New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2948421	25 (0.590)	3 (0.070)	3/246	NT	12.0%	coding (45/348 nt)	PP_2581	hypothetical protein
	?	NC_002947	= 2948452	20 (0.500)					coding (14/348 nt)	PP_2581	hypothetical protein

TAACGAATGAGCCATCTGGCCAGCAGGTGTGGGGCGAACCTTGTCTCGCGTTCCGCTACCTTTCTGTGCCTCACACATAGACAGGGAATCAAGAAAAAGTTCGCTACAGCAACAACTTGTAGAAAATCGCCGTGGCGGTTGGTGCTGTGCAGCACCCGCTAAAGGTGCCATTGCGCTCGGTCAACTGCCTGCAAATACCTCACGCAGATGCACCCGATAACTGTCGAACGCTGCAATCGCCCCCGCTACCACCTCTGCTTCCTCCTGCTCCCCCAGCACCAGGCTGTC  >  NC_002947/2948311‑2948598                                                                                                                                              |                                                                                                                                                   tAACGAATGAGCCATCTGGCCAGCAGGTGTGGGGCGAACCTTGTCTCGCGTTCCGCTACCTTTCTGTGCCTCACACATAGACAGGGAATCAAGAAAAAGTTCGCTACAGCAACAACTTGTAGAAAATCGCCGTGGCGGTTGGTGCtgtg                                                                                                                                             <  5:183/149‑1 (MQ=255)     gAATGAGCCATCTGGCCAGCAGGTGTGGGGCGAACCTTGTCTCGCGTTCCGCTACCTTTCTGTGCCTCACACATAGACAGGGAATCAAGAAAAAGTTCGCTACAGCAACAACTTGTAGAAAATCGCCGTGGCGGTTGGTGCTGTgcagc                                                                                                                                         >  3:47851/1‑149 (MQ=255)     gAATGAGCCATCTGGCCAGCAGGTGTGGGGCGAACCTTGTCTCGCGTTCCGCTACCTTTCTGTGCCTCACACATAGACAGGGAATCAAGAAAAAGTTCGCTACAGCAACAACTTGTAGAAAATCGCCGTGGCGGTTGGTGCTGTgcag                                                                                                                                          >  1:106030/1‑148 (MQ=255)      aaTGAGCCATCTGGCCAGCAGGTGTGGGGCGAACCTTGTCTCGCGTTCCGCTACCTTTCTGTGCCTCACACATAGACAGGGAATCAAGAAAAAGTTCGCTACAGCAACAACTTGTAGAAAATCGCCGTGGCGGTTGGTGCTGTgcagca                                                                                                                                        >  6:94103/1‑149 (MQ=255)          aGCCATCTGGCCAGCAGGTGTGGGGCGAACCTTGTCTCGCGTTCCGCTACCTTTCTGTGCCTCACACATAGACAGGGAATCAAGAAAAAGTTCGCTACAGCAACAACTTGTAGAAAATCGCCGTGGCGGTTGGTGCTGTGCAGCAccc                                                                                                                                     <  2:102771/148‑1 (MQ=255)           gCCATCTGGCCAGCAGGTGTGGGGCGAACCTTGTCTCGCGTTCCGCTACCTTTCTGTGCCTCACACATAGACAGGGAATCAAGAAAAAGTTCGCTACAGCAACAACTTGTAGAAAATCGCCGTGGCGGTTGGTGCTGTGCAGCACCCGc                                                                                                                                   <  5:94103/149‑1 (MQ=255)            ccATCTGGCCAGCAGGTGTGGGGCGAACCTTGTCTCGCGTTCCGCTACCTTTCTGTGCCTCACACATAGACAGGGAATCAAGAAAAAGTTCGCTACAGCAACAACTTGTAGAAAATCGCCGTGGCGGTTGGTGCTGTGCAGCACCCGCt                                                                                                                                  <  6:156211/149‑1 (MQ=255)               tCTGGCCAGCAGGTGTGGGGCGAACCTAGTCTCGCGTTCCGCTACCTTTCTGTGCCTCACACATAGACAGGGAATCAAGAAAAAGTTCGCTACAGCAACAACTTGTAGAAAATCGCCGTGGCGGTTGGTGATGTGCAGCACCCGCTaaa                                                                                                                               >  8:34996/1‑149 (MQ=255)                                gggCGAACCTTGTCTCGCGTTCCGCTACCTTTCTGTGCCTCACACATAGACAGGGAATCAAGAAAAAGTTCGCTACAGCAACAACTTGTAGAAAATCGCCGTGGCGGTTGGTGCTGTGCAGCACCCGCTAAAGGTGCCATTGCGCTCg                                                                                                               <  2:222204/148‑1 (MQ=255)                                     aaCCTTGTCTCGCGTTCCGCTACCTTTCTGTGCCTCACACATAGACAGGGAATCAAGAAAAAGTTCGCTACAGCAACAACTTGTAGAAAATCGCCGTGGCGGTTGGTGCTGTGCAGCACCCGCTAAAGGTGCCATTGCGCTCGGTCAAc                                                                                                         <  4:47851/149‑1 (MQ=255)                                                gcgTTCCGCTACCTTTCTGTGCCTCACACATAGACAGGGAATCAAGAAAAAGTTCGCTACAGCAACAACTTGTAGAAAATCGCCGTGGCGGTTGGTGCTGTGCAGCACCCGc                                                                                                                                   <  1:155401/112‑1 (MQ=255)                                                gcgTTCCGCTACCTTTCTGTGCCTCACACATAGACAGGGAATCAAGAAAAAGTTCGCTACAGCAACAACTTGTAGAAAATCGCCGTGGCGGTTGGTGCTGTGCAGCACCCGc                                                                                                                                   >  2:155401/1‑112 (MQ=255)                                                 cgTTCCGCTACCTTTCTGTGCCTCACAAATAGACAGGGAATCAAGAAAAAGTTCGCTACAGCAACAACTTGTAGAAAATCGCCGTGGCGGTTGGTGCTGTGCAGCACCCGCTAAAGGTGCCATTGCGCTCGGTCAACTGCCTGCAAATa                                                                                             <  7:34996/149‑1 (MQ=255)                                                  gTTCCGCTACCTTTCTGTGCCTCACACATAGACAGGGAATCAAGAAAAAGTTCGCTACAGCAACAACTTGTAGAAAATCGCCGTGGCGGTTGGTGCTGTGCAGCACCCGCTAAAGGTGCCATTGCGCTCGGTCAACTGCCTGCa                                                                                                 >  5:265432/1‑144 (MQ=255)                                                  gTTCCGCTACCTTTCTGTGCCTCACACATAGACAGGGAATCAAGAAAAAGTTCGCTACAGCAACAACTTGTAGAAAATCGCCGTGGCGGTTGGTGCTGTGCAGCACCCGCTAAAGGTGCCATTGCGCTCGGTCAACTGCCTGCa                                                                                                 <  6:265432/144‑1 (MQ=255)                                                                       tCACACATAGACAGGGAATCAAGAAAAAGTTCGCTACAGCAACAACTTGTAGAAAATCGCCGTGGCGGTTGGTGCTGTGCAGCACCCGCTAAAGGTGCCATTGCGCTCGGTCAACTGCCTGCAAATACCTCACGCAGATGCACCCGAt                                                                        >  4:228703/1‑148 (MQ=255)                                                                           acaTAGACAGGGAATCAAGAAAAAGTTCGCTACAGCAACAACTTGTAGAAAATCGCCGTGGCGGTTGGtgctgtagcgaactttttcttgattccctgtctatgt                                                                                                               <  5:190278‑M2/105‑38 (MQ=255)                                                                           acaTAGACAGGGAATCAAGAAAAAGTTCGCTACAGCAACAACTTGTAGAAAATCGCCGTGGCGGTTGGTGCTGTGCAGCACCCGCTAAAGGTGCCATTGCGCTCGGTCAACTGCCTGCAAATACCTCACGCAGATGCACCCGATAACTg                                                                   <  3:228703/149‑1 (MQ=255)                                                                             aTAGACAGGGAATCAAGAAAAAGTTCGCTACAGCAACAACTTGTAGAAAATCGCCGTGGCGGTTGGTGCTGTGCAGCACCCGCTAAAGGTGCCATTGCGCTCGGTCAACTGCCTGCAAATACCTCACGCAGATGCACCCGATAACTGTc                                                                 <  3:224314/149‑1 (MQ=255)                                                                                             gAAAAAGTTCGCTACAGCAACAACTTGTAGAAAATCGCCGTGGCGGTTGGtgctgtagcgaactttttcttgattccctgtctatgtgtgaggcacagaaaggtagcggaacgcga                                                                                  <  5:213198‑M2/116‑67 (MQ=255)                                                                                             gAAAAAGTTCGCTACAGCAACAACTