| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2937686 = | NA (NA) | 48 (1.160) | 19/252 | NT | NA | intergenic (+43/+40) | PP_2569/PP_2570 | MHS family metabolite MFS transporter/transposase |
| ? | NC_002947 | = 2939382 | NA (NA) | intergenic (‑328/+112) | PP_2570/PP_2572 | transposase/hypothetical protein | |||||
GTGGTACCCGATCGTGATTGCCGTGATGACAGCGGTGCTGGGGATCTTCTTCCTGCCTGAGACCAAAGATCGGGATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCA‑ACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTC > NC_002947/2937553‑2937815 | gtgGTACCCGATCGTGATTGCCGTGATGACAGCGGTGCTGGGGATCTTCTTCCTGCCTGAGACCAAAGATCGGGATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTCTCATcaaacaaa < 1:208064/148‑1 (MQ=255) gTACCCGATCGTGATTTCCGTGATGACAGCGGTGCTGGGGATCTTCTTCCTGCCTGAGACCAAAGATCGGGATATCACTCACACCTGAAGCTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGc < 7:41232/149‑1 (MQ=255) gTACCCGATCGTGATTGCCGTGATGACAGCGGTGCTGGGGATCTTCTTCCTGCCTGAGACCAAAGATCGGGATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTCTCATCAAACAAAATg < 7:142514/148‑1 (MQ=255) tACCCGATCGTGATTGCCGTGATGACAGCGGTGCTGGGGATCTTCTTCCTGCCTGAGACCAAAGATCGGGATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGc > 3:236176/1‑148 (MQ=255) tGATTGCCGTGATGACAGCGGTGCTGGGGATCTTCTTCCTGCCTGAGACCAAAGATCGGGATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCA‑ACCCATTGtt > 8:177492/1‑149 (MQ=255) atgaCAGCGGTGCTGGGGATCTTCTTCCTGCCTGAGACCAAAGATCGGGATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCA‑ACCCATTGTTTTCTAAGCACt > 1:97448/1‑149 (MQ=255) aGCGGTGCTGGGGATCTTCTTCCTGCCTGAGACCAAAGATCGGGATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCA‑ACCCATTGTTTTCTAAg < 4:195678/140‑1 (MQ=255) aGCGGTGCTGGGGATCTTCTTCCTGCCTGAGACCAAAGATCGGGATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCA‑ACCCATTGTTTTCTAAg > 3:195678/1‑140 (MQ=255) aGCGGTGCTGGGGATCTTCTTCCTGCCTGAGACCAAAGATCGGGATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCA‑ACCCATTGTTTTCTAAGCACTCAAGc > 5:16512/1‑149 (MQ=255) cGGTGCTGGGGATCTTCTTCCTGCCTGAGACCAAAGATCGGGATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGc > 1:143784/1‑120 (MQ=255) cGGTGCTGGGGATCTTCTTCCTGCCTGAGACCAAAGATCGGGATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGc < 2:143784/120‑1 (MQ=255) gggATCTTCTTCCTGCCTGAGACCAAAGATCGGGATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCA‑ACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGt > 8:192243/1‑149 (MQ=255) gggATCTTCTTCCTGCCTGAGACCAAAGATCGGGATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCA‑ACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGt < 7:179660/149‑1 (MQ=255) cttcttCCTGCCTGAGACCAAAGATCGGGATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCA‑ACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGaga > 5:237378/1‑147 (MQ=255) ctgcctgAGACCAAAGATCGGGATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCA‑ACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGt > 5:232847/1‑149 (MQ=255) tgcctgAGACCAAAGATCGGGATATCACTGACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCA‑ACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGtt > 1:157076/1‑149 (MQ=255) ctgAGACCAAAGATCGGGATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCA‑ACCCATTGTTTTCTAAGCACTCAAGCGGCCACAAGTTGATACCCCAGTTTcc > 3:177303/1‑149 (MQ=255) tgAGACCAAAGATCGGGATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCA‑ACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCg > 7:12215/1‑149 (MQ=255) tgAGACCAAAGATCGGGATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCA‑ACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCg > 5:210038/1‑149 (MQ=255) gagaCCAAAGATCGGGATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCA‑ACCCATTGTTTTCTAAGCACTCCAGCGGCCACCAGTTGATACCCCAGTTTCCgg > 1:101045/1‑149 (MQ=255) gagaCCAAAGATCGGGATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCA‑ACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATa > 5:111974/1‑136 (MQ=255) gagaCCAAAGATCGGGATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCA‑ACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATa < 6:111974/136‑1 (MQ=255) gagaCCAAAGATCGGGATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCA‑ACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCgg > 5:134655/1‑149 (MQ=255) aaaGATCGGGATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCA‑ACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTg < 6:16512/149‑1 (MQ=255) gATCGGGATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCA‑ACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGa < 7:192243/149‑1 (MQ=255) gggATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCA‑ACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGc > 8:115251/1‑148 (MQ=255) gggATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCA‑ACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGc < 4:177303/148‑1 (MQ=255) tcactcacACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCA‑ACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGccc < 6:134655/149‑1 (MQ=255) ctcacACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCA‑ACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGa > 8:249750/1‑149 (MQ=255) acCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCA‑ACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGc > 1:51871/1‑149 (MQ=255) gTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCA‑ACCCATTGTTTTCTAAGCAc > 3:194310/1‑80 (MQ=255) gTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCA‑ACCCATTGTTTTCTAAGCAc < 4:194310/80‑1 (MQ=255) gTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCA‑ACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCaaa < 7:58828/129‑1 (MQ=255) gTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCA‑ACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCaaa > 8:58828/1‑129 (MQ=255) tgTTTGCCGGGCCCGCCCCCTTCGCGGGTTAACCCGCTCTAATAAAAAAAAATCCA‑ACCCATTGTTTTATACGCACTCAAGCGCCCACCTTTTCATACCCCTGTTTCCGGGCTTTGCTAACAAAAGCCCGGACCTGCCGGTCTtggctt < 6:232847/148‑1 (MQ=2) gCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCA‑ACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTtggcttctggc > 5:220570/1‑149 (MQ=38) ccTGTGCCGGCCCCTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCA‑CCCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTtggcttctggct < 7:115251/149‑1 (MQ=38) cTGTGCCGGCCCCTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCA‑ACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTtg > 4:232337/1‑138 (MQ=37) cTGTGCCGGCCCCTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCA‑ACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTtg < 3:232337/138‑1 (MQ=37) ccGCCCCCTTCGCGGTTTCACCCGCTCAACACAAA‑AAAATTCACACCATTTTTTTTATACGCACCCACCCGCCAACCCGTTTAAACCCCTGTGCCGGGGTTTGGCCAACAAACCCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGaa < 2:97448/148‑1 (MQ=255) cGGCCCCTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCA‑ACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTACTGGCTTCGAAct > 6:90175/1‑149 (MQ=17) gCCCCTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGAA‑ACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAActcc < 6:220570/149‑1 (MQ=17) ccccTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCA‑ACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGCTACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAActcct > 3:37321/1‑149 (MQ=17) cccTTCGCGGGTTAACCCGCTCTCATCAAAAAAATTGCA‑ACCCATTGTTTTATAAGCACTCAAGCGGCCACCAGTTTATACCCCAGTTTCCGGGCTTTGCTAAGAAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAActcctc < 6:237378/149‑1 (MQ=11) | GTGGTACCCGATCGTGATTGCCGTGATGACAGCGGTGCTGGGGATCTTCTTCCTGCCTGAGACCAAAGATCGGGATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCA‑ACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTC > NC_002947/2937553‑2937815 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |