New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2937686 =	NA (NA)	48 (1.160)	19/252	NT	NA	intergenic (+43/+40)	PP_2569/PP_2570	MHS family metabolite MFS transporter/transposase
	?	NC_002947	= 2939382	NA (NA)					intergenic (‑328/+112)	PP_2570/PP_2572	transposase/hypothetical protein

CCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAA‑GGGCTGGGTGATCTCCTACAGGTACTGCTGTAGGAACGGGTTCACCCGCGAAAGGATCAACACAGGCCTCGAAAGCTTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCGATCAATCAGTCGAAGTAGCCACGAAGCCCGAATG  >  NC_002947/2939247‑2939522                                                                                                                                         |                                                                                                                                             ccTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAA‑GGGCTGGGTGATCTCCTACAGGTAc                                                                                                                                 <  7:224791/149‑1 (MQ=32)   tAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAA‑GGGCTGGGTGATCTCCTACAGGTActg                                                                                                                               >  2:214827/1‑149 (MQ=33)     aCAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAA‑GGGCTGGGTGATCTCCTACAGGTActgct                                                                                                                             <  8:253962/149‑1 (MQ=35)        aaGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAA‑GGGCTGGGTGATCTCCTACAGGTACTGCTGTa                                                                                                                          <  1:214827/149‑1 (MQ=38)        aaGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAA‑GGGCTGGGTGATCTCCTACAGGTACTGCTGTa                                                                                                                          <  6:57313/149‑1 (MQ=38)             aaaGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAA‑GGGCTGGGTGATCTCCTACAGGTACTGCTGTAGGAAc                                                                                                                     <  3:192836/149‑1 (MQ=255)                       ggCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGGCCGGAA‑GGGCTGGGTGATCTCCTACAGGTACTGCTGTAGGAACGGGTTCAccc                                                                                                           >  1:219942/1‑149 (MQ=255)                              ccGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAACGGGCTGGGTGATCTCCTACAGGTACTGCTGTAGGAACGGGTTCACCCGCGaaa                                                                                                     <  1:205545/149‑1 (MQ=255)                              ccGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAA‑GGGCTGGGTGATCTCCTACAGGTACTGCTGTAGGAACGGGTTCACCCGCGaaa                                                                                                     <  2:219942/148‑1 (MQ=255)                                gggCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAA‑GGGCTGGGTGATCTCCTACAGGTACTGCTGTAGGAACGGGTTCACCCGCGAAAGGa                                                                                                  <  1:103773/149‑1 (MQ=255)                                      aCCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAA‑GGGCTGGGTGATCTCCTACAGGTACTGGTGTAGGAACGGGTTCACCCGCGAAAGGATCAaca                                                                                            >  4:210033/1‑149 (MQ=255)                                       ccGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAA‑GGGCTGGGTGATCTCCTACAGGTACTGCTGTAGGAACGGGTTCACCCGCGAAAGGATCAacac                                                                                           <  3:210033/149‑1 (MQ=255)                                         gCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAA‑GGGCTGGGTGATCTCCTACAGGTACTGCTGTAGGAACGGGTTCACCCGCGAAAGGATCAACACAg                                                                                         <  8:65005/149‑1 (MQ=255)                                         gCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAA‑GGGCTGGGTGATCTCCTACAGGTACTGCTGTAGGAACGGGTTCACCCGCGAAAGGATCAACACAg                                                                                         >  7:236076/1‑149 (MQ=255)                                         gCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAA‑GGGCTGGGTGATCTCCTACAGGTACTGCTGTAGGAACGGGTTCACCCGCGAAAGGATCAACACAg                                                                                         >  5:161392/1‑149 (MQ=255)                                           cttttcttttTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAA‑GGGCTGGGTGATCTCCTACAGGTACTGCTGTa                                                                                                                          <  1:208599/114‑1 (MQ=40)                                           cttttcttttTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAA‑GGGCTGGGTGATCTCCTACAGGTACTGCTGTa                                                                                                                          >  2:208599/1‑114 (MQ=40)                                                   tttCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAA‑GGGCTGGGTGATCTCCTACAGGTACTGCTGTAGGAACGGGTTCACCCGCGAAAGGATCAACACAGGCCTCGAAAg                                                                               >  2:58875/1‑149 (MQ=255)                                                       aaaaTGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAA‑GGGCTGGGTGATCTCCTACAGGTACTGCTGTAGGAACGGGTTCACCAGCGAAAGGATCAACACAGGCCTCGAAAGCttt                                                                           >  5:89785/1‑149 (MQ=255)                                                               aGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAA‑GGGCTGGGTGATCTCCTACAGGTACTGCTGTAGGAACGGGTTCACCCGCGAAAGGATCAACACAg                                                                                         <  1:215314/127‑1 (MQ=255)                                                               aGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAA‑GGGCTGGGTGATCTCCTACAGGTACTGCTGTAGGAACGGGTTCACCCGCGAAAGGATCAACACAg                                                                                         >  2:215314/1‑127 (MQ=255)                                                                   tCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAA‑GGGCTGGGTGATCTCCTACAGGTACTGCTGTAGGAACGGGTTCACCCGCGAAAGGATCAACACAGGCCTCGAAAGCTTTGTAGGAGCGGGt                                                               <  6:161392/149‑1 (MQ=255)                                                                   tCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAA‑GGGCTGGGTGATCTCCTACAGGTACTGCTGTAGGAACGGGTTCACCCGCGAAAGGATCAACACAGGCCTCGAAAGCTTTGTAGGAGCGGGt                                                               >  4:47256/1‑149 (MQ=255)                                                                       tGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAA‑GGGCTGGGTGATCTCCTACAGGTACTGCTGTAGGAACGGGTTCACCCGCGAAAGGATCAACACAGGCCTCGAAAGCTTTGTAGGAGCGGGTTCAc                                                           >  8:185570/1‑149 (MQ=255)                                                                         cGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAA‑GGGCTGGGTGATCTCCTACAGGTACTGCTGTAGGAACGGGTTCACCCGCGAAAGGATCAACACAGGCCTCGAAAGCTTTGTAGGAGCGGGTTCAccc                                                         >  4:240928/1‑149 (MQ=255)                                                                          ggAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAA‑GGGCTGGGTGATCTCCTACAGGTACTGCTGTAGGAACGGGTTCACCCGCGAAAGGATCAACACAGGCCTCGAAAGCTTTGTAGGAGCGGGTTCACCcg                                                        <  6:139023/149‑1 (MQ=255)                                                                              cTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAA‑GGGCTGGGTGATCTCCTACAGGTACTGCTGTAGGAACGGGTTCACCCGCGAAAGGATCAACACAGGCCTCGAAAGCTTTGTAGGAGCGGGTTCACCCGCGaa                                                    <  1:58875/149‑1 (MQ=255)                                                                                            cTCATGTTTGCTGCGCGACAGCGCAGCCCGGAA‑GGGCTGGGTGATCTCCTACAGGTACTGCTGTAGGAACGGGTTCACCCGCGAAAGGATCAACACAGGCCTCGAAAGCTTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAgg                                      >  5:123005/1‑149 (MQ=255)                                                                                               aTGTTTGCTGCGCGACAGCGCAGCCCGGAA‑GGGCTGGGTGATCTCCTACAGGTACTGCTGTAGGAACGGGTTCACCCGCGAAAGGATCAACACAGGCCTCGAAAGCTTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGc                                     <  3:71089/147‑1 (MQ=255)                                                                                                       tgcGCGACAGCGCAGCCCGGAA‑GGGCTGGGTGATCTCCTACAGGTACTGCTGTAGGAACGGGTTCACCCGCGAAAGGATCAACACAGGCCTCGAAAGCTTTGTAGGAGCGGGtt                                                              <  3:44761/114‑1 (MQ=255)                                                                                                       tgcGCGACAGCGCAGCCCGGAA‑GGGCTGGGTGATCTCCTACAGGTACTGCTGTAGGAACGGGTTCACCCGCGAAAGGATCAACACAGGCCTCGAAAGCTTTGTAGGAGCGGGtt                                                              >  4:44761/1‑114 (MQ=255)                                                                                                            gACAGCGCAGCCCGGAA‑GTGCTGGGTGATCTCCTACAGGTACTGCTGTAGGAACGGGTTCACCCGCGAAAGGATCAACACAGGCCTCGAAAGCTTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCGATCAATCAGTCGaa                      <  8:236076/149‑1 (MQ=255)                                                                                                            gACAGCGCAGCCCGGAA‑GGGCTGGGTGATCTCCTACAGGTACTGCTGTAGGAACGGGTTCACCCGCGAAAGGATCAACACAGGCCTCGAAAGCTTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCGATCAATCAGTCGaa                      <  7:185570/149‑1 (MQ=255)                                                                                                            gACAGCGCAGCCCGGAA‑GGGCTGGGTGATCTCCTACAGGTACTGCTGTAGGAACGGGTTCACCCGCGAAAGGATCAACACAGGCCTCGAAAGCTTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCGATCAATCAGTCGaa                      <  6:89785/149‑1 (MQ=255)                                                                                                             aCAGCGCAGCCCGGAA‑GGGCTGGGTGATCTCCTACAGGTACTGCTGTAGGAACGGGTTCACCCGCGAAAGGATCAACACAGGCCTCGAAAGCTTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCGATCAATCAGTCGAAg                     <  3:201996/149‑1 (MQ=255)                                                                                                                 cgcAGCCCGGAA‑GGGCTGGGTGATCTCCTACAGGTACTGCTGTAGGAACGGGTTCACCCGCGAAAGGATCAACACAGGCCTCGAAAGCTTTGTa                                                                        <  5:227215/94‑1 (MQ=255)                                                                                                                 cgcAGCCCGGAA‑GGGCTGGGTGATCTCCTACAGGTACTGCTGTAGGAACGGGTTCACCCGCGAAAGGATCAACACAGGCCTCGAAAGCTTTGTa                                                                        >  6:227215/1‑94 (MQ=255)                                                                                                                  gcAGCCCGGAA‑GGGCTGGGTGATCTCCTACAGGTACTGCTGTAGGAACGGGTTCACCCGCGAAAGGATCAACACAGGCCTCGAAAGCTTTGTAGGAGCGGGTTCACCCGCGaa                                                    >  1:62305/1‑113 (MQ=255)                                                                                                                  gcAGCCCGGAA‑GGGCTGGGTGATCTCCTACAGGTACTGCTGTAGGAACGGGTTCACCCGCGAAAGGATCAACACAGGCCTCGAAAGCTTTGTAGGAGCGGGTTCACCCGCGaa                                                    <  2:62305/113‑1 (MQ=255)                                                                                                                  gcAGCCCGGAA‑GGGCTGGGTGATCTCCTACAGGTACTGCTGTAGGAACGGGTTCACCCGCGAAAGGATCAACACAGGCCTCGAAAGCTTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCGATCAATCAGTCGAAGTAGc                 >  6:187445/1‑148 (MQ=255)                                                                                                                                gCTGGGTGATCTCCTACAGGTACTGCTGTAGGAACGGGTTCACCCGCGAAAGGATCAACACAGGCCTCGAAAGCTTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCGATCAATCAGTCGAAGTAGCCACGAAGCCCGAAt   <  6:123005/149‑1 (MQ=255)                                                                                                                                gCTGGGTGATCTCCTACAGGTACTGCTGTAGGAACGGGTTCACCCGCGAAAGGATCAACACAGGCCTCGAAAGCTTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCGATCAATCAGTCGAAGTAGCCACGAAGCCCGAAt   <  5:187445/149‑1 (MQ=255)                                                                                                                                 cTGGGTGATCTCCTACAGGTACTGCTGTAGGAACGGGTTCACCCGCGAAAGGATCAACACAGGCCTCGAAAGCTTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCGATCAATCAGTCGAAGTAGCCACGAAGCCCGAATg  >  1:6523/1‑149 (MQ=255)                                                                                                                                  tGGGTGATCTCCTACAGGTACTGCTGTAGGAACGGGTTCACCCGCGAAAGGATCAACACAGGc                                                                                       <  6:229036/63‑1 (MQ=255)                                                                                                                                  tGGGTGATCTCCTACAGGTACTGCTGTAGGAACGGGTTCACCCGCGAAAGGATCAACACAGGc                                                                                       >  5:229036/1‑63 (MQ=255)                                                                                                                                     gTGATCTCCTACAGGTACTGCTGTAGGAACGGGTTCACCCGCGAAAGGATCAACACAGGCCTCGAAAGCTTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCGATCAATCAGTCGAAGTAGCCACGAAGCCCGAAt   >  7:2648/1‑144 (MQ=255)                                                                                                                                     gTGATCTCCTACAGGTACTGCTGTAGGAACGGGTTCACCCGCGAAAGGATCAACACAGGCCTCGAAAGCTTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCGATCAATCAGTCGAAGTAGCCACGAAGCCCGAAt   <  8:2648/144‑1 (MQ=255)                                                                                                                                         |                                                                                                                                             CCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAA‑GGGCTGGGTGATCTCCTACAGGTACTGCTGTAGGAACGGGTTCACCCGCGAAAGGATCAACACAGGCCTCGAAAGCTTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCGATCAATCAGTCGAAGTAGCCACGAAGCCCGAATG  >  NC_002947/2939247‑2939522

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.