New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2472115	25 (0.590)	3 (0.080)	3/244	NT	7.2%	intergenic (+19/+130)	PP_2166/PP_2167	anti‑anti‑sigma factor/PhoD‑like phosphatase
	?	NC_002947	2472313 =	54 (1.350)					coding (1783/1851 nt)	PP_2167	PhoD‑like phosphatase

AGGACCAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGCACAGGCT‑GTAAAAACTCTGAATCTCACTACGCCCGGTTTTTA  >  NC_002947/2471975‑2472260                                                                                                                                             |                                                                                                                                                    aGGACCAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTcgcg                                                                                                                                             <  8:36844/149‑1 (MQ=255)     ccAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGt                                                                                                                                          >  5:61871/1‑148 (MQ=255)      cAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCgg                                                                                                                                            <  8:65990/145‑1 (MQ=255)      cAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCgg                                                                                                                                            >  7:65990/1‑145 (MQ=255)              aGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTc                                                                                                                                <  8:66346/149‑1 (MQ=255)                 tgtgGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCt                                                                                                                              <  8:185956/148‑1 (MQ=255)                      tgCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTacgacg                                                                                                                        <  4:183373/149‑1 (MQ=255)                        cgcTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGc                                                                                                                      <  2:34503/149‑1 (MQ=255)                         gcTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGcc                                                                                                                     <  7:109976/149‑1 (MQ=255)                                    cTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAac                                                                                                          <  6:204316/149‑1 (MQ=255)                                    cTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGACTTCAATTATCTGGTCAATGAGCTGGAGCGGAGCTGATATATAGACTGTGACGGCCTCTTCGCGGGTAAAAACGCGACTACGACGGCCTGCGCCCaaa                                                                                                           >  8:241163/1‑148 (MQ=255)                                     tGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAaca                                                                                                         >  2:71229/1‑149 (MQ=255)                                            gcACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAAtgt                                                                                                  <  3:9897/149‑1 (MQ=255)                                            gcACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAAtgt                                                                                                  <  6:61871/149‑1 (MQ=255)                                                aaGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAAtgtgt                                                                                                >  3:207993/1‑147 (MQ=255)                                                aaGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAAtgtgt                                                                                                <  4:207993/147‑1 (MQ=255)                                                       tCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCAcccc                                                                                       >  5:158776/1‑149 (MQ=255)                                                         aTGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCgcccctgttcatcaaaaaacacctgtcccagcccggcaccattccacagccgttccccggcctt                                                                                     >  2:210158‑M1/1‑85 (MQ=255)                                                         aTGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAAACCCCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTACAccccc                                                                                      >  1:109623/1‑148 (MQ=255)                                                                   aTGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCgcccctgttcatcaaaaaacacctgtcccagcccggcaccattccacagccgttccccggccttgctgtggctg                                                                           <  1:210158‑M1/149‑75 (MQ=255)                                                                   aTGACTACACGCGCGAATCCTTCCATGATCTGTTCAATGCGATGGAGCGGAGCTGATCTATAGCCTGTTCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGgtgt                                                                            <  7:241163/148‑1 (MQ=37)                                                                        tCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGc                                                                      <  1:71229/149‑1 (MQ=255)                                                                         ccAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGC‑g                                                                    <  2:201208/149‑1 (MQ=255)                                                                             ccGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCgcccctgttcatcaaaaaacacctgtcccagcccggcaccattccacagccgttccccggccttgctgtggctgggcgtacgcg                                                                 >  5:228008‑M1/1‑65 (MQ=255)                                                                              cgcgAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGC‑GGGttt                                                               <  4:209127/149‑1 (MQ=255)                                                                                  aaGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGC‑GGGTTTAccc                                                           <  6:158776/149‑1 (MQ=255)                                                                                            tGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGC‑GGGTTTACCCGCGAAGAGGc                                                 <  5:70825/149‑1 (MQ=255)                                                                                                                 gcggagcTGATCTATAGCCTGTGCCGGCCTCTTAGCGGGTTAAACCCCCCCAAACACGGGCAGCGGCCAAAAACCAAATTGTTTGCAACCCCAAAAAGGGGGATGGGCGGGGTTTACACGCG‑AGAAGGCGGCCCAGGCTCGTaaaacac                            >  2:200806/1‑146 (MQ=255)                                                                                                                                  ccTGTGCCGGCCgcccctgttcatcaaaaaacacctgtcccagcccggca                                                                                                               <  4:9646‑M1/50‑39 (MQ=255)                                                                                                                                  ccTGTGCCGGCCgcccctgttcatcaaaaaacacctgtcccagcccggca                                                                                                               >  3:9646‑M1/1‑12 (MQ=255)                                                                                                                                            ccgcccctgttcatcaaaaaacacctgtcccagcccggcaccattccacagccgttccccggccttgctgtggctgggcgtacgcggcaccacctccatttctcggcgcttggtaaaccagttgagcggcgagcgcggtgcatacaacc  <  7:82480‑M1/149‑148 (MQ=255)                                                                                                                                             |                                                                                                                                                    AGGACCAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGCACAGGCT‑GTAAAAACTCTGAATCTCACTACGCCCGGTTTTTA  >  NC_002947/2471975‑2472260

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.