New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2948421	25 (0.590)	3 (0.070)	3/246	NT	12.0%	coding (45/348 nt)	PP_2581	hypothetical protein
	?	NC_002947	= 2948452	20 (0.500)					coding (14/348 nt)	PP_2581	hypothetical protein

ATGTATTTTCATGAGCGTAGCCAACCTCTGATAACGAATGAGCCATCTGGCCAGCAGGTGTGGGGCGAACCTTGTCTCGCGTTCCGCTACCTTTCTGTGCCTCACACATAGACAGGGAATCAAGAAAAAGTTCGCTACAGCAACAACTTGTAGAAAATCGCCGTGGCGGTTGGTGCTGTGCAGCACCCGCTAAAGGTGCCATTGCGCTCGGTCAACTGCCTGCAAATACCTCACGCAGATGCACCCGATAACTGTCGAACGCTGCAATCGCCCCCGCTA  >  NC_002947/2948280‑2948558                                                                                                                                              |                                                                                                                                          aTGTATTTTCATGAGCGTAGCCAACCTCTGATAACGAATGAGCCATCTGGCCAGCAGGTGTGGGGCGAACCTTGTCTCGCGTTCCGCTACCTTTCTGTGCCTCACACATAGACAGGGAATCAAGAAAAAGTTCGCTACAGCAACAACtt                                                                                                                                    <  6:119360/149‑1 (MQ=255) aTGTATTTTCATGAGCGTAGCCAACCTCTGATAACGAATGAGCCATCTGGCCAGCAGGTGTGGGGCGAACCTTGTCTCGCGTTCCGCTACCTTTCTGTGCCTCACACATAGACAGGGAATCAAGAAAAAGTTCGCTACAGCAACAACtt                                                                                                                                    >  4:224314/1‑149 (MQ=255)                  tAGCCAACCTCTGATAACGAATGAGCCATCTGGCCAGCAGGTGTGGGGCGAACCTTGTCTCGCGTTCCGCTACCTTTCTGTGCCTCACACATAGACAGGGAATCAAGAAAAAGTTCGCTACAGCAACAACTTGTAGAAAATCGCCGTgg                                                                                                                   >  5:156211/1‑149 (MQ=255)                    gCCAACCTCTGATAACGAATGAGCCATCTGGCCAGCAGGTGTGGGGCGAACCTTGTCTCGCGTTCCGCTACCTTTCTGTGCCTCACACATAGACAGGGAATCAAGAAAAAGTTCGCTACAGCAACAACTTGTAGAAAATCGCCGTGGCg                                                                                                                 <  3:204668/149‑1 (MQ=255)                                tAACGAATGAGCCATCTGGCCAGCAGGTGTGGGGCGAACCTTGTCTCGCGTTCCGCTACCTTTCTGTGCCTCACACATAGACAGGGAATCAAGAAAAAGTTCGCTACAGCAACAACTTGTAGAAAATCGCCGTGGCGGTTGGTGCtgtg                                                                                                     <  5:183/149‑1 (MQ=255)                                    gAATGAGCCATCTGGCCAGCAGGTGTGGGGCGAACCTTGTCTCGCGTTCCGCTACCTTTCTGTGCCTCACACATAGACAGGGAATCAAGAAAAAGTTCGCTACAGCAACAACTTGTAGAAAATCGCCGTGGCGGTTGGTGCTGTgcagc                                                                                                 >  3:47851/1‑149 (MQ=255)                                    gAATGAGCCATCTGGCCAGCAGGTGTGGGGCGAACCTTGTCTCGCGTTCCGCTACCTTTCTGTGCCTCACACATAGACAGGGAATCAAGAAAAAGTTCGCTACAGCAACAACTTGTAGAAAATCGCCGTGGCGGTTGGTGCTGTgcag                                                                                                  >  1:106030/1‑148 (MQ=255)                                     aaTGAGCCATCTGGCCAGCAGGTGTGGGGCGAACCTTGTCTCGCGTTCCGCTACCTTTCTGTGCCTCACACATAGACAGGGAATCAAGAAAAAGTTCGCTACAGCAACAACTTGTAGAAAATCGCCGTGGCGGTTGGTGCTGTgcagca                                                                                                >  6:94103/1‑149 (MQ=255)                                         aGCCATCTGGCCAGCAGGTGTGGGGCGAACCTTGTCTCGCGTTCCGCTACCTTTCTGTGCCTCACACATAGACAGGGAATCAAGAAAAAGTTCGCTACAGCAACAACTTGTAGAAAATCGCCGTGGCGGTTGGTGCTGTGCAGCAccc                                                                                             <  2:102771/148‑1 (MQ=255)                                          gCCATCTGGCCAGCAGGTGTGGGGCGAACCTTGTCTCGCGTTCCGCTACCTTTCTGTGCCTCACACATAGACAGGGAATCAAGAAAAAGTTCGCTACAGCAACAACTTGTAGAAAATCGCCGTGGCGGTTGGTGCTGTGCAGCACCCGc                                                                                           <  5:94103/149‑1 (MQ=255)                                           ccATCTGGCCAGCAGGTGTGGGGCGAACCTTGTCTCGCGTTCCGCTACCTTTCTGTGCCTCACACATAGACAGGGAATCAAGAAAAAGTTCGCTACAGCAACAACTTGTAGAAAATCGCCGTGGCGGTTGGTGCTGTGCAGCACCCGCt                                                                                          <  6:156211/149‑1 (MQ=255)                                              tCTGGCCAGCAGGTGTGGGGCGAACCTAGTCTCGCGTTCCGCTACCTTTCTGTGCCTCACACATAGACAGGGAATCAAGAAAAAGTTCGCTACAGCAACAACTTGTAGAAAATCGCCGTGGCGGTTGGTGATGTGCAGCACCCGCTaaa                                                                                       >  8:34996/1‑149 (MQ=255)                                                               gggCGAACCTTGTCTCGCGTTCCGCTACCTTTCTGTGCCTCACACATAGACAGGGAATCAAGAAAAAGTTCGCTACAGCAACAACTTGTAGAAAATCGCCGTGGCGGTTGGTGCTGTGCAGCACCCGCTAAAGGTGCCATTGCGCTCg                                                                       <  2:222204/148‑1 (MQ=255)                                                                    aaCCTTGTCTCGCGTTCCGCTACCTTTCTGTGCCTCACACATAGACAGGGAATCAAGAAAAAGTTCGCTACAGCAACAACTTGTAGAAAATCGCCGTGGCGGTTGGTGCTGTGCAGCACCCGCTAAAGGTGCCATTGCGCTCGGTCAAc                                                                 <  4:47851/149‑1 (MQ=255)                                                                             tcGCGTTCCGCTACCTTTCTGTGCCTCACACATAGACAGGGAATCAAGAAAAAGTTCGCTACAGCAccaaccgccacggcgattttctacaagttgttgctgtagcgaactttttc                                                                                         >  6:213198‑M1/1‑66 (MQ=255)                                                                             tcGCGTTCCGCTACCTTTCTGTGCCTCACACATAGACAGGGAATCAAGAAAAAGTTCGCTACAGCAccaaccgccacggcgattttctacaagttgttgctgtagcgaactttttc                                                                                         <  5:213198‑M1/116‑51 (MQ=255)                                                                               gcgTTCCGCTACCTTTCTGTGCCTCACACATAGACAGGGAATCAAGAAAAAGTTCGCTACAGCAACAACTTGTAGAAAATCGCCGTGGCGGTTGGTGCTGTGCAGCACCCGc                                                                                           <  1:155401/112‑1 (MQ=255)                                                                               gcgTTCCGCTACCTTTCTGTGCCTCACACATAGACAGGGAATCAAGAAAAAGTTCGCTACAGCAACAACTTGTAGAAAATCGCCGTGGCGGTTGGTGCTGTGCAGCACCCGc                                                                                           >  2:155401/1‑112 (MQ=255)                                                                                cgTTCCGCTACCTTTCTGTGCCTCACAAATAGACAGGGAATCAAGAAAAAGTTCGCTACAGCAACAACTTGTAGAAAATCGCCGTGGCGGTTGGTGCTGTGCAGCACCCGCTAAAGGTGCCATTGCGCTCGGTCAACTGCCTGCAAATa                                                     <  7:34996/149‑1 (MQ=255)                                                                                 gTTCCGCTACCTTTCTGTGCCTCACACATAGACAGGGAATCAAGAAAAAGTTCGCTACAGCAACAACTTGTAGAAAATCGCCGTGGCGGTTGGTGCTGTGCAGCACCCGCTAAAGGTGCCATTGCGCTCGGTCAACTGCCTGCa                                                         >  5:265432/1‑144 (MQ=255)                                                                                 gTTCCGCTACCTTTCTGTGCCTCACACATAGACAGGGAATCAAGAAAAAGTTCGCTACAGCAACAACTTGTAGAAAATCGCCGTGGCGGTTGGTGCTGTGCAGCACCCGCTAAAGGTGCCATTGCGCTCGGTCAACTGCCTGCa                                                         <  6:265432/144‑1 (MQ=255)                                                                                                      tCACACATAGACAGGGAATCAAGAAAAAGTTCGCTACAGCAACAACTTGTAGAAAATCGCCGTGGCGGTTGGTGCTGTGCAGCACCCGCTAAAGGTGCCATTGCGCTCGGTCAACTGCCTGCAAATACCTCACGCAGATGCACCCGAt                                >  4:228703/1‑148 (MQ=255)                                                                                                          acaTAGACAGGGAATCAAGAAAAAGTTCGCTACAGCAccaaccgccacggcgattttctacaagttgttgctgtagcgaactttttcttgattccctgtctatgt                                                                       <  5:190278‑M1/105‑69 (MQ=255)                                                                                                          acaTAGACAGGGAATCAAGAAAAAGTTCGCTACAGCAACAACTTGTAGAAAATCGCCGTGGCGGTTGGtgctgtagcgaactttttcttgattccctgtctatgt                                                                       <  5:190278‑M2/105‑38 (MQ=255)                                                                                                          acaTAGACAGGGAATCAAGAAAAAGTTCGCTACAGCAACAACTTGTAGAAAATCGCCGTGGCGGTTGGTGCTGTGCAGCACCCGCTAAAGGTGCCATTGCGCTCGGTCAACTGCCTGCAAATACCTCACGCAGATGCACCCGATAACTg                           <  3:228703/149‑1 (MQ=255)                                                                                                            aTAGACAGGGAATCAAGAAAAAGTTCGCTACAGCAACAACTTGTAGAAAATCGCCGTGGCGGTTGGTGCTGTGCAGCACCCGCTAAAGGTGCCATTGCGCTCGGTCAACTGCCTGCAAATACCTCACGCAGATGCACCCGATAACTGTc                         <  3:224314/149‑1 (MQ=255)                                                                                                                            gAAAAAGTTCGCTACAGCAACAACTTGTAGAAAATCGCCGTGGCGGTTGGtgctgtagcgaactttttcttgattccctgtctatgtgtgaggcacagaaaggtagcggaacgcga                                          <  5:213198‑M2/116‑67 (MQ=255)                                                                                                                            gAAAAAGTTCGCTACAGCAACAACTTGTAGAAAATCGCCGTGGCGGTTGGtgctgtagcgaactttttcttgattccctgtctatgtgtgaggcacagaaaggtagcggaacgcga                                          >  6:213198‑M2/1‑50 (MQ=255)                                                                                                                             aaaaaGTTCGCTACAGCAACAACTTGTAGAAAATCGCCGTGGCGGTTGGTGCTGTGCAGCACCCGCTAAAGGTGCCATTGCGCTCGGTCAACTGCCTGCAAATACCTCACGCAGATGCACCCGATAACTGTCGAACGCTGCAATCGccc        >  5:121846/1‑149 (MQ=255)                                                                                                                                   ttCGCTACAGCAACAACTTGTAGAAAATCGCCGTGGCGGTTGGTGCTGTGCAGCACCCGCTAAAGGTGCCATTGCGCTCGGTCAACTGCCTGCAAATACCTCACGCAGATGCACCCGATAACTGTCGAACGCTGCAATCGCCCCCGCTa  >  1:75516/1‑149 (MQ=255)                                                                                                                                   ttCGCTACAGCAACAACTTGTAGAAAATCGCCGTGGCGGTTGGTGCTGTGCAGCACCCGCTAAAGGTGCCATTGCGCTCGGTCAACTGCCTGCAAATACCTCACGCAGATGCACCCGATAACTGTCGAACGCTGCAATCGCCCCCGCTa  >  1:72112/1‑149 (MQ=255)                                                                                                                                              |                                                                                                                                          ATGTATTTTCATGAGCGTAGCCAACCTCTGATAACGAATGAGCCATCTGGCCAGCAGGTGTGGGGCGAACCTTGTCTCGCGTTCCGCTACCTTTCTGTGCCTCACACATAGACAGGGAATCAAGAAAAAGTTCGCTACAGCAACAACTTGTAGAAAATCGCCGTGGCGGTTGGTGCTGTGCAGCACCCGCTAAAGGTGCCATTGCGCTCGGTCAACTGCCTGCAAATACCTCACGCAGATGCACCCGATAACTGTCGAACGCTGCAATCGCCCCCGCTA  >  NC_002947/2948280‑2948558

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.