New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2699263	33 (0.780)	4 (0.100)	4/250	NT	11.1%	coding (1248/1263 nt)	fsr‑II	fosmidomycin efflux system
	?	NC_002947	= 2699330	32 (0.780)					coding (1181/1263 nt)	fsr‑II	fosmidomycin efflux system

CACCAGCAGTTCACGTTGCGGCTTTACCATCGTGACCTCGTATCGAAGCAGCCTGGCAGCGCCACTTTAGCAGCAACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGTACACCCATTCGATGCCATGCCGGTCGGCCAGTGCGCCCAGGGCGGCTGCACCCAC‑ACCGCTGATGCCGAACATCAGCCCGAACATCACCCCCGAAACCATGCCGACCCGGCCTGGCACCGC  >  NC_002947/2699182‑2699460                                                                                                                                                     |                                                                                                                                    caccaGCAGTTCACGTTGCGGCTTTACCATCGTGACCTCGTATCGAAGCAGCCTGGCAGCGCCACTTTAGCAGCAACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGa                                                                                                                                     >  6:67304/1‑149 (MQ=255) caccaGCAGTTCACGTTGCGGCTTTACCATCGTGACCTCGTATCGAAGCAGCCTGGCAGCGCCACTTTAGCAGCAACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGa                                                                                                                                     >  2:52897/1‑149 (MQ=255)    cagcagTTCACGTTGCGGCTTTACCATCGTGACCTCGTATCGAAGCAGCCTGGCAGCGCCACTTTAGCAGCAACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGAtgg                                                                                                                                  <  8:28226‑M2/149‑4 (MQ=255)        agTTCACGTTGCGGATTTACCATCGTGACCTCGTATCGAAGCAGCCTGGCAGCGCCACTTTAGCAGCAACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTg                                                                                                                              <  3:78586/149‑1 (MQ=255)           tCACGTTGCGGCTTTACCATCGTGACCTCGTATCGAAGCAGCCTGGCAGCGCCACTTTAGCAGCAACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGt                                                                                                                            <  4:179158/148‑1 (MQ=255)                ttGCGGCTTTACCATCGTGACCTCGTATCGAAGCAGCCTGGCAGCGCCACTTTAGCAGCAACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGAtgg                                                                                                                                  >  6:51992‑M2/1‑134 (MQ=255)                ttGCGGCTTTACCATCGTGACCTCGTATCGAAGCAGCCTGGCAGCGCCACTTTAGCAGCAACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGAtgg                                                                                                                                  <  5:51992‑M2/137‑4 (MQ=255)                         tACCATCGTGACCTCGTATCGAAGCAGCCTGGCAGCGCCACTTTAGCAGCAACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGTACACCCATTCGat                                                                                                               <  1:40801/147‑1 (MQ=255)                                 tGACCTCGTATCGAAGCAGCCTGGCAGCGCCACTTTAGCAGCAACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGTACACCCATTCGATGCCATGCCgg                                                                                                     >  4:169449/1‑149 (MQ=255)                                    ccTCGTATCGAAGCAGCCTGGCAGCGCGACTTTAGCAGCAACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGTAGACCCATTCGATGCCATGCCGGTCg                                                                                                  <  1:166677/149‑1 (MQ=255)                                           tCGAAGCAGCCTGGCAGCGCCACTTTAGCAGCAACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGTACACCCATTCGATGCCATGCCGGTCGGCCAGTg                                                                                           >  1:130068/1‑149 (MQ=255)                                             gAAGCAGCCTGGCAGCGCCACTTTAGCAGCAACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGTACACCCATTCGATGCCATGCCGGTCGGCCAGTgcg                                                                                         >  5:165923/1‑149 (MQ=255)                                                 cagcCTGGCAGCGCCACTTTAGCAGCAACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGTACACCCATTCGATGCCATGCCGGTCGGCCAGTGCGcc                                                                                       >  4:21756/1‑147 (MQ=255)                                                     cTGGCAGCGCCACTTTAGCAGCAACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGTACACCCATTCGATGCCATGCCGGTCGGCCAGTGCGCCCAGggc                                                                                 <  7:28226/149‑1 (MQ=255)                                                       ggCAGCGCCACTTTAGCAGCAACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGTACACCCATTCGATGCCATGCCGGTCGGCCAGTGCGCCCAGggcgg                                                                               >  1:265123/1‑149 (MQ=255)                                                               cACTTTAGCAGCAACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGTACACCCATTCGATGCCATGCCGGTCGGCCAGTGCGCCCAGggcggc                                                                              <  6:37962/142‑1 (MQ=255)                                                               cACTTTAGCAGCAACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGTACACCCATTCGATGCCATGCCGGTCGGCCAGTGCGCCCAGggcggc                                                                              >  5:37962/1‑142 (MQ=255)                                                               cACTTTAGCAGCAACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGTACACCCATTCGATGCCATGCCGGTCGGCCAGTGCGCCCAGGGCGGCTGCAccc                                                                       <  3:21756/149‑1 (MQ=255)                                                                aCTTTAGCAGCAACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGTACACCCATTCGATGCCATGCCGGTCGGCCAGTGCGCCCAGGGCGGCTGCAcc                                                                        <  2:175433/147‑1 (MQ=255)                                                                aCTTTAGCAGCAACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGTACACCCATTCGATGCCATGCCGGTCGGCCAGTGCGCCCAGGGCGGCTGCAcc                                                                        >  1:175433/1‑147 (MQ=255)                                                                 cTTTAGCAGCAACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGTACACCCATTCGATGCCATGCCGGTCGGCCAGTGCGCCCAGGGCGGCTGCACCca                                                                      >  1:126772/1‑148 (MQ=255)                                                                    tAGCAGCAACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGTACACCCATTCGATGCCATGCCGGTCGGCCAGTGCGCCCAGGGCGGCTGCACCCAC‑Acc                                                                 >  8:38104/1‑149 (MQ=255)                                                                          caACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGTACACCCATTCGATGCCATGCCGGTCGGCCAGTGCGCCCAGGGCGGCTGCACCCAC‑ACCGCTGAt                                                           >  5:123079/1‑149 (MQ=255)                                                                            aCGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGTACACCCATTCGATGCCATGCCGGTc                                                                                                   <  7:243354/108‑1 (MQ=255)                                                                            aCGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGTACACCCATTCGATGCCATGCCGGTc                                                                                                   >  8:243354/1‑108 (MQ=255)                                                                              ggCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGAtggccgttgctgctaaagtggcgctgccaggctgcttcgatacgaggtcacgatggtaaagccgcaacgtgaactgc                                                        <  5:231030‑M2/149‑78 (MQ=255)                                                                                ccAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGAtggccgttgctgctaaagtggcgctgccaggctgcttcgatacgaggtcacgatggtaaagccgcaacgtgaactgctg                                                      <  5:226864‑M2/149‑80 (MQ=255)                                                                                 cAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGTACACCCATTCGATGCCATGCCGGTCGGCCAGTGCGCCCAGGGCGGCTGCACCCac‑ac                                                                  <  8:238383/135‑1 (MQ=255)                                                                                 cAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGTACACCCATTCGATGCCATGCCGGTCGGCCAGTGCGCCCAGGGCGGCTGCACCCac‑ac                                                                  >  7:238383/1‑135 (MQ=255)                                                                                     gcgggcCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGAtggccgttgctgctaaagtggcgctgccaggctgcttcgatacgaggtcacgatggtaaagccgcaacgtgaactgctggtgga                                                 >  6:226864‑M2/1‑65 (MQ=255)                                                                                       gggcCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGTACACCCATTCGATGCCATGCCGGTCGGCCAGTGCGCCCAGGGCGGCTGCACCCAC‑ACCGCTGATGCCGAACATCAGc                                              <  2:265123/149‑1 (MQ=255)                                                                                           cTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGTACACCCATTCGATGCCATGCCGGTCGGCCAGTGCGCCCAGGGCGGCTGCACCCAC‑ACCGCTGATGCCGAAc                                                    <  6:256123/139‑1 (MQ=255)                                                                                           cTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGTACACCCATTCGATGCCATGCCGGTCGGCCAGTGCGCCCAGGGCGGCTGCACCCAC‑ACCGCTGATGCCGAAc                                                    >  5:256123/1‑139 (MQ=255)                                                                                              cGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGTACACCCATTCGATGCCATGCCGGTCGGCCAGTGCGCCCAGGGCGGCTGCACCCAC‑ACCGCTGATGCCGAACATCAGCCCGAAc                                        <  5:67304/148‑1 (MQ=255)                                                                                                          cGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGTACACCCATTCGATGCCATGCCGGTCGGCCAGTGCGCCCAGGGCGGCTGCACCCAC‑ACCGCTGATGCCGAACATCAGCCCGAACATCACCCCCGaaa                           <  6:165923/149‑1 (MQ=255)                                                                                                            gTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGTACACCCATTCGATGCCATGCCGGTCGGCCAGTGCGCCCAGGGCGGCTGCACCCAC‑ACCGCTGATGCCGAACATCAGCCCGAACATCACCCCCGAAAc                          >  7:148768/1‑148 (MQ=255)                                                                                                             tAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGTACACCCATTCGATGCCATGCCGGTCGGCCAGTGCGCCCAGGGCGGCTGCACCCACGACCGCTGATGCCGAACATCAGCCCGAACATCACCCCCGAAAcc                         <  1:52897/149‑1 (MQ=255)                                                                                                             tAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGTACACCCATTCGATGCCATGCCGGTCGGCCAGTGCGCCCAGGGCGGCTGCACCCAC‑ACCGCTGATGCCGAACATCAGCCCGAACATCACCCCCGAAACCa                        <  2:130068/149‑1 (MQ=255)                                                                                                               gCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGTACACCCATTCGATGCCATGCCGGTCGGCCAGTGCGCCCAGGGCGGCTGCACCCAC‑ACCGCTGATGCCGAACATCAGCCCGAACATCACCCCCGAAACCAt                       <  6:123079/148‑1 (MQ=255)                                                                                                                  aGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGTACACCCATTCGATGCCATGCCGGTCGGCCAGTGCGCCCAGGGCGGCTGCACCCAC‑ACCGCTGATGCCGAACATCAGCCCGAACATCACCCCCGAAACCATGcc                    >  1:241927/1‑148 (MQ=255)                                                                                                                    gCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGTACACCCATTCGATGCCATGCCGGTCGGCCAGTGCGCCCAGGGCGGCTGCACCCAC‑ACCGCTGATGCCGAACATCAGCCCGAACATCACCCCCGAAACCATGCCGAc                 <  3:169449/149‑1 (MQ=255)                                                                                                                     cGGTGGCCAACCCGAGCAGCGGCAGGAACGCGAtggccgttgctgctaaagtggcgctgccaggctgcttcgatacgaggtcacgatggtaaagccgcaacgtgaactgctggtggaggtcgatgagtggacctgggaagtgggtagcc                 >  6:231030‑M2/1‑33 (MQ=255)                                                                                                                             aaCCCGAGCAGCGGCAGGAACGCGATGGCTTGGTACACCCATTCGATGCCATGCCGGTCGGCCAGTGCGCCCAGGGCGGCTGCACCCAC‑ACCGCTGATGCCGAACATCAGCCCGAACATCACCCCCGAAACCATGCCGACCCGGCCTgg        >  1:203464/1‑149 (MQ=255)                                                                                                                                                    gATGGCTTGGTACACCCATTCGATGCCATGCCGGTCGGCCAGTGCGCCCAGGGCGGCTGCACCCAC‑ACCGCTGATGCCGAACATCAGCCCGAACATCACCCCCGAAACCATGCCGACCCGGCCTGGCACCGc  >  1:256797/1‑132 (MQ=255)                                                                                                                                                    gATGGCTTGGTACACCCATTCGATGCCATGCCGGTCGGCCAGTGCGCCCAGGGCGGCTGCACCCAC‑ACCGCTGATGCCGAACATCAGCCCGAACATCACCCCCGAAACCATGCCGACCCGGCCTGGCACCGc  <  2:256797/132‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                    CACCAGCAGTTCACGTTGCGGCTTTACCATCGTGACCTCGTATCGAAGCAGCCTGGCAGCGCCACTTTAGCAGCAACGGCCAGGGCGGGCCTGCGAGCGGGTGGCCGGTAGCAAGGCGGTGGCCAACCCGAGCAGCGGCAGGAACGCGATGGCTTGGTACACCCATTCGATGCCATGCCGGTCGGCCAGTGCGCCCAGGGCGGCTGCACCCAC‑ACCGCTGATGCCGAACATCAGCCCGAACATCACCCCCGAAACCATGCCGACCCGGCCTGGCACCGC  >  NC_002947/2699182‑2699460

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.