| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2071242 | 35 (0.830) | 3 (0.090) | 3/206 | NT | 9.0% | intergenic (+194/+33) | PP_1846/PP_1847 | group II intron‑encoding maturase/TonB‑dependent ferric siderophore receptor |
| ? | NC_002947 | 5594183 = | 33 (0.980) | intergenic (‑130/+15) | PP_4921/thiC | NCS1 family transporter/phosphomethylpyrimidine synthase | |||||
CCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGTAATCCCCCACATCGCGCCAGTAACGCTTGTCCAGCACGTTATCCA > NC_002947/2071104‑2071390 | ccGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAgg < 5:257440/149‑1 (MQ=255) cctcctACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAg > 5:203246/1‑145 (MQ=255) cctcctACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAg < 6:203246/145‑1 (MQ=255) cTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATAGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGc > 2:26288/1‑149 (MQ=255) tCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAgg > 1:187702/1‑138 (MQ=255) gATTTTCAGGGCCATGGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCg < 7:252120/147‑1 (MQ=255) ttttCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGccc > 5:118189/1‑149 (MQ=255) gCCATTGGGGCTGCTGTGCAGCCCATCGCGCCACAAGCGGGCTTGCCCGGGAAGCCACCACCGTGGTGGATGGCACGGGCTTCGCCGGTGTGCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATc < 3:91895/149‑1 (MQ=37) gctgTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATc > 6:103060/1‑149 (MQ=255) ctgTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCTCAGAGCGGCCCCGGCAATCTAGAAGCTGATc < 5:103060/148‑1 (MQ=255) cAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGaagcc < 5:99549/149‑1 (MQ=255) cAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGaagc < 2:173088/148‑1 (MQ=255) ccaccccaGCGGGCTTGCCCGCTAACCAAACCCCGGGGGGCTTGGCAGGGGCTGGGCCGGTGTGCGCGGCAACGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAg < 6:5847/142‑1 (MQ=255) ccaaccaAGCGGCCTTGCCCCCCAAGCCCACACCGGGGTGGATGGCAGGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCCCAGGCCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAg < 4:175520/144‑1 (MQ=21) cacaAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGc > 6:252483/1‑125 (MQ=255) cacaAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGc < 5:252483/125‑1 (MQ=255) aaGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTAc > 5:239017/1‑149 (MQ=255) gCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTAcgc > 5:67954/1‑149 (MQ=255) cTTGCCCGCGAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGgtaaggtgctgcggtttagactttgtggtacagctggctgccttcctggcggaaccgctcggcctgctcacgca > 6:53407‑M1/1‑75 (MQ=255) ttGCCCGCGAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGgtgaggtgctgcggtttagactttgtggtacagctggctgccttcctggcggaaccgctcggcctgctcacgcat > 8:171334‑M1/1‑74 (MQ=255) cccGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGc > 3:115453/1‑111 (MQ=255) cccGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGc < 4:115453/111‑1 (MQ=255) gcgAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGgtaaggtgctgcggtttagactttgtggtacagctggctgccttcctggcggaaccgctcggcctgctcacgcatgccttg > 4:222853‑M1/1‑68 (MQ=255) aGCCAACCCCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACa < 6:67954/149‑1 (MQ=255) ccAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAgg > 6:54478/1‑149 (MQ=255) cGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTAcgc > 4:218280/1‑124 (MQ=255) cGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTAcgc < 3:218280/124‑1 (MQ=255) tggtggATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGaagccgaaa < 3:100647/108‑1 (MQ=255) tggtggATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGaagccgaaa > 4:100647/1‑108 (MQ=255) aCGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTACTTATCCCCCACGAAAta > 4:4341/1‑148 (MQ=255) cTTCGCCCGTGTTCGGGGGCAAGCCCGCTCCCACAGGTCGCTAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGTAATCCCCca < 3:4341/149‑1 (MQ=255) ttCGCGGGCAAGCCCGCTCCCACAGGgtaaggtgctgcggtttagactttgtggtacagctgcctgccttcctggcggaaccgctcggcctgctcacgcatgccttgctcgaccgtcacatccacggcctcgatcttggcagcgtactc < 7:141401‑M1/149‑124 (MQ=255) cgcgGGTAAGCCCGCTCCCACAGGgtaaggtgctgcggtttagactttgtggtacagctggctgccttcctggcggaaccgctcggcctgctcacgcatgccttgctcgaccgtcacatccacggcctcgatcttggcagcgtactca < 3:16237‑M1/148‑125 (MQ=255) gcgGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAg < 4:193097/109‑1 (MQ=255) gcgGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAg > 3:193097/1‑109 (MQ=255) cgGGCAAGCCCGCTCCCACAGGgtaaggtgctgcggtttagactttgtggtacagctggctgccttcctggcggaaccgctcggcctgctcacgcatgccttgctcgaccgtcacatccacggcctcgatcttggcagcgtactcacgc < 6:276840‑M1/149‑128 (MQ=255) ggCAAGCCCGCTCCCACAGGgtaaggtgctgcggtttagactttgtggtacagctggctgccttcctggcggaaccgctcggcctgctcacgcatgccttgctcgaccgtcacatccacggcctcgatcttggcagcgtactcacgcac > 2:81070‑M1/1‑20 (MQ=255) gCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGTAATCCCCCACATCGCGCCAGTAACGCt < 5:54478/149‑1 (MQ=255) cAAGCCCGCTCCCACAGGgtaaggtgctgcggtttagactttgtggtacagctggctgccttcctggcggaaccgctcggcctgctcacgcatgccttgctcgaccgtcacatccacggcctcgatcttggcagcgtactcacgcactt > 5:128962‑M1/1‑18 (MQ=255) gCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGTAATCCCCCACATCGCGCCAGTAACGCTTGTc < 6:118189/149‑1 (MQ=255) cccGCTCCCACAGGgtaaggtgctgcggtttagactttgtggtacagctggctgccttcctggcggaaccgctcggcctgctcacgcatgccttgctcgaccgtcacatccacggcctcgatcttggcagcgtactcacgcacttcctg > 4:122124‑M1/1‑14 (MQ=255) cccGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGTAATCCCCCACATCGCGCCAGTAACGCTTGTcc > 2:58714/1‑149 (MQ=255) cgcgaacacgGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGTAATCCCCCACATCGCGCCAGTAACGCTTGTCCAg < 1:172127/143‑1 (MQ=255) cGCTCCCACAGGgtaaggtgctgcggtttagactttgtggtacagctggctgccttcctggcggaaccgctcggcctgctcacgcatgccttgctcgaccgtcacatccacggcctcgatc > 7:177113‑M1/1‑12 (MQ=255) cGCTCCCACAGGgtaaggtgctgcggtttagactttgtggtacagctggctgccttcctggcggaaccgctcggcctgctcacgcatgccttgctcgaccgtcacatccacggcctcgatc < 8:177113‑M1/121‑110 (MQ=255) ccACAGGgtgaggtgctgcggtttagactttgtggtacagctggctgccttcctggcggaaccgctcggcctgctcacgcatgccttgctcgaccgtcacatccacggcctcgatcttggcagcgtactcacgcacttcctgggtgatc < 7:171334‑M1/149‑143 (MQ=255) ccACAGGgtaaggtgctgcggtttagactttgtggtacagctggctgccttcctggcggaaccgctcggcctgctcacgcatgccttgctcgaccgtcacatccacggcctcgatcttggcagcgtactcacgcacttcctgggtgatc > 3:246822‑M1/1‑7 (MQ=255) ccACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCACGTAATCCCCCACATCGCGCCAGTCACGCGTGTCCAGCACGt > 5:181578/1‑149 (MQ=255) gggtaaggtgctgcggtttagactttgtggtacagctggctgccttcctggcggaaccgctcggcctgctcacgcatgccttgctcgaccgtcacatccacggcctcgatcttggcagcgtactcacgcacttcctgggtgatcttcat < 3:222853‑M1/149‑148 (MQ=255) ggtaaggtgctgcggtttagactttgtggtacagctggctgccttcctggcggaaccgctcggcctgctcacgcatgccttgctcgaccgtcacatccacggcctcgatcttggcagcgtactcacg > 7:102134‑M1/1‑1 (MQ=255) ggtaaggtgctgcggtttagactttgtggtacagctggctgccttcctggcggaaccgctcggcctgctcacgcatgccttgctcgaccgtcacatccacggcctcgatcttggcagcgtactcacg < 8:102134‑M1/127‑127 (MQ=255) ggtaaggtgctgcggtttagactttgtggtacagctggctgacttcctggcggaaccgctcggcctgctcacgcatgccttgctcgaccgtcacatccacggcctcgatcttggcagcgtactcacgcacttcctgggtgatcttcatc > 6:259011‑M1/1‑1 (MQ=255) gTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAg < 6:180259/102‑1 (MQ=255) gTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAg > 5:180259/1‑102 (MQ=255) gTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGTAATcccc < 2:114452/111‑1 (MQ=255) gTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGTAATcccc > 1:114452/1‑111 (MQ=255) | CCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGTAATCCCCCACATCGCGCCAGTAACGCTTGTCCAGCACGTTATCCA > NC_002947/2071104‑2071390 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |