New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2699263	33 (0.780)	4 (0.100)	4/250	NT	11.1%	coding (1248/1263 nt)	fsr‑II	fosmidomycin efflux system
	?	NC_002947	= 2699330	32 (0.780)					coding (1181/1263 nt)	fsr‑II	fosmidomycin efflux system

GATGAACCAGTCGCTTGGGTAGTCGGTCGCACGGCTACCCACTTCCCAGGTCCACTCATCGACCTCCACCAGCAGTTCACGTTGCGGCTTTACCATCGTGACCTCGTATCGAAGCAGCCTGGCAGCGCCACTTTAGCAGCAACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGTACACCCATTCGATGCCATGCCGGTCGGCCAGTGCGCCCAGGGCGGCTGCACCCACACCGCTGATGCCGAA  >  NC_002947/2699116‑2699409                                                                                                                                                    |                                                                                                                                                   gATGAACCAGTCGCTTGGGTAGTCGGTCGCACGGCTACCCACTTCCCAGGTCCACTCATCGACCTCCACCAGCAGTTCACGTTGCGGCTTTACCATCGTGACCTCGTATCGAAGCAGCCTGGCACCGCCACTTTAGCAGCAACGGCCAg                                                                                                                                                   >  2:166677/1‑149 (MQ=255)          gTCGCTTGGGTAGTCGGTCGCACGGCTACCCACTTCCCAGGTCCACTCATCGACCTCCACCAGCAGTTCACGTTGCGGCTTTACCATCGTGACCTCGTATCGAAGCAGCCTGGCAGCGCCACTTTAGCAGCAACGGCCAGGGCGGGCCt                                                                                                                                          >  2:146294/1‑149 (MQ=255)                       tcggtcgCACGGCTACCCACTTCCCAGGTCCACTCATCGACCTCCACCAGCAGTTCACGTTGCGGCTTTACCATCGTGACCTCGTATCGAAGCAGCCTGGCAGCGCCACTTTAGCAGCAACGGCCAGGGCGGGCCTGCGAGCGGGTGGc                                                                                                                             >  3:17312/1‑149 (MQ=255)                             gCACGGCTACCCACTTCCCAGGTCCACTCATCGACCTCCACCAGCAGTTCACGTTGCGGCTTTACCATCGTGACCTCGTATCGAAGCAGCCTGGCAGCGCCACTTTAGCAGCAACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTa                                                                                                                        <  1:146294/148‑1 (MQ=255)                                 ggCTACCCACTTCCCAGGTCCACTCATCGACCTCCACCAGCAGTTCACGTTGCGGCTTTACCATCGTGACCTCGTATCGAAGCAGCCTGGCAGCGCCACTTTAGCAGCAACGGCCAtcgcgttcctgccgctgctcgggttggccaccg                                                                                                                   >  6:231030‑M1/1‑116 (MQ=255)                                         aCTTCCCAGGTCCACTCATCGACCTCCACCAGCAGTTCACGTTGCGGCTTTACCATCGTGACCTCGTATCGAAGCAGCCTGGCAGCGCCACTTTAGCAGCAACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGc                                                                                                           >  2:40801/1‑149 (MQ=255)                                              ccAGGTCCACTCATCGCCCTCCACCAGCTGTTCACGTTGCGGCTTTACCATCGTGACCTCGTATCGAAGCAGCCTGGCAGCGCCCCTTTAGCAGCACCGGCCAGGCCGGGCCTGCCAGCGGGTGGCCGGTAGCAAGGCGGAGGCCCAcc                                                                                                      >  4:28151/1‑149 (MQ=255)                                                aGGTCCACTCATCGACCTCCACCAGCAGTTCACGTTGCGGCTTTACCATCGTGACCTCGTATCGAAGCAGCCTGGCAGCGCCACTTTAGCAGCAACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAAccc                                                                                                     >  3:179158/1‑148 (MQ=255)                                                          aTCGACCTCCACCAGCAGTTCACGTTGCGGCTTTACCATCGTGACCTCGTATCGAAGCAGCCTGGCAGCGCCACTTTAGCAGCCACGGCCAGGGCGGGCCTGAGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCgg                                                                                            >  3:96287/1‑147 (MQ=255)                                                          aTCGACCTCCACCAGCAGTTCACGTTGCGGCTTTACCATCGTGACCTCGTATCGAAGCAGCCTGGCAGCGCCACTTTAGCAGCAACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAgg                                                                                                                  <  1:115659/125‑1 (MQ=255)                                                          aTCGACCTCCACCAGCAGTTCACGTTGCGGCTTTACCATCGTGACCTCGTATCGAAGCAGCCTGGCAGCGCCACTTTAGCAGCAACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAgg                                                                                                                  >  2:115659/1‑125 (MQ=255)                                                                 tCCACCAGCAGTTCACGTTGCGGCTTTACCATCGTGACCTCGTATCGAAGCAGCCTGGCAGCGCCACTTTAGCAGCAACGGCCAtcgcgttcctgccgctgctcgggttggccaccgccttgctaccggccacccgctcgcaggcccgc                                                                                   >  6:226864‑M1/1‑84 (MQ=255)                                                                   caccaGCAGTTCACGTTGCGGCTTTACCATCGTGACCTCGTATCGAAGCAGCCTGGCAGCGCCACTTTAGCAGCAACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGa                                                                                 >  2:52897/1‑149 (MQ=255)                                                                   caccaGCAGTTCACGTTGCGGCTTTACCATCGTGACCTCGTATCGAAGCAGCCTGGCAGCGCCACTTTAGCAGCAACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGa                                                                                 >  6:67304/1‑149 (MQ=255)                                                                      cagcagTTCACGTTGCGGCTTTACCATCGTGACCTCGTATCGAAGCAGCCTGGCAGCGCCACTTTAGCAGCAACGGCCAtcgcgttcctgccgctgctcgggttggccaccgccttgctaccggccacccgctcgcaggcccgccctgg                                                                              <  5:226864‑M1/149‑71 (MQ=255)                                                                      cagcagTTCACGTTGCGGCTTTACCATCGTGACCTCGTATCGAAGCAGCCTGGCAGCGCCACTTTAGCAGCAACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGAtgg                                                                              <  8:28226‑M2/149‑4 (MQ=255)                                                                        gcagTTCACGTTGCGGCTTTACCATCGTGACCTCGTATCGAAGCAGCCTGGCAGCGCCACTTTAGCAGCAACGGCCAtcgcgttcctgccgctgctcgggttggccaccgccttgctaccggccacccgctcgcaggcccgccctggcc                                                                            <  5:231030‑M1/149‑73 (MQ=255)                                                                          agTTCACGTTGCGGATTTACCATCGTGACCTCGTATCGAAGCAGCCTGGCAGCGCCACTTTAGCAGCAACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTg                                                                          <  3:78586/149‑1 (MQ=255)                                                                             tCACGTTGCGGCTTTACCATCGTGACCTCGTATCGAAGCAGCCTGGCAGCGCCACTTTAGCAGCAACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGt                                                                        <  4:179158/148‑1 (MQ=255)                                                                                  ttGCGGCTTTACCATCGTGACCTCGTATCGAAGCAGCCTGGCAGCGCCACTTTAGCAGCAACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGAtgg                                                                              >  6:51992‑M2/1‑134 (MQ=255)                                                                                  ttGCGGCTTTACCATCGTGACCTCGTATCGAAGCAGCCTGGCAGCGCCACTTTAGCAGCAACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGAtgg                                                                              <  5:51992‑M2/137‑4 (MQ=255)                                                                                           tACCATCGTGACCTCGTATCGAAGCAGCCTGGCAGCGCCACTTTAGCAGCAACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGTACACCCATTCGat                                                           <  1:40801/147‑1 (MQ=255)                                                                                             ccATCGTGACCTCGTATCGAAGCAGCCTGGCAGCGCCACTTTAGCAGCAACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAAcgcg                                                                                  <  6:28603/122‑1 (MQ=255)                                                                                             ccATCGTGACCTCGTATCGAAGCAGCCTGGCAGCGCCACTTTAGCAGCAACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAAcgcg                                                                                  >  5:28603/1‑122 (MQ=255)                                                                                                   tGACCTCGTATCGAAGCAGCCTGGCAGCGCCACTTTAGCAGCAACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGTACACCCATTCGATGCCATGCCgg                                                 >  4:169449/1‑149 (MQ=255)                                                                                                      ccTCGTATCGAAGCAGCCTGGCAGCGCGACTTTAGCAGCAACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGTAGACCCATTCGATGCCATGCCGGTCg                                              <  1:166677/149‑1 (MQ=255)                                                                                                             tCGAAGCAGCCTGGCAGCGCCACTTTAGCAGCAACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGTACACCCATTCGATGCCATGCCGGTCGGCCAGTg                                       >  1:130068/1‑149 (MQ=255)                                                                                                               gAAGCAGCCTGGCAGCGCCACTTTAGCAGCAACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGTACACCCATTCGATGCCATGCCGGTCGGCCAGTgcg                                     >  5:165923/1‑149 (MQ=255)                                                                                                                   cagcCTGGCAGCGCCACTTTAGCAGCAACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGTACACCCATTCGATGCCATGCCGGTCGGCCAGTGCGcc                                   >  4:21756/1‑147 (MQ=255)                                                                                                                       cTGGCAGCGCCACTTTAGCAGCAACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGTACACCCATTCGATGCCATGCCGGTCGGCCAGTGCGCCCAGggc                             <  7:28226/149‑1 (MQ=255)                                                                                                                         ggCAGCGCCACTTTAGCAGCAACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGTACACCCATTCGATGCCATGCCGGTCGGCCAGTGCGCCCAGggcgg                           >  1:265123/1‑149 (MQ=255)                                                                                                                                 cACTTTAGCAGCAACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGTACACCCATTCGATGCCATGCCGGTCGGCCAGTGCGCCCAGggcggc                          <  6:37962/142‑1 (MQ=255)                                                                                                                                 cACTTTAGCAGCAACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGTACACCCATTCGATGCCATGCCGGTCGGCCAGTGCGCCCAGggcggc                          >  5:37962/1‑142 (MQ=255)                                                                                                                                 cACTTTAGCAGCAACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGTACACCCATTCGATGCCATGCCGGTCGGCCAGTGCGCCCAGGGCGGCTGCAccc                   <  3:21756/149‑1 (MQ=255)                                                                                                                                  aCTTTAGCAGCAACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGTACACCCATTCGATGCCATGCCGGTCGGCCAGTGCGCCCAGGGCGGCTGCAcc                    >  1:175433/1‑147 (MQ=255)                                                                                                                                  aCTTTAGCAGCAACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGTACACCCATTCGATGCCATGCCGGTCGGCCAGTGCGCCCAGGGCGGCTGCAcc                    <  2:175433/147‑1 (MQ=255)                                                                                                                                   cTTTAGCAGCAACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGTACACCCATTCGATGCCATGCCGGTCGGCCAGTGCGCCCAGGGCGGCTGCACCca                  >  1:126772/1‑148 (MQ=255)                                                                                                                                      tAGCAGCAACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGTACACCCATTCGATGCCATGCCGGTCGGCCAGTGCGCCCAGGGCGGCTGCACCCACAcc              >  8:38104/1‑149 (MQ=255)                                                                                                                                            caACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGTACACCCATTCGATGCCATGCCGGTCGGCCAGTGCGCCCAGGGCGGCTGCACCCACACCGCTGAt        >  5:123079/1‑149 (MQ=255)                                                                                                                                              aCGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGTACACCCATTCGATGCCATGCCGGTc                                               <  7:243354/108‑1 (MQ=255)                                                                                                                                              aCGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGTACACCCATTCGATGCCATGCCGGTc                                               >  8:243354/1‑108 (MQ=255)                                                                                                                                                ggCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGAtggccgttgctgctaaagtggcgctgccaggctgcttcgatacgaggtcacgatggtaaagccgcaacgtgaactgc    <  5:231030‑M2/149‑78 (MQ=255)                                                                                                                                                  ccAtcgcgttcctgccgctgctcgggttggccaccgccttgctaccggccacccgctcgcaggcccgccctggccgttgctgctaaagtggcgctgccaggctgcttcgatacgaggtcacgatggtaaagccgcaacgtgaactgctg  <  8:28226‑M1/149‑147 (MQ=255)                                                                                                                                                  ccAtcgcgttcctgccgctgctcgggttggccaccgccttgctaccggccacccgctcgcaggcccgccctggccgttgctgctaaagtggcgctgccaggctgcttcgatacgaggtcacgatggtaaagccgcaa              >  6:51992‑M1/1‑3 (MQ=255)                                                                                                                                                  ccAtcgcgttcctgccgctgctcgggttggccaccgccttgctaccggccacccgctcgcaggcccgccctggccgttgctgctaaagtggcgctgccaggctgcttcgatacgaggtcacgatggtaaagccgcaa              <  5:51992‑M1/137‑135 (MQ=255)                                                                                                                                                  ccAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGAtggccgttgctgctaaagtggcgctgccaggctgcttcgatacgaggtcacgatggtaaagccgcaacgtgaactgctg  <  5:226864‑M2/149‑80 (MQ=255)                                                                                                                                                   cAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGTACACCCATTCGATGCCATGCCGGTCGGCCAGTGCGCCCAGGGCGGCTGCACCCacac               >  7:238383/1‑135 (MQ=255)                                                                                                                                                   cAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGTACACCCATTCGATGCCATGCCGGTCGGCCAGTGCGCCCAGGGCGGCTGCACCCacac               <  8:238383/135‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                   GATGAACCAGTCGCTTGGGTAGTCGGTCGCACGGCTACCCACTTCCCAGGTCCACTCATCGACCTCCACCAGCAGTTCACGTTGCGGCTTTACCATCGTGACCTCGTATCGAAGCAGCCTGGCAGCGCCACTTTAGCAGCAACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGTACACCCATTCGATGCCATGCCGGTCGGCCAGTGCGCCCAGGGCGGCTGCACCCACACCGCTGATGCCGAA  >  NC_002947/2699116‑2699409

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.