New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2074972 =	49 (1.160)	3 (0.080)	3/244	NT	6.2%	coding (407/1188 nt)	ygaY	transporter YgaY
	?	NC_002947	2075028 =	44 (1.100)					coding (351/1188 nt)	ygaY	transporter YgaY

GGCAGGCTGCGGTATAGCGCCAGCGCGGTAAGTGCCATCAGCGCGGCGGCCAGCACGTAGATACTGCGCCAGCCACCCAGCTCGGCCATGAAGCCGGCAGCAGTACGCGCCAGCAGGATGCCCAGCAGCAGGCCGCTCATCAGTGTGCCGACCGCGCGCCCACGCTGATGGGGCTCACTCAGGGTCGCTGCCATCGGCACGAGGATCTGTGCCACCACCGAGAACAGCCCGGTCAGCGCCGTGCCGAGCAGCAGCCAGGGCAGGCTGGGTGCACAGGCGCTGATGACCAGG  >  NC_002947/2074828‑2075118                                                                                                                                                 |                                                                                                                                                   ctgttcgagcagcgccggctgattaccatgataaccgttgtctccaccctgggcctggtcatcagcgcctgtgcacccagcctgccctggctgctgctcggcacggcgctgaccgggctgttctcggtggtggcacagatcctcGTGcc                                                                                                                                                >  5:228888‑M1/145‑149 (MQ=255)    ttcgagcagcgccggctgattaccatgatgaccgttgtctccaccctgggcctggtcatcagcgcctgtgcacccagcctgccctggctgctgctcggcacggcgctgaccgggctgttctcggtggtggcacagatcctcGTGCCGa                                                                                                                                              >  4:192080‑M1/142‑148 (MQ=255)        tGCGGTATAGCGCCAGCGCGGTAAGTGCCATCAGCGCGGCGGCCAGCACGTAGATACTGCGCCAGCCACCCAGCTCGGCCATGAAGCCGGCAGCAGTACGCGCCAGCAGGATGCCCAGCAGCAGGCCGCTCATCAGTGTGCCGACcgcg                                                                                                                                         >  2:232021/1‑149 (MQ=255)            gTATAGCGCCAGCGCGGTAAGTGCCATCAGCGCGGCGGCCAGCACGTAGATACTGCGCCAGCCACCCAGCTCGGCCATGAAGCCGGCAGCAGTACGCGCCAGCAGGATGCCCAGCAGCAGGCCGCTCATCAGTGTGCCGACCGCGCGcc                                                                                                                                     >  1:74642/1‑149 (MQ=255)            gTATAGCGCCAGCGCGGTAAGTGCCATCAGCGCGGCGGCCAGCACGTAGATACTGCGCCAGCCACCCAGCTCGGCCATGAAGCCGGCAGCAGTACGCGCCAGCAGGATGCCCAGCAGCAGGCCGCTCATCAGTGTGCCGACCGCGCGcc                                                                                                                                     >  5:83751/1‑149 (MQ=255)                 gcgcCAGCGCGGTAAGTGCCATCAGCGCGGCGGCCAGCACGTAGATACTGCGCCAGCCACCCAGCTCGGCCATGAAGCCGGCAGCAGTACGCGCCAGCAGGATGCCCAGCAGCAGGCCGCTCATCAGTGTGCCGACCGCGCGCCCACGc                                                                                                                                >  5:271080/1‑149 (MQ=255)                  cgcCAGCGCGGTAAGTGCCATCAGCGCGGCGGCCAGCACGTAGATACTGCGCCAGCCACCCAGCTTGGCCATGAAGCCGGCAGCAGTACGCGCCAGCAGGATGCCCAGCAGCAGGCCGCTCATCAGTGTGCCGACCGCGCGCCCACGCt                                                                                                                               <  4:112160/149‑1 (MQ=255)                         gcgGTAAGTGCCATCAGCGCGGCGGCCAGCACGTAGATACTGCGCCAGCCACCCAGCTCGGCCATGAAGCCGGCAGCAGTACGCGCCAGCAGGATGCCCAGCAGCAGGCCGCTCATCAGTGTGCCGACCGCGCGCCCACGCTGATgggg                                                                                                                        <  5:16192/149‑1 (MQ=255)                          cgGTAAGTGCCATCAGCGCGGCGGCCAGCACGTAGATACTGCGCCAGCCACCCAGCTCGGCCATGAAGCCGGCAGCAGTACGCGCCAGCAGGATGCCCAGCAGCAGGCCGCTCATCAGTGTGCCGACCGCGCGCCCACGCTGATGGGGc                                                                                                                       <  4:265363/149‑1 (MQ=255)                             tAAGTGCCATCAGCGCGGCGGCCAGCACGTAGATACTGCGCCAGCCACCCAGCTCGGCCATGAAGCCGGCAGCAGTACGCGCCAGCAGGATGCCCAGCAGCAGGCCGCTCATCAGTGTGCCGACcgcgc                                                                                                                                        <  7:140114/129‑1 (MQ=255)                             tAAGTGCCATCAGCGCGGCGGCCAGCACGTAGATACTGCGCCAGCCACCCAGCTCGGCCATGAAGCCGGCAGCAGTACGCGCCAGCAGGATCCCCAGCAGAAGGCCGCTCATCAGTCTGCCGACcccgc                                                                                                                                        >  8:140114/1‑129 (MQ=255)                                        aGCGCGGCGGCCAGCACGTAGATACTGCGCCAGCCACCCAGCTCGGCCATGAAGCCGGCAGCAGTACGCGCCAGCAGGATGCCCAGCAGCAGGCCGCTCATCAGTGTGCCGACCGCGCGCCCACGCTGATg                                                                                                                           <  7:4002/131‑1 (MQ=255)                                        aGCGCGGCGGCCAGCACGTAGATACTGCGCCAGCCACCCAGCTCGGCCATGAAGCCGGCAGCAGTACGCGCCAGCAGGATGCCCAGCAGCAGGCCGCTCATCAGTGTGCCGACCGCGCGCCCACGCTGATg                                                                                                                           >  8:4002/1‑131 (MQ=255)                                           tccaccctgggcctggtcatcagcgcctgtgcacccagcctgccctggctgctgctcggcacggcgctgaccgggctgttctcggtggtggcacagatcctcGTGCCGACCGCGCGCCCACGCTGATGGGGCTCACTCAGGGTCGCTGc                                                                                                      <  4:241301‑M1/47‑1 (MQ=255)                                                ggcCAGCACGTAGATACTGCGCCAGCCACCCAGCTCGGCCATGAAGCCGGCAGCAGTACGCGCCAGCAGGATGCCCAGCAGCAGGCCGCTCATCAGTGTGCCGACCGCGCGCCCACGCTGATGGGGCTCACTCAGGGTCGCTGCCATCg                                                                                                 <  4:162931/149‑1 (MQ=255)                                                cctgggcctggtcatcagcgcctgtgcacccagcctgccctggctgctgctcggcacggcgctgaccgggctgttctcggtggtggcacagatcctcGTGc                                                                                                                                                 >  4:180451‑M1/98‑101 (MQ=255)                                                   gggcctggtcatcagcgcctgtgcacccagcctgccctggctgctgctcggcacggcgctgaccgggctgttctcggtggtggcacagatcctcGTGCCGACCGCGCGCCCACGCTGATGGGGCTCACTCAGGGTCGCTGCCATCGGCa                                                                                              >  8:79473‑M1/95‑149 (MQ=255)                                                   cAGCACGTAGATACTGCGCCAGCCACCCAGCTCGGCCATGAAGCCGGCAGCAGTACGCGCCAGCAGGATGCCCAGCAGCAGGCCGCTCATCAgtgt                                                                                                                                                   >  1:243299/1‑96 (MQ=255)                                                   cAGCACGTAGATACTGCGCCAGCCACCCAGCTCGGCCATGAAGCCGGCAGCAGTACGCGCCAGCAGGATGCCCAGCAGCAGGCCGCTCATCAgtgt                                                                                                                                                   <  2:243299/96‑1 (MQ=255)                                                   cAGCACGTAGATACTGCGCCAGCCACCCAGCTCGGCCATGAAGCCGGCAGCAGTACGCGCCAGCAGGATGCCCAGCAGCAGGCCGCTCATCAGTGTGCCGACCGCGCGCCCACGCTGATGGGGCTCACTCAGGGTCGCTGCCATCGGCa                                                                                              >  3:95884/1‑149 (MQ=255)                                                    ggcctggtcatcagcgcctgtgcacccagcctgccctggctgctgctcggcacggcgctgaccgggctgttctcggtggtggcacagatcctcGTGCCGACCGCGCGCCCACGCTGATGGGGCTCACTCAGGGTCGCTGCCATCGGc                                                                                               >  3:241301‑M1/94‑147 (MQ=255)                                                       aCGTAGATACTGCGCCAGCCACCCAGCTCGGCCATGAAGCCGGCAGCAGTACGCGCCAGCAGGATGCCCAGCAGCAGGCCGCTCATCAGTGTGCCGACCGCGCGCCCACGCTGATGGGGctcactca                                                                                                                <  6:168532/127‑1 (MQ=255)                                                       aCGTAGATACTGCGCCAGCCACCCAGCTCGGCCATGAAGCCGGCAGCAGTACGCGCCAGCAGGATGCCCAGCAGCAGGCCGCTCATCAGTGTGCCGACCGCGCGCCCACGCTGATGGGGctcactca                                                                                                                >  5:168532/1‑127 (MQ=255)                                                         gTAGATACTGCGCCAGCCACCCAGCTCGGCCATGAAGCCGGCAGCAGTACGCGCCAGCAGGATGCCCAGCAGCAGGCCGCTCATCAGTGTGCCGACCGCGCGCCCACGCTGATGGGGCTCACTCAGGGTCGCTGCCATCGGCACGAGGa                                                                                        >  3:188266/1‑149 (MQ=255)                                                          tAGATACTGCGCCAGCCACCCAGCTCGGCCATGAAGCCGGCAGCAGTACGCGCCAGCAGGATGCCCAGCAGCAGGCCGCTCATCAGTGTGCCGACCGCGCGCCCACGCTGATGGGGCTCACTCAGGGTCGCTGCCATCGGCACGAGGAt                                                                                       >  1:107088/1‑149 (MQ=255)                                                           aGATACTGCGCCAGCCACCCAGCTCGGCCATGAAGCCGGCAGCAGTACGCGCCAGCAGGATGCCCAGCAGCAGGCCGCTCATCAGTGTGCCGACCGCGCGCCCACGCTGATGGGGCTCACTCAGGGTCGCTGCCATCGGCACGAGGATc                                                                                      >  1:4726/1‑149 (MQ=255)                                                                 tGCGCCAGCCACCCAGCTCGGCCATGAAGCCGGCAGCAGTACGCGCCAGCAGGATGCCCAGCAGCAGGCCGCTCATCAGTGTGCCGACCGCGCGCCCACGCTGATGGGGCTCACTCAGGGTCGCTGCCATCGGCACGa                                                                                           <  1:197670/138‑1 (MQ=255)                                                                 tGCGCCAGCCACCCAGCTCGGCCATGAAGCCGGCAGCAGTACGCGCCAGCAGGATGCCCAGCAGCAGGCCGCTCATCAGTGTGCCGACCGCGCGCCCACGCTGATGGGGCTCACTCAGGGTCGCTGCCATCGGCACGa                                                                                           >  2:197670/1‑138 (MQ=255)                                                                 tGCGCCAGCCACCCAGCTCGGCCATGAAGCCGGCAGCAGTACGCGCCAGCAGGATGCCCAGCAGCAGGCCGCTCATCAGTGTGCCGACCGCGCGCCCACGCTGATGGGGCTCACTCAGGGTCGCTGCCATCGGCACGAGGATCtgt                                                                                   <  3:196219/146‑1 (MQ=255)                                                                 tGCGCCAGCCACCCAGCTCGGCCATGAAGCCGGCAGCAGTACGCGCCAGCAGGATGCCCAGCAGCAGGCCGCTCATCAGTGTGCCGACCGCGCGCCCACGCTGATGGGGCTCACTCAGGGTCGCTGCCATCGGCACGAGGATCtgt                                                                                   >  4:196219/1‑146 (MQ=255)                                                                  gcgcCAGCCACCCAGCTCGGCCATGAAGCCGGCAGCAGTACGCGCCAGCAGGATGCCCAGCAGCAGGCCGCTCATCAGTGTGCCGACCGCGCGCCCACGCTGATGGGGCTCACTCAGGGTCGCTGCCATCGGCACGAGGATCTGTGcca                                                                               >  4:140135/1‑149 (MQ=255)                                                                   cgcCAGCCACCCAGCTCGGCCATGAAGCCGGCAGCAGTACGCGCCAGCAGGATGCCCAGCAGCAGGCCGCTCATCAGTGTGCCGACCGCGCGCCCACGCTGATGGGGCTCACTCAGGGTCGCTGCCATCGGCACGAGGATCTGTGccac                                                                              >  5:371/1‑149 (MQ=255)                                                                     ccagccaCCCAGCTCGGCCATGAAGCCGGCAGCAGTACGCGCCAGCAGGATGCCCAGCAGCAGGCCGCTCATCAGTGTGCCGACCGCGCGCCCACGCTGATGGGGCTCACTCAGGGTCGCTGCCATCGGCACGAGGATCTGTGccacca                                                                            >  4:177445/1‑149 (MQ=255)                                                                      cagccaCCCAGCTCGGCCATGAAGCCGGCAGCAGTACGCGCCAGCAGGATGCCCAGCAGCAGGCCGCTCATCAGTGTGCCGACCGCGCGCCCACGCTGATGGGGCTCACTCAGGGTCGCTGCCATCGGCACGAGGATCTGTGCcaccac                                                                           <  3:140135/149‑1 (MQ=255)                                                                           aCCCAGCTCGGCCATGAAGCCGGCAGCAGTACGCGCCAGCAGGATGCCCAGCAGCAGGCCGCTCATCAGTGTGCCGACCGCGCGCCCACGCTGATGGGGCTCACTCAGGGTCGCTGCCATCGGCACGAGGATCtgt                                                                                   <  8:245403/136‑1 (MQ=255)                                                                           aCCCAGCTCGGCCATGAAGCCGGCAGCAGTACGCGCCAGCAGGATGCCCAGCAGCAGGCCGCTCATCAGTGTGCCGACCGCGCGCCCACGCTGATGGGGCTCACTCAGGGTCGCTGCCATCGGCACGAGGATCtgt                                                                                   >  7:245403/1‑136 (MQ=255)                                                                             ccAGCTCGGCCATGAAGCCGGCAGCAGTACGCGCCAGCAGGATGCCCAGCAGCAGGCCGCTCATCAGTGTGCCGACCGCGCGCCCACGCTGATGGGGCTCACTCAGGGTCGCTGCCATCGGCACGAGGATCTGTGCCACCACCGAGAAc                                                                    >  3:154027/1‑149 (MQ=255)                                                                               aGCTCGGCCATGAAGCCGGCAGCAGTACGCGCCAGCAGGATGCCCAGCAGCAGGCCGCTCATCAGTGTGCCGACCGCGCGCCCACGCTGATGGGGCTCACTCAGGGTCGCTGCCATCGGCACGAGGATCTGTGCCACCACCGAGAACAg                                                                  >  2:177892/1‑149 (MQ=255)                                                                                gCTCGGCCATGAAGCCGGCAGCAGTACGCGCCAGCAGGATGCCCAGCAGCAGGCCGCTCATCAGTGTGCCGACCGCGCGCCCACGCTGATGGGGCTCACTCAGGGTCGCTGCCATCGGCACGAGGATCTGTGCCACCACCGAGAACAGc                                                                 <  6:271080/149‑1 (MQ=255)                                                                                                ggCAGCAGTACGCGCCAGCAGGATGCCCAGCAGCAGGCCGCTCATCAGTGTGCCGACCGCGCGCCCACGCTGATGGGGCTCACTCAGGGTCGCTGCCATCGGCACGAGGATCTGTGCCACCACCGAGAACAGCCCGGTCAGCGCCGTGc                                                 <  6:371/149‑1 (MQ=255)                                                                                                   agcagTACGCGCCAGCAGGATGCCCAGCAGCAGGCCGCTCATCAGTGTGCCGACCGCGCGCCCACGCTGATGGGGCTCACTCAGGGTCGCTGCCATCGGCACGAGGATCTGTGCCACCACCGAGAACAGCCCGGTCAGCGCCGTGCCGa                                              <  1:138270/149‑1 (MQ=255)                                                                                                    gcagTACGCGCCAGCAGGATGCCCAGCAGCAGGCCGCTCATCAGTGTGCCGACCGCGCGCCCACGCTGATGGGGCTCACTCAGGGTCGCTGCCATCGGCACGAGGATCTGTGCCACCACCGAGAACAGCCCGGTCAGCGCCGTGCCGag                                             <  4:95884/149‑1 (MQ=255)                                                                                                      agTACGCGCCAGCAGGATGCCCAGCAGCAGGCCGCTCATCAGTGTGCCGACCGCGCGCCCACGCTGATGGGGCTCACTCAGGGTCGCTGCCATCGGCACGAGGATCTGTGCCACCACCGAGAACAGCCCGGTCAGCGCCGTGCCGag                                             >  5:14754/1‑147 (MQ=255)                                                                                                              ccAGCAGGATGCCCAGCAGCAGGCCGCTCATCAGTGTGCCGACCGCGCGCCCACGCTGATGGGGCTCACTCAGGGTCGCTGCCATCGGCACGAGGATCTGTGCCACCACCGAGAACAGCCCGGTCAGCGCCGTGCCGAGCAGCAGCCAg                                   <  4:61506/149‑1 (MQ=255)                                                                                                                agcagGATGCCCAGCAGCAGGCCGCTCATCAGTGTGCCGACCGCGCGCCCACGCTGATGGGGCTCACTCAGGGTCGCTGCCATCGGCACGAGGATCTGTGCCACCACCGAGAACAGCCCGGTCAGCGCCGTGCCGAGCAGCAGCCAggg                                 <  1:177892/149‑1 (MQ=255)                                                                                                                 gcagGATGCCCAGCAGCAGGCCGCTCATCAGTGTGCCGACCGCGCGCCCACGCTGATGGGGCTCACTCAGGGTCGCt                                                                                                        <  6:112138/77‑1 (MQ=255)                                                                                                                 gcagGATGCCCAGCAGCAGGCCGCTCATCAGTGTGCCGACCGCGCGCCCACGCTGATGGGGCTCACTCAGGGTCGCt                                                                                                        >  5:112138/1‑77 (MQ=255)                                                                                                                         cccAGCAGCAGGCCGCTCATCAGTGTGCCGACCGCGCGCCCACGCTGATGGGGCTCACTCAGGGTCGCTGCCATCGGCACGAGGATCTGTGCCACCACCGAGAACAGCCCGGTCAGCGCCGTGCCGAGCAGCAGCCAGGGCAGGCTgg                         <  6:14754/148‑1 (MQ=255)                                                                                                                          ccAGCAGCAGGCCGCTCATCAGTGTGCCGACCGCGCGCCCACGCTGATGGGGCTCACTCAGGGTCGCTGCCATCGGCACGAGGATCTGTGCCACCACCGAGAACAGCCCGGTCAGCGCCGTGCCGAGCAGCAGCCAGGGCAGGCTGGGt                       >  8:243143/1‑149 (MQ=255)                                                                                                                                   ggCCGCTCATCAGTGTGCCGACCGCGCGCCCACGCTGATGGGGCTCACTCAGGGTCGCTGCCATCGGCACGAGGATCTGTGCCACCACCGAGAACAGCCCGGTCAGCGCCGTGCCGAGCAGCAGCCAGGGCAGGCTGGGTGCACAGgcg              >  4:222597/1‑149 (MQ=255)                                                                                                                                    gCCGCTCATCAGTGTGCCGACCGCGCGCCCACGCTGATGGGGCTCACTCAGGGTCGCTGCCATCGGCACGAGGATCTGTGCCACCACCGAGAACAGCCCGGTCAGCGCCGTGCCGAGCAGCAGCCAGGGCAGGCTGGGTGCACAGgcgc             <  4:154027/149‑1 (MQ=255)                                                                                                                                      cGCTCATCAGTGTGCCGACCGCGCGCCCACGCTGATGGGGCTCACTCAGGGTCGCTGCCATCGGCACGAGGATCTGTGCCACCACCGAGAACAGCCCGGTCAGCGCCGTGCCGAGCAGCAGCCAGGGCAGGCTGGGTGCACAGGCGCt            >  1:113768/1‑148 (MQ=255)                                                                                                                                       gCTCATCAGTGTGCCGACCGCGCGCCCACGCTGATGGGGCTCACTCAGGGTCGCTGCCATCGGCACGAGGATCTGTGCCACCACCGAGAACAGCCCGGTCAGCGCCGTGCCGAGCAGCAGCCAGGGCAGGCTGGGTGCACAGgcg              >  1:130672/1‑145 (MQ=255)                                                                                                                                       gCTCATCAGTGTGCCGACCGCGCGCCCACGCTGATGGGGCTCACTCAGGGTCGCTGCCATCGGCACGAGGATCTGTGCCACCACCGAGAACAGCCCGGTCAGCGCCGTGCCGAGCAGCAGCCAGGGCAGGCTGGGTGCACAGgcg              <  2:130672/145‑1 (MQ=255)                                                                                                                                       gCTCATCAGTGTGCCGACCGCGCGCCCACGCTGATGGGGCTCACTCAGGGTCGCTGCCATCGGCACGAGGATCTGTGCCACCACCGAGAACAGCCCGGTCAGCGCCGTGCCGAGCAGCAGCCAGGGCAGGCTGGGTGCACAGGCGCtga          <  2:74642/149‑1 (MQ=255)                                                                                                                                       gCTCATCAGTGTGCCGAACGCGCGCCCACGCTGATGGGGCTCACTCAGGGTCGGTGCCTTCTTCACGAGGATCTGTGCCACCACCGAGAACAGCCCGGTCAGCGCCGTGCCGAGCAGCAGCCAGGGCAGGCTGTGTGCACAGGCGCtga          <  6:83751/149‑1 (MQ=255)                                                                                                                                           atcaGTGTGCCGACCGCGCGCCCACGCTGATGGGGCTCACTCAGGGTCGCTGCCATCGGCACGAGGATCTGTGCCACCACCGAGAACAGCCCGGTCAGCGCCGTGCCGAGCAGCAGCCAGGGCAGGCTGGGTGCACAGGCGCtgatga       <  4:188266/148‑1 (MQ=255)                                                                                                                                              aGTGTGCCGACCGCGCGCCCACGCTGATGGGGCTCACTCAGGGTCGCTGCCATCGGCACGAGGATCTGTGCCACCACCGAGAACAGCCCGGTCAGCGCCGTGCCGAGCAGCAGCCAGGGCAGGCTGGGTGCACAGGCGCTGATGACCAg   <  7:142116/149‑1 (MQ=255)                                                                                                                                               gtgtGCCGACCGCGCGCCCACGCTGATGGGGCTCACTCAGGGTCGCTGCCATCGGCACGAGGATCTGTGCCACCACCGAGAACAGCCCGGTCAGCGCCGTGCCGAGCAGCAGCCAGGGCAGGCTGGGTGCACAGGCGCTGATGACCAgg  <  2:4726/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                   GGCAGGCTGCGGTATAGCGCCAGCGCGGTAAGTGCCATCAGCGCGGCGGCCAGCACGTAGATACTGCGCCAGCCACCCAGCTCGGCCATGAAGCCGGCAGCAGTACGCGCCAGCAGGATGCCCAGCAGCAGGCCGCTCATCAGTGTGCCGACCGCGCGCCCACGCTGATGGGGCTCACTCAGGGTCGCTGCCATCGGCACGAGGATCTGTGCCACCACCGAGAACAGCCCGGTCAGCGCCGTGCCGAGCAGCAGCCAGGGCAGGCTGGGTGCACAGGCGCTGATGACCAGG  >  NC_002947/2074828‑2075118

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.