCAGGCGTCATGTTGGCTTTGAACAGTAGCAGACTGATGCCTGCCAGGCCGCCGGCAATGAATTGTGCGGTGAGTGTCAGAGGCACTGAGCTGGCGATTTGC  >  NC_002947/849742‑850025                                                                                                                                                |                                                                                                                                             caattcattgccggcggcctggcaggcatcagtctgctactgttcaaagccaacatgacgcctgggttagccctgctcattactgtcagtcttttttccatcgcGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATg                                                                                                                                         >  5:153388‑M1/105‑149 (MQ=255)     gACGATGAACTGATAGAGGCTGAGGCGTAACGCGGGATACTCATGCAAAAGCGAACCAAGGGCAGTCAATAGTCTTGGTGCGACCTACACGGTGATCGGGGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGaa                                                                                                                                      >  1:65836/1‑148 (MQ=255)      aCGATGAACTGAAAGAGGCTGAGGCGTAACGCGGGAAACTCATGCAATAGCGAACCAAGGGCAGTCAATAGTCTTGGTTCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGaaaa                                                                                                                                    <  7:179486/149‑1 (MQ=255)        gATGAACTGATAGAGGCTGAGGCGTAACGCGGGATACTCATGCAAAAGCGAACCAAGGGCAGTCAATAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGaaaaaa                                                                                                                                  <  2:204857/149‑1 (MQ=255)        gATGAACTGATAGAGGCTGAGGCGTAACGCGGGATACTCATGCAAAAGCGAACCAAGGGCAGTCAATAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGaaaa                                                                                                                                    >  1:240215/1‑147 (MQ=255)            aaCTGATAGAGGCTGAGGCGTAACGCGGGATACTCATGCAAAAGCGAACCAAGGGCAGTCAATAGTCTTGGTGCGACCTACACGGTGATCGGGGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGAAAAAAGAc                                                                                                                               <  2:65836/148‑1 (MQ=255)              cTGATACAGGCGTAGTCGTAACGCGGGATACTCATGCAAAAGCGAACCAAGGGCAGTCAATAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGAAAAAAGACTGa                                                                                                                            <  8:217056/149‑1 (MQ=255)                gATAGAGGCTGAGGCGTAACGCGGGATACTCATGCAAAAGCGAACCAAGGGCAGTCAATAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGAAAAAAGACTGa                                                                                                                            >  7:126033/1‑147 (MQ=255)                 aTAGAGGCTGAGGCGTAACGCGGGATACTCATGCAAAAGCGAACCAAGGGCAGTCAATAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGAAAAAAGACTGACAg                                                                                                                         >  3:134065/1‑149 (MQ=255)                            ggCGTAACGCGGGATACTCATGCAAAAGCGAACCAAGGGCAGTCAATAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGAAAAAAGACTGACAGTAATGAGCAg                                                                                                               <  6:182468/148‑1 (MQ=255)                                      gggATACTCATGCAAAAGCGAACCAAGGGCAGTCAATAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGAAAAAAGACTGACAGTAATGAGTAGGGCTAACCCAg                                                                                                    <  2:240215/149‑1 (MQ=255)                                             tCATGCAAAAGCGAACCAAGGGCAGTCAATAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGAAAAAAGACTGACAGTAATGAGCAGGGCTAACCCAGGCGTCAt                                                                                             >  5:135590/1‑149 (MQ=255)                                               aTGCAAAAGCGAACCAAGGGCAGTCAATAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATTGAAAAAAGACTGACAGTAATGAGCAGGGCTAACCCAGGCGTCATGt                                                                                           >  7:209757/1‑149 (MQ=255)                                                tGCAAAAGCGAACCAAGGGCAGTCAATAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGAAAAAAGACTGACAGTAATGAGCAGGGCTAACCCAGGCGTCATGtt                                                                                          <  5:71394/149‑1 (MQ=255)                                                     aaGCGAACCAAGGGCAGTCAATAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGAAAAAAGACTGACAGTAATGAGCAGGGCTAACCCAGGCGTCATGTTGGCtt                                                                                     <  4:134065/149‑1 (MQ=255)                                                      aGCGAACCAAGGGCAGTCAATAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGAAAATAGACTGACAGTAATGAGCAGGGCTAACCCAGGCGTCATGTTGGCttt                                                                                    <  2:259945/149‑1 (MQ=255)                                                      aGCGAACCAAGGGCAGTCAATAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGAAAAAAGACTGACAGTAATGAGCAGGGCTAACCCAGGCGTCATGTTGGCttt                                                                                    <  8:209757/149‑1 (MQ=255)                                                      aGCGAACCAAGGGCAGTCAATAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGAAAAAAGACTGACAGTAATGAGCAGGGCTAACCCAGGCGTCATGTTGGCttt                                                                                    <  5:250294/149‑1 (MQ=255)                                                               aGGGCAGTCAATAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGAAAAAAGACTGACAGTAATGAGCAGGGCTAACCCAGGCGTCATGTTGGCTTTGAACAGTAg                                                                           <  4:185486/149‑1 (MQ=255)                                                                     gTCAATAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGAAAAAAGACTGACAGTAATGAGCAGGGCTAACCCAGGCGTCATGTTGGCTTTGAACAGTAGCAGACt                                                                     <  8:126033/149‑1 (MQ=255)                                                                      tCAATAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGAAAAAAGACTGACAGTAATGAGCAGGGCTAACCCAGGCGTCATGTTGGCTTTGAACAGTAGCAGACt                                                                     >  6:79143/1‑148 (MQ=255)                                                                        aaTAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGAAAAAAGACTGACAGTAATGAGCAGGGCTAACCCAGGCGTCATGTTGGCTTTGAACAGTAGCAGACTGAt                                                                  <  1:255112/149‑1 (MQ=255)                                                                            gTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGAAAAAAGACTGACAGTAATGAGCAGGGCTAACCCAGGCGTCATGTTGGCTTTGAACAGTAGCAGACTGAtgcct                                                              <  5:79143/149‑1 (MQ=255)                                                                                  gTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGAAAAAAGACTGACAGTAATGAGCAGGGCTAACCCAGGCGTCATGTTGGCTTTGAACAGTAGCAGACTGATGCCTGCCAgg                                                        >  7:50160/1‑149 (MQ=255)                                                                                           gCACGGTGATCGGAGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGAAAAAAGACTGACAGTAATGAGCAGGGCTAACCCAGGCGTCATGTTGGCTTTGAACAGTAGCAGACTGATGCCTGCCATGCCGCCGGc                                                >  8:244897/1‑148 (MQ=255)                                                                                               ggTGATCGGAGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGAAAAAAGACTGACAGTAATGAGCAGGGCTAACCCAGGCGTCATGTTGGCTTTGAACAGTAGCAGACTGATGCCTGCCAGGCCGCCGGCAATg                                            >  8:198789/1‑148 (MQ=255)                                                                                                   catcgcggctttggcggcctatctactacctgcgccaacaaagccGCGATGGAAAAAAGACTGACAGTAATGAGCAGGGCTAACCCAGGCGTCATGTTGGCTTTGAACAGTAGCAGACTGATGCCTGCCAGGCCGCCGGCAATGAATtg                                       >  5:153388‑M2/46‑149 (MQ=255)                                                                                                       gAGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGAAAAAAGACTGACAGTAATGAGCAGGGCTAACCCAGGCGTCATGTTGGCTTTGAACAGTAGCAGACTGATGCCTGCCAGGCCGCCGGCAATGAATTGTGCg                                   >  4:198792/1‑149 (MQ=255)                                                                                                         ggctttggcggcctatctactacctgcgccaacaaagccGCGATGGAAAAAAGACTGACAGTAATGAGCAGGGCTAACCCAGGCGTCATGTTGGCTTTGAACAGTAGc                                                                          <  4:88157‑M2/69‑1 (MQ=255)                                                                                                         