New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1018034 =	41 (0.970)	3 (0.080)	3/240	NT	6.4%	intergenic (‑173/+58)	PP_5461/dppF	hypothetical protein/dipeptide ABC transporter ATP‑binding protein
	?	NC_002947	1018081 =	50 (1.270)					intergenic (‑220/+11)	PP_5461/dppF	hypothetical protein/dipeptide ABC transporter ATP‑binding protein

GCGCCGTACCTACAATAAACCTTTCAAAGCCCAGAGTGCGACGAGCCCGGCGCCTCCATCGCAAACATCGCCTTGGGCCACAGCCTCAATGGCAACCTCGTCCACAAATGGATTCAGCTCCACAATCAAAAAGCCTTGGCACTTCAGCTGGGCAGCGCAGCAAACTGCTGTTTTTCGCACTGAGGGCTGCCCAGTTTTCTAACAGTTAAAGAAACTGCTCCGCATAGTGGCACGCAACCTGCCGCGTACTCACCTGCCTCAGTGCCGGCACCTCCTTGGCACACCGCTCGGTCGCA  >  NC_002947/1017887‑1018182                                                                                                                                                    |                                                                                                                                                     gctgaacccgccggatgggtgtgcgtttcacaaacgctgcccgtatgcgaccgagcggtgtgccaaggaggtgccggcactgaggcaggtgagtacgcggcaggttgcgtgccactatgcggagcagtttctttaactgttagaaaaCt                                                                                                                                                     >  5:271556‑M1/148‑149 (MQ=255)   tgaacccgccggatgggtgtgcgtttcacaaacgctgcccgtatgcgaccgagcggtgtgccaaggaggtgccggcactgaggcaggtgagtacgcggcaggttgcgtgccactatgcggagcagtttctttaactgttagaaaaCTgg                                                                                                                                                   <  2:239012‑M1/4‑1 (MQ=255)   gcCGTACCTACAATAAACCTTTCAAAGCCCAGAGTGCGACGAGCCCGGCGCCTCCATCGCAAACATCGCCTTGGGCCACAGCCTCAATGGCAAACTCGTCCACAAATGGATTCAGCTCCACAATCAAAAAGCCTTGGCACTTCAGCTgg                                                                                                                                                   >  2:95241/1‑149 (MQ=255)      gTACCAACAATAAACCTTTCAAAGACCATAGTGCGACGAGGCCGGCGCCTACATCGCAAACATCGGCTTGGGCCACAGCCTCAATGGCAACCTCGTCCACAAATGGATTCAGCTCCACAATGAAAAAGCCTTGGCACTTCAGCTGGgca                                                                                                                                                <  8:108618/149‑1 (MQ=255)                           aaGCCCAGAGTGCGACGAGCCCGGCGCCTCCATCGCAAACATCGCCTTGGGCCACAGCCTCAATGGCAACCTCGTCCACAAATGGATTCAGCTCCACAATCAAAAAGCCTTGGCACTTCAGCTGGGCAGCGCAGCAAACTGCTGttttt                                                                                                                           <  7:122460/149‑1 (MQ=255)                           aaGCCCAGAGTGCGACGAGCCCGGCGCCTCCATCGCAAACATCGCCTTGGGCCACAGCCTCAATGGCAACCTCGTCCACAAATGGATTCAGCTCCACAATCAAAAAGCCTTGGCACTTCAGCTGGGCAGCGCAGCAAACTGCTGttttt                                                                                                                           >  8:122460/1‑149 (MQ=255)                                    gTGCGACGAGCCCGGCGCCTCCATCGCAAACATCGCCTTGGGCCACAGCCTCAATGGCAACCTCGTCCACAAATGGATTCAGCTCCACAATCAAAAAGCCTTGGCACTTCAGCTGGGCAGCGCAGCAAACTGCTGTTTTTCGCACTGAg                                                                                                                  >  1:31875/1‑149 (MQ=255)                                     tGCGACGAGCCCGGCGCCTCCATCGCAAACATCGCCTTGGGCCACAGCCTCAATGGCAACCTCGTCCACAAATGGATTCAGCTCCACAATCAAAAAGCCTTGGCACTTCAGCTGGGCAGCGCAGCAAACTGCTGTTTTTCGCACTGAgg                                                                                                                 >  3:192644/1‑149 (MQ=255)                                           gaGCCCGGCGCCTCCATCGCAAACATCGACTTGGGCCACAGCCTCAATGGCAACCTCGTCCACAAATGGATTCAGCTCCACAATCAAAAAGCCTTGGCACTTCAGCTGGGCAGCGCAGCAAACTGCTGTTTTTCGCACTGAGGGCTGcc                                                                                                           <  6:89070/149‑1 (MQ=255)                                              tgcgaccgagcggtgtgccaaggaggtgccggcactgaggcaggtgagtacgcggcaggttgcgtgccactatgcggagcagtttctttaactgttagaaaaCTgg                                                                                                                                                   <  6:268825‑M1/4‑1 (MQ=255)                                              tgcgaccgagcggtgtgccaaggaggtgccggcactgaggcaggtgagtacgcggcaggttgcgtgccactatgcggagcagtttctttaactgttagaaaaCTgg                                                                                                                                                   >  5:268825‑M1/103‑106 (MQ=255)                                              cccGGCGCCTCCATCGCAAACATCGCCTTGGGCCACAGCCTCAATGGCAACCTCGTCCACAAATGGATTCAGCTCCACAATCAAAAAGCCTTGGCACTTCAGCTGGGCAGCGCAGCAAACTGCTGTTTTTCGCACTGAGGGCTGCCCAg                                                                                                        >  3:145000/1‑149 (MQ=255)                                               gcgaccgagcggtgtgccaaggaggtgccggcactgaggcaggtgagtacgcggcaggttgcgtgccactatgcggagcagtttctttaactgttagaaaaCTGGGCAGCGCAGCAAACTGCTGTTTTTCGCACTGAGGGCTGCCCAg                                                                                                        >  4:134131‑M1/102‑148 (MQ=255)                                                cGGCGCCTCCATCGCAAACATCTCCTTGGACCACAGCCTCAAAGGCAACCTCGTACACAAATGGATTCAGCTCCACAATAAAAAAGCCTTGTAAAATAAGATGTGCAGCGCAGAAAACTGCTGTTTTTAGAACTGAGGGCTGccgattt                                                                                                      >  6:270757/1‑144 (MQ=255)                                                    gcCTCCATCGCAAACATCGCCTTGGGCCACAGCCTCAATGGCAACCTCGTCCACAAATGGATTCAGCTCCACAATCAAAAAGCCTTGGCACTTCAGCTGGGCAGCGCAGCAAACTGCTGTTTTTCGCACTGAGGGCTGCCCAGTTTTCt                                                                                                  <  1:9576/149‑1 (MQ=255)                                                       tCCATCGCAAACATCGCCTTGGGCCACAGCCTCAATGGCAACCTCGTCCACAAATGGATTCAGCTCCACAATCAAAAAGCCTTGGCACTTCAGCTGGGCAGCGCAGCAAACTGCTGTTTTTCGCACTGAGGGCTGCCCAGTTTTCTaa                                                                                                >  8:89670/1‑148 (MQ=255)                                                         cATCGCAAACATCGCCTTGGGCCACAGCCTCAATGGCAACCTCGTCCACAAATGGATTCAGCTCCACAATCAAAAAGCCTTGGCACTTCAGCTGGGCAGCGCAGCAAACTGCTGTTTTTCGCACTGAGGGCTGCCCAGTTTTCTAAc                                                                                               <  2:57955/147‑1 (MQ=255)                                                             gCAAACATCGCCTTGGGCCACAGCCTCAATGGCAACCTCGTCCACAAATGGATTCAGCTCCACAATCAAAAAGCCTTGGCACTTCAGCTGGGCAGCGCAGCAAACTGCTGTTTTTCGCACTGAGGGCTGCCCAGTTTTCTAACAGTTaa                                                                                         <  2:31875/149‑1 (MQ=255)                                                              cAAACATCGCCTTGGGCCACAGCCTCAATGGCAACCTCGTCCACAAATGGATTCAGCTCCACAATCAAAAAGCCTTGGCACTTCAGCTGGGCAGCGCAGCAAACTGCTGTTTTTCGCACTGAGGGCTGCCCAGTTTTCTAACAGTTaaa                                                                                        <  5:122815/149‑1 (MQ=255)                                                               aaaCATCGCCTTGGGCCACAGCCTCAATGGCAACCTCGTCCACAAATGGATTCAGCTCCACAATCAAAAAGCCTTGGCACTTCAGCTGGGCAGCGCAGCAAACTGCTGTTTTTCGCACTGAGGGCTGCCCAGTTTTCTAACAGTTAAAg                                                                                       <  3:1247/149‑1 (MQ=255)                                                                 aCATCGCCTTGGGCCACAGCCTCAATGGCAACCTCGTCCACAAATGGATTCAGCTCCACAATCAAAAAGCCTTGGCACTTCAGCTGGGCAGCGCAGCAAACTGCTGTTTTTCGCACTGAGGGCTGCCCAGTTTTCTAACAGTTAAAGa                                                                                      >  5:253125/1‑148 (MQ=255)                                                                  cATCGCCTTGGGCCACAGCCTCAATGGCAACCTCGTCCACAAATGGATTCAGCTCCACAATCAAAAAGCCTTGGCACTTCAGCTGGGCAGCGCAGCAAACTGCTGTTTTTCGCACTGAGGGCTGCCCAGTTTTCTAACAGTTAAAGaaa                                                                                    <  4:145000/149‑1 (MQ=255)                                                                   aTCGCCTTGGGCCACAGCCTCAATGGCAACCTCGTCCACAAATGGATTCAGCTCCACAATCAAAAAGCCTTGGCACTTCAGCTGGGCAGCGCAGCAAACTGCTGTTTTTCGCACTGAGGGCTGCCCAGTTTTCTAACAGTTAAAGAAAc                                                                                   <  7:89670/149‑1 (MQ=255)                                                                        cTTGGGCCACAGCCTCAATGGCAACCTCGTCCACAAATGGATTCAGCTCCACAATCAAAAAGCCTTGGCACTTCAGCTGGGCAGCGCAGCAAACTGCTGTTTTTCGCACTGAGGGCTGCCCAGTTTTCTAACAGTTAAAGAAACTGCTc                                                                              >  6:98143/1‑149 (MQ=255)                                                                          ccggcactgaggcaggtgagtacgcggcaggttgcgtgccactatgcggagcagtttctttaactgttagaaaaCTGGGCAGCGCAGCAAACTGCTGTTTTTCGCACTGAGGGCTGCCCAGTTTTCTAACa                                                                                              >  8:98483‑M1/75‑131 (MQ=255)                                                                          ccggcactgaggcaggtgagtacgcggcaggttgcgtgccactatgcggagcagtttctttaactgttagaaaaCTGGGCAGCGCAGCAAACTGCTGTTTTTCGCACTGAGGGCTGCCCAGTTTTCTAACa                                                                                              <  7:98483‑M1/57‑1 (MQ=255)                                                                                acaGCCTCAATGGCAACCTCGTCCACAAATGGATTCAGCTCCACAATCAAAAAGCCTTGGCACTTCAGCTGGGCAGCGCAGCAAACTGCTGTTTTTCGCACTGAGGGCTGCCCAGTTTTCTAACAGTTAAAGAAACTGCTCCGCATAGt                                                                      <  6:144222/149‑1 (MQ=255)                                                                                     cTCAATGGCAACCTCGTCCACAAATGGATTCAGCTCCACAATCAAAAAGCCTTGGCACTTCAGCTGGGCAGCGCAGCAAACTGCTGTTTTTCGCACTGAGGGCTGCCCAGTTTTCTAACAGTTAAAGAAACTGCTCCGCATAGTGGCAc                                                                 <  6:253125/149‑1 (MQ=255)                                                                                        aaTGGCAACCTCGTCCACAAATGGATTCAGCTCCACAATCAAAAAGCCTTGGCACTACAGCTGGGCAGCGAAGCAAACTGCTGTTTTTCGCACTGAGGGCTGCCCAGTTTTCTAACAGTTAAAGAAACTGCTCCGCATAGTGGCACGc                                                               >  8:107243/1‑148 (MQ=255)                                                                                            gCAACCTCGTCCACAAATGGATTCAGCTCCACAATCAAAAAGCCTTGGCACTTCAGCTGGGCAGCTCAGCAAACTGCTGTTTTTCGCACTGAGGGCTGCCCAGTTTTCTAACAGTTAAAGAAACTGCTCCGCATAGTGGCACGCAACCt                                                          <  6:153922/149‑1 (MQ=255)                                                                                                 cTCGTCCACAAATGGATTCAGCTCCACAATCAAAAAGCCTTGGCACTTCAGCTGGGCAGCGCAGCAAACTGCTGTTTTTCGCACTGAGGGCTGCCCAGTTTTCTAACAGTTAAAGAAACTGCTCCGCATAGTGGCACGCAACCTGCcgc                                                     <  1:95241/149‑1 (MQ=255)                                                                                                    gTCCACAAATGGATTCAGCTCCACAATCAAAAAGCCTTGGCACTTCAGCTGGGCAGCGCAGCAAACTGCTGTTTTTCGCACTGAGGGCTGCCCAGTTTTCTAACAGTTAAAGAAACTGCTCCGCATAGTGGCACGCAACCTGCCGCGt                                                   >  3:91565/1‑148 (MQ=255)                                                                                                    gTCCACAAATGGATTCAGCTCCACAATCAAAAAGCCTTGGCACTTCAGCTGGGCAGCGCAGCAAACTGCTGTTTTTCGCACTGAGGGCTGCCCAGTTTTCTAACAGTTAAAGAAACTGCTCCGCATAGTGGCACGCAACCTGCCGCGTa                                                  >  2:71142/1‑149 (MQ=255)                                                                                                       cacaAATGGATTCAGCTCCACAATCAAAAAGCCTTGGCACTTCAGCTGGGCAGCGCAGCAAACTGCTGTTTTTCGCACTGAGGGCTGCCCAGTTTTCTAACAGTTAAAGAAACTGCTCCGCATAGTGGCACGCAACCTGc                                                        <  3:111140/140‑1 (MQ=255)                                                                                                       cacaAATGGATTCAGCTCCACAATCAAAAAGCCTTGGCACTTCAGCTGGGCAGCGCAGCAAACTGCTGTTTTTCGCACTGAGGGCTGCCCAGTTTTCTAACAGTTAAAGAAACTGCTCCGCATAGTGGCACGCAACCTGc                                                        >  4:111140/1‑140 (MQ=255)                                                                                                        acaAATGGATTCAGCTCCACAATCAAAAAGCCTTGGCACTTCAGCTGGGCAGCGCAGCAAACTGCTGTTTTTCGCACTGAGGGCTGCCCAGTTTTCTAACAGTTAAAGAAACTGCTCCGCATAGTGGCACGCAACCTGACGCGTACTCa                                              >  1:103525/1‑149 (MQ=255)                                                                                                                    aGCTCCACAATCAAAAAGCCTTGGCACTTCAGCTGGGCAGCGCAGCAAACTGCTGTTTTTCGCACTGAGGGCTGCCCAGTTTTCTAACAGTTAAAGAAACTGCTCCGCATAGTGGCACGCAACCTGCCGCGTACTCACCTGCCTCAGt                                   <  5:98143/148‑1 (MQ=255)                                                                                                                         cacaATCAAAAAGCCTTGGCACTTCAGCTGGGCAGCGCAGCAAACTGCTGTTTTTCGCACTGAGGGCTGCCCAGTTTTCTAACAGTTAAAGAAACTGCTCCGCATAGTGGCACGCAACCTGCcgc                                                     <  6:57749/125‑1 (MQ=255)                                                                                                                         cacaATCAAAAAGCCTTGGCACTTCAGCTGGGCAGCGCAGCAAACTGCTGTTTTTCGCACTGAGGGCTGCCCAGTTTTCTAACAGTTAAAGAAACTGCTCCGCATAGTGGCACGCAACCTGCcgc                                                     >  5:57749/1‑125 (MQ=255)                                                                                                                          acaATCAAAAAGCCTTGGCACTTCAGCTGGGCAGCGCAGCAAACTGCTGTTTTTCGCACTGAGGGCTGCCCAGTTTTCTAACAGTTAAAGAAACTGCTCCGCATAGTGGCACGCAACCTGCCGCGTACTCACCTGCCTCAGTGCCGGCa                            >  7:40797/1‑149 (MQ=255)                                                                                                                           caATCAAAAAGCCTTGGCACTTCAGCTGGGCAGCGCAGCAAACTGCTGTTTTTCGCACTGAGGGCTGCCCAGTTTTCTAACAGTTAAAGAAACTGCTCCGCATAGTGGCACGCAACCTGCCGCGTACTCACCTGCCTCAGTGCCGGCAc                           <  4:192644/149‑1 (MQ=255)                                                                                                                            