New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2472115	25 (0.590)	3 (0.080)	3/244	NT	7.2%	intergenic (+19/+130)	PP_2166/PP_2167	anti‑anti‑sigma factor/PhoD‑like phosphatase
	?	NC_002947	2472313 =	54 (1.350)					coding (1783/1851 nt)	PP_2167	PhoD‑like phosphatase

GTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGT‑CCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACC  >  NC_002947/2472167‑2472459                                                                                                                                                   |                                                                                                                                                    gtgtCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGgccgcc                                                                                                                                                   >  6:104441/1‑149 (MQ=255)      cACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGt                                                                                                                                              >  2:66738/1‑149 (MQ=255)           ccAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTtcat                                                                                                                                          >  2:245370/1‑148 (MQ=255)                 aGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCaaaaaa                                                                                                                                   <  1:245370/149‑1 (MQ=255)                  ggTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGccc                                                                                                                                                  <  1:237000/133‑1 (MQ=255)                  ggTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGccc                                                                                                                                                  >  2:237000/1‑133 (MQ=255)                   gtgtAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAaca                                                                                                                                 >  6:275381/1‑149 (MQ=255)                   gtgtAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAaca                                                                                                                                 >  2:66198/1‑149 (MQ=255)                    tgtAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAacac                                                                                                                                >  6:120301/1‑149 (MQ=255)                         gAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGT‑c                                                                                                                          >  6:242141/1‑149 (MQ=255)                           gCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGT‑cc                                                                                                                         >  6:75460/1‑148 (MQ=255)                             gggTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGT‑CCCAg                                                                                                                      >  8:1001/1‑149 (MQ=255)                                     ccGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCaaaa                                                                                                                                     >  5:150848/1‑127 (MQ=255)                                     ccGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCaaaa                                                                                                                                     <  6:150848/127‑1 (MQ=255)                                     ccGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGT‑CCCAGCCCGGCAc                                                                                                              <  5:75460/149‑1 (MQ=255)                                     ccGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGT‑CCCAGCCCGGCAc                                                                                                              <  1:66198/149‑1 (MQ=255)                                          aaGAGGACGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTATTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGT‑CCCAGCCCGGCACCATTc                                                                                                         <  7:249167/149‑1 (MQ=255)                                                     acaGGCTGTAGAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGT‑CCCAGCCCGGCACCATTCCACAGCCGTTc                                                                                              >  8:82480/1‑149 (MQ=255)                                                         gCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGT‑CCCAGCCCGGCACCATTCCACAg                                                                                                    >  6:15838/1‑139 (MQ=255)                                                         gCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGT‑CCCAGCCCGGCACCATTCCACAg                                                                                                    <  5:15838/139‑1 (MQ=255)                                                         gCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTCGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGT‑CCCAGCCCGGCACAATTCCACAGCCGTTCCCCg                                                                                          >  6:58456/1‑149 (MQ=255)                                                          cTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAacac                                                                                                                                <  7:80244/111‑1 (MQ=255)                                                          cTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAacac                                                                                                                                >  8:80244/1‑111 (MQ=255)                                                              atgggcctgaatgactccaaccgcgaagccttccatgatctggtcaatgcgctggagcggagctgatctatagcctgtgccggccGCCCCTGTTCATCAAAAAACACCTGT‑CCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCtt                                                                                     >  2:210158‑M2/86‑149 (MQ=255)                                                                    tctGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGT‑CCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCtgtg                                                                               >  5:8924/1‑149 (MQ=255)                                                                      tGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGT‑CCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCtgtg                                                                               <  7:1001/147‑1 (MQ=255)                                                                      tGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGT‑CCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGc                                                                             >  4:206537/1‑149 (MQ=255)                                                                        atgactccaaccgcgaagccttccatgatctggtcaatgcgctggagcggagctgatctatagcctgtgccggccGCCCCTGTTCATCAAAAAACACCTGT‑CCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTg                                                                           <  1:210158‑M2/74‑1 (MQ=255)                                                                        aaTCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGT‑CCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTg                                                                           >  2:164325/1‑149 (MQ=255)                                                                         aTCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCGCCTGTTCATCAAAAAACACCTGT‑CCCAGCCCGGCACCATTCCACAGCCGTTCGCCGGCCTTGCTGTGGCTgg                                                                          <  5:96380/149‑1 (MQ=255)                                                                              aCTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGc                                                                        <  1:66738/147‑1 (MQ=255)                                                                              aCTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGT‑CCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTgg                                                                          >  7:95101/1‑144 (MQ=255)                                                                              aCTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGT‑CCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTgg                                                                          <  8:95101/144‑1 (MQ=255)                                                                                  ccgcgaagccttccatgatctggtcaatgcgctggagcggagctgatctatagcctgtgccggccGCCCCTGTTCATCAAAAAACACCTGT‑CCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTAcgcg                                                                 >  5:228008‑M2/66‑149 (MQ=255)                                                                                  cGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGT‑CCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTAcgc                                                                  <  2:19059/148‑1 (MQ=255)                                                                                    cccGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGT‑CCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTgg                                                                          <  3:146807/138‑1 (MQ=255)                                                                                    cccGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGT‑CCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTgg                                                                          >  4:146807/1‑138 (MQ=255)                                                                                     ccGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGT‑CCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGca                                                              >  2:186855/1‑149 (MQ=255)                                                                                              aaaCTCTTTTTCCTCACCCCCGGCACGATCCATCTGGTAAAACCGCGCCGGCCGCCCCTTTTCATCAAAAAACACCTGT‑CCCACCCCGGCAACATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTcc                                                      <  5:261910/148‑1 (MQ=255)                                                                                               aaCTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAATAACACCTGT‑CCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCa                                                     <  2:6859/148‑1 (MQ=255)                                                                                                 ctctGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGT‑CCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTgg                                                                          >  8:153084/1‑125 (MQ=255)                                                                                                 ctctGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGT‑CCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTgg                                                                          <  7:153084/125‑1 (MQ=255)                                                                                                  tctGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGT‑CCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTtc                                                 >  3:92087/1‑149 (MQ=255)                                                                                                    tGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGT‑CCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTgg                                                                          >  3:258672/1‑122 (MQ=255)                                                                                                    tGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGT‑CCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTgg                                                                          <  4:258672/122‑1 (MQ=255)                                                                                                      tAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGT‑CCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCg                                              <  5:242141/148‑1 (MQ=255)                                                                                                      tAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGT‑CCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCg                                              <  7:10519/148‑1 (MQ=255)                                                                                                        gCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGT‑CCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGgcg                                           <  5:58456/149‑1 (MQ=255)                                                                                                             aCCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGT‑CCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTg                                       <  5:275381/148‑1 (MQ=255)                                                                                                                 ccGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGT‑CCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTaaa                                  >  2:22631/1‑149 (MQ=255)                                                                                                                  cGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGT‑CCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAAc                                 >  6:58499/1‑149 (MQ=255)                                                                                                                       gCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGT‑CCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGtt                            <  3:206537/149‑1 (MQ=255)                                                                                                                       gCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGT‑CCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGtt                            <  5:120301/149‑1 (MQ=255)                                                                                                                         aTCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGT‑CCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTAcgc                                                                  >  8:5934/1‑109 (MQ=255)                                                                                                                         aTCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGT‑CCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTAcgc                                                                  <  7:5934/109‑1 (MQ=255)                                                                                                                            cAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGT‑CCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAgcg                       >  8:84464/1‑149 (MQ=255)                                                                                                                              gCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGT‑CCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAgcggc                     <  1:186855/149‑1 (MQ=255)                                                                                                                                  gTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGT‑CCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGa                   <  1:164325/147‑1 (MQ=255)                                                                                                                                  gTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGT‑CCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGa                   <  5:58499/147‑1 (MQ=255)                                                                                                                                     cacCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGT‑CCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAgcgc               <  5:104441/148‑1 (MQ=255)                                                                                                                                       cctgtgccggccGCCCCTGTTCATCAAAAAACACCTGT‑CCCAGCCCGGCa                                                                                                               >  3:9646‑M2/13‑50 (MQ=255)                                                                                                                                       cctgtgccggccGCCCCTGTTCATCAAAAAACACCTGT‑CCCAGCCCGGCa                                                                                                               <  4:9646‑M2/38‑1 (MQ=255)                                                                                                                                       cccGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGT‑CCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTa                                                                     >  4:98904/1‑92 (MQ=255)                                                                                                                                       cccGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGT‑CCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTa                                                                     <  3:98904/92‑1 (MQ=255)                                                                                                                                        ccGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGT‑CCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTg           >  2:114832/1‑149 (MQ=255)                                                                                                                                                 ccGCCCCTGTTCATCAAAAAACACCTGT‑CCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAAcc  <  7:82480‑M2/147‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                    GTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGT‑CCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACC  >  NC_002947/2472167‑2472459

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.