ggctttggcggcctatctactacctgcgccaacaaagccGCGATGGAAAAAAGACTGACAGTAATGAGCAGGGCTAACCCAGGCGTCATGTTGGCTTTGAACAGTAGc                                                                          >  3:88157‑M2/40‑108 (MQ=255)                                                                                                            TTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGAAAAAAGACTGACAGTAATGAGCAGGGCTAACCCAGGCGTCATGTTGGCTTTGAACAGTAGCAGACTGATGCCTGCCAGGCCGCCGGCAATGAATTGTGCGGTGAg                              <  1:68415‑M1/149‑1 (MQ=255)                                                                                                             gctttggcggcctatctactacctgcgccaaagccGCGATGGAAAAAAGACTGACAGTAATGAGCAGGGCTAACCCAGGCGTCATGTTGGCTTTGAACAGTAGCAGACTGATGCCTGCCAGGCCGACGGAAATGAATTGTGCGGTGAgt                             >  4:150040‑M2/36‑149 (MQ=255)                                                                                                                ttgGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGAAAAAAGACTGACAGTAATGAGCAGGGCTAACCCAGGCGTCATGTTGGCTTTGAACAGTAGCAGACTGATGCCTGCCAGGCCGCCGGCAATGAATTGTGCGGTGAgtgt                           <  6:135590/148‑1 (MQ=255)                                                                                                                  ggCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGAAAAAAGACTGACAGTAATGAGCAGGGCTAACCCAGGCGTCATGTTGGCTTTGAACAGTAGCAGACTGATGCCTGCCAGGCCGCCGGCAATGAATTGTGCGGTGAgtgt                           >  2:72449/1‑146 (MQ=255)                                                                                                                         gtagtaGATAGGCCGCCAAAGCCGCGATGGAAAAAAGACTGACAGTAATGAGCAGGGCTAACCCAGGCGTCATGTTGGCTTTGAACAGTAGCAGACTGATGCCTGCCAGGCCGCCGGCAAGGAATTGTGCGGTGAGTGTCAGAGGCACt                 >  2:190559/1‑149 (MQ=255)                                                                                                                          tagtagATAGGCCGCCAAAGCCGCGATGGAAAAAAGACTGACAGTAATGAGCAGGGCTAACCCAGGCGTCATGTTGGCTTTGAACAGTAGCAGACTGATGCCTGCCAGGCCGCCGGCAATGAATTGTGCGGTGAGTGTCa                         >  1:186338/1‑140 (MQ=255)                                                                                                                          tagtagATAGGCCGCCAAAGCCGCGATGGAAAAAAGACTGACAGTAATGAGCAGGGCTAACCCAGGCGTCATGTTGGCTTTGAACAGTAGCAGACTGATGCCTGCCAGGCCGCCGGCAATGAATTGTGCGGTGAGTGTCa                         <  2:186338/140‑1 (MQ=255)                                                                                                                                 tAGGCCGCCAAAGCCGCGATGGAAAAAAGACTGACAGTAATGAGCAGGGCTAACCCAGGCGTCATGTTGGCTTTGAACAGTAGCAGACTGATGCCTGCCAGGCCGCCGGCAATGAATTGTGCGGTGAGTGTCAGAGGCACTGAGCTgg          <  7:198789/148‑1 (MQ=255)                                                                                                                                    gccgccAAAGCCGCGATGGAAAAAAGACTGACAGTAATGAGCAGGGCTAACCCAGGCGTCATGTTGGCTTTGAACAGTAGCAGACTGATGCCTGCCAGGCCGCCGGCAATGAATTGTGCGGTGAGTGTCAGAGGCACTGAGCTGGCGAt      <  7:244897/149‑1 (MQ=255)                                                                                                                                    gccgccAAAGCCGCGATGGAAAAAAGACTGACAGTAATGAGCAGGGCTAACCCAGGCGTCATGTTGGCTTTGAACAGTAGCAGACTGATGCCTGCCAGGCCGCCGGCAATGAATTGTGCGGTGAGTGTCAGAGGCACTGAGCTGGCGAt      >  8:215703/1‑149 (MQ=255)                                                                                                                                      caacaaagccGCGATGGAAAAAAGACTGACAGTAATGAGCAGGGCTAACCCAGGCGTCATGTTGGCTTTGAACAGTAGCAGACTGATGCCTGCCAGGCCGCCGGCAATGAATTGTGCGGTGAGTGTCAGAGGCACTGAGCTGGCGAttt    <  6:153388‑M2/139‑1 (MQ=255)                                                                                                                                        ccAAAGCCGCGATGGAAAAAAGACTGACAGTAATGAGCAGGGCTAACCCAGGCGTCATGTTGGCTTTGAACAGTAGCAGACTGATGCCTGCCAGGCCGCCGGCAATGAATTGTGCGGTGAGTGTCAGAGGCACTGAGCTGGCGATTTgc  <  7:215703/149‑1 (MQ=255)                                                                                                                                                |                                                                                                                                             CGAAGACGATGAACTGATAGAGGCTGAGGCGTAACGCGGGATACTCATGCAAAAGCGAACCAAGGGCAGTCAATAGTCTTGGTGCGACCTGCACGGTGATCGGAGGCTTTGTTGGCGCAGGTAGTAGATAGGCCGCCAAAGCCGCGATGGAAAAAAGACTGACAGTAATGAGCAGGGCTAACCCAGGCGTCATGTTGGCTTTGAACAGTAGCAGACTGATGCCTGCCAGGCCGCCGGCAATGAATTGTGCGGTGAGTGTCAGAGGCACTGAGCTGGCGATTTGC  >  NC_002947/849742‑850025

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.