aaTCAAAAAGCCTTGGCACTTCAGCTGGGCAGCGCAGCAAACTGCTGTTTTTCGCACTGAGGGCTGCCCAGTTTTCTAACAGTTAAAGAAACTGCTCCGCATAGTGGCACGCAAACTGCCGCGTACTCACCTGCCTCAGTGCCGGCAc                           >  1:214640/1‑148 (MQ=255)                                                                                                                                 aaaaGCCTTGGCACTTCAGCTGGGCAGCGCAGCAAACTGCTGTTTTTCGCACTGAGTGCTGCCCAGTTTTCTAACAGTTAAAGAAACTGCTCCGCATAGTGGCACGCAACCTGCCGCGTACTCACCTGCCTCAGTGCCGGCACCTCCtt                     >  5:81802/1‑149 (MQ=255)                                                                                                                                 aaaaGCCTTGGCACTTCAGCTGGGCAGCGCAGCAAACTGCTGTTTTTCGCACTGAGGGCTGCCCAGTTTTCTAACAGTTAAAGAAACTGCTCCGCATAGTGGc                                                                   <  6:231921/103‑1 (MQ=255)                                                                                                                                 aaaaGCCTTGGCACTTCAGCTGGGCAGCGCAGCAAACTGCTGTTTTTCGCACTGAGGGCTGCCCAGTTTTCTAACAGTTAAAGAAACTGCTCCGCATAGTGGc                                                                   >  5:231921/1‑103 (MQ=255)                                                                                                                                  aaaGCCTTGGCACTTCAGCTGGGCAGCGCAGCAAACTGCTGTTTTTCGCACTGAGGGCTGCCCAGTTTTCTAACAGTTAAAGAAACTGCTCCGCATAGTGGCACGCAACCTGCCGCGTACTCACCTGCCTCAGTGCCGGCACCTCCTTg                    >  5:72230/1‑149 (MQ=255)                                                                                                                                  aaaGCCTTGGCACTTCAGCTGGGCAGCGCAGCAAACTGCTGTTTTTCGCACTGAGGGCTGCCCAGTTTTCTAACAGTTAAAGAAACTGCTCCGCATAGTGGCACGCAACCTGCCGCGTACTCACCTGCCTCAGTGCCGGCACCTCCTTg                    <  2:94773/149‑1 (MQ=255)                                                                                                                                          ggCACTTCAGCTGGGCAGCGCAGCAAACTGCTGTTTTTCGCACTGAGGGCTGCCCAGTTTTCTAACAGTTAAAGAAACTGCTCCGCATAGTGGCACGCAACCTGCCGCGTACTCACCTGCCTCAGTGCCGGCACCTCCTTGGCACACCg            >  1:239012/1‑149 (MQ=255)                                                                                                                                           gCACTTCAGCTGTGCATCGCAGTAAACTGCTGTTTTTCGCACTGATGTCTGCCCAGTTTTCTAACAGATAAAGAAACTGCTCCGCATAGTGGCACGCAACCTGCCGCGTACTCACCTGCCTCAGTGCCGGCACCTCCTTGGCACACCg            <  5:270757/148‑1 (MQ=255)                                                                                                                                                  aGCTGGGCAGCGCAGCAAACTGCTGTTTTTCGCACTGAGGGCTGCCCAGTTTTCTAACAGTTAAAGAAACTGCTCCGCATAGTGGCACGCAACCTGCCGCGTACTCACCTGCCTCAGTGCCGGCACCTCCTTGGCACACCGCTCGGTc     <  7:107243/148‑1 (MQ=255)                                                                                                                                                    CTGGGCAGCGCAGCAAACTGCTGTTTTTCGCACTGAGGGCTGCCCAGTTTTCTAACAGTTAAAGAAACTGCTCCGCATAGTGGCACGCAACCTGCCGCGTACTCACCTGCCTCAGTGCCGGCACCTCCTTGGCACACCGCTCGGTCGCa  >  8:123133‑M1/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                     GCGCCGTACCTACAATAAACCTTTCAAAGCCCAGAGTGCGACGAGCCCGGCGCCTCCATCGCAAACATCGCCTTGGGCCACAGCCTCAATGGCAACCTCGTCCACAAATGGATTCAGCTCCACAATCAAAAAGCCTTGGCACTTCAGCTGGGCAGCGCAGCAAACTGCTGTTTTTCGCACTGAGGGCTGCCCAGTTTTCTAACAGTTAAAGAAACTGCTCCGCATAGTGGCACGCAACCTGCCGCGTACTCACCTGCCTCAGTGCCGGCACCTCCTTGGCACACCGCTCGGTCGCA  >  NC_002947/1017887‑1018182

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.