New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2071242	35 (0.830)	3 (0.090)	3/206	NT	9.0%	intergenic (+194/+33)	PP_1846/PP_1847	group II intron‑encoding maturase/TonB‑dependent ferric siderophore receptor
	?	NC_002947	5594183 =	33 (0.980)					intergenic (‑130/+15)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase

GCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAG‑‑ACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACTTCCTGGGTGATCTTCATC  >  NC_002947/5594039‑5594330                                                                                                                                                 |                                                                                                                                                      ggtggGTGATGTCATGGTCATGGCCGCAGGCGTGATGTTATGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACGGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAg                                                                                                                                                   <  4:161329/147‑1 (MQ=255) gctggGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAg                                                                                                                                                   >  4:40601/1‑149 (MQ=255)          tGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCATGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCCCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCCCACGGGAATGTGCTGCgg                                                                                                                                          >  7:147757/1‑149 (MQ=25)           gtcatggtcatgTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGt                                                                                                                                         >  5:128449/1‑149 (MQ=255)              atggtcatgTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTa                                                                                                                                      <  1:81949/149‑1 (MQ=255)                       tCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCTAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAG‑‑ACTTtgtg                                                                                                                           <  3:40601/149‑1 (MQ=255)                       tCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAG‑‑ACTTtgtg                                                                                                                           <  6:128449/149‑1 (MQ=255)                        ccGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACAGGCAAAGCCGGTGCCATTCAACGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAG‑‑ACTTTGTgg                                                                                                                          >  7:201605/1‑149 (MQ=255)                          gCAGGAGTGATGTTAAGTGCCATAAACCCCCCTGGGGGAGCGGGCTGCCCCGCGAACACCGGCAACGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAG‑‑ACTTTGTGGTa                                                                                                                        <  6:62986/149‑1 (MQ=37)                                      ttAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGGACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCGGCGGTTTAG‑‑ACTTTTTGGTACAGCTGGCTGcc                                                                                                            >  5:217798/1‑149 (MQ=255)                                        tcttccgatatACTACCGTGTGGGAGGGGGCTTGCCCGCGAACACCGTCAAAGCCGGTGCCATGCACCGCTGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAG‑‑ACTTTGTGGTACAGCTGGCTGcc                                                                                                            <  4:223504/140‑1 (MQ=25)                                           tgccATACACAACGGTGGGGGTGCGGGTTTGCCCGCTAACACCGGCAAAGCCGGTGCCTTGCACCGCAGTGTTTGCTTCGCGGTCATGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAG‑‑ACTTTGTGGTACAGCTGGCTGCCTTCCt                                                                                                       <  8:147757/146‑1 (MQ=25)                                                  caccacCCAGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGAGCCATGCACCGCACTTCTTGCTACGCGGGCAATCGCGCTCCCACAGGGTAAGGTGCTCCGGTGTAG‑‑AGATTGTGGTCCCGCTGGCTGCCTTCCTGGCGGaa                                                                                                >  7:174688/1‑149 (MQ=25)                                                    ccaccCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAG‑‑ACTTTGTGGTACAGCTGGCTGcc                                                                                                            >  3:223504/1‑135 (MQ=255)                                                          tgggggCGCGGCCTTGCCCGCGAACACCGGCAACCCGGGTGCCATGCCCCGCAGTGCTGGCTCCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAG‑‑ACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCgg                                                                                        <  7:160790/146‑1 (MQ=38)                                                                   gggCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAG‑‑ACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCAc                                                                               >  5:276840/1‑149 (MQ=255)                                                                     gCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAG‑‑ACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGaa                                                                                                <  1:128188/130‑1 (MQ=255)                                                                     gCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAG‑‑ACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGaa                                                                                                >  2:128188/1‑130 (MQ=255)                                                                      cttgcccgcgaagcaagcactgcggtgcatggcaccggctttgccggtgttcgcgggcaagcccgctcccacaggGTAAGGTGCTGCGGTTTAG‑‑ACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCa                                                                            >  6:53407‑M2/76‑149 (MQ=255)                                                                       ttgcccgcgaagcaagcactgcggtgcatggcaccggctttgccggtgttcgcgggcaagcccgctcccacaggGTGAGGTGCTGCGGTTTAG‑‑ACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCAt                                                                           >  8:171334‑M2/75‑149 (MQ=255)                                                                         gCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAG‑‑ACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGc                                                                         >  8:141401/1‑149 (MQ=255)                                                                             gcgaagcaagcactgcggtgcatggcaccggctttgccggtgttcgcgggcaagcccgctcccacaggGTAAGGTGCTGCGGTTTAG‑‑ACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTg                                                                     >  4:222853‑M2/69‑149 (MQ=255)                                                                               gAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCTCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGCCACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTg                                                                     <  1:77144/149‑1 (MQ=255)                                                                                  cacCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGTAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAG‑‑ACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGa                                                                >  4:16237/1‑149 (MQ=255)                                                                                     cGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAG‑‑ACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCg                                                             >  2:65733/1‑149 (MQ=255)                                                                                       gCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAG‑‑ACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCt                                                                   >  4:85614/1‑141 (MQ=255)                                                                                       gCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAG‑‑ACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCt                                                                   <  3:85614/141‑1 (MQ=255)                                                                                       gCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAG‑‑ACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGt                                                            >  8:81673/1‑148 (MQ=255)                                                                                                   ccATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAG‑‑ACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGc                                                >  6:104477/1‑148 (MQ=255)                                                                                                      tGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAG‑‑ACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTc                                                                                          >  2:54518/1‑103 (MQ=255)                                                                                                      tGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAG‑‑ACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTc                                                                                          <  1:54518/103‑1 (MQ=255)                                                                                                        cACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAG‑‑ACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGAt                                          >  6:184491/1‑149 (MQ=255)                                                                                                           cGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAG‑‑ACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCtt                                       <  8:201605/149‑1 (MQ=255)                                                                                                           cGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGG‑AAGGTGCTGCGGTTTAG‑‑ACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGa                                                                <  3:197273/123‑1 (MQ=255)                                                                                                           cGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGG‑AAGGTGCTGCGGTTTAG‑‑ACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGa                                                                >  4:197273/1‑123 (MQ=255)                                                                                                            gCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAG‑‑ACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTg                                      <  5:104477/149‑1 (MQ=255)                                                                                                                tgcttgctTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAG‑‑ACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTgg                                     >  1:264350/1‑146 (MQ=255)                                                                                                                tgcttgctTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAG‑‑ACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCa                                   <  2:264350/148‑1 (MQ=255)                                                                                                                     gcttCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAG‑‑ACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTAc                             >  4:142438/1‑149 (MQ=255)                                                                                                                       ttcgcgggcaagcccgctcccacaggGTAAGGTGCTGCGGTTTAG‑‑ACTTTGTGGTACAGCTGCCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTc                           <  7:141401‑M2/123‑1 (MQ=255)                                                                                                                         cgcgggtaagcccgctcccacaggGTAAGGTGCTGCGGTTTAG‑‑ACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCa                          <  3:16237‑M2/124‑1 (MQ=255)                                                                                                                           cgggcaagcccgctcccacaggGTAAGGTGCTGCGGTTTAG‑‑ACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGc                       <  6:276840‑M2/127‑1 (MQ=255)                                                                                                                             ggcaagcccgctcccacaggGTAAGGTGCTGCGGTTTAG‑‑ACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCAc                     >  2:81070‑M2/21‑149 (MQ=255)                                                                                                                               caagcccgctcccacaggGTAAGGTGCTGCGGTTTAG‑‑ACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACtt                   >  5:128962‑M2/19‑149 (MQ=255)                                                                                                                                   cccgctcccacaggGTAAGGTGCTGCGGTTTAG‑‑ACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACTTCCTg               >  4:122124‑M2/15‑149 (MQ=255)                                                                                                                                     cgctcccacaggGTAAGGTGCTGCGGTTTAG‑‑ACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATc                                         >  7:177113‑M2/13‑121 (MQ=255)                                                                                                                                     cgctcccacaggGTAAGGTGCTGCGGTTTAG‑‑ACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATc                                         <  8:177113‑M2/109‑1 (MQ=255)                                                                                                                                          ccacaggGTGAGGTGCTGCGGTTTAG‑‑ACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACTTCCTGGGTGATc        <  7:171334‑M2/142‑1 (MQ=255)                                                                                                                                          ccacaggGTAAGGTGCTGCGGTTTAG‑‑ACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACTTCCTGGGTGATc        >  3:246822‑M2/8‑149 (MQ=255)                                                                                                                                               ggGTAAGGTGCTGCGGTTTAG‑‑ACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACTTCCTGGGTGATCTTCAt   <  3:222853‑M2/147‑1 (MQ=255)                                                                                                                                                gGTAAGGTGCTGCGGTTTAG‑‑ACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACg                        <  8:102134‑M2/126‑1 (MQ=255)                                                                                                                                                gGTAAGGTGCTGCGGTTTAG‑‑ACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACg                        >  7:102134‑M2/2‑127 (MQ=255)                                                                                                                                                gGTAAGGTGCTGCGGTTTAG‑‑ACTTTGTGGTACAGCTGGCTGACTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACTTCCTGGGTGATCTTCATc  >  6:259011‑M2/2‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                      GCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAG‑‑ACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACTTCCTGGGTGATCTTCATC  >  NC_002947/5594039‑5594330

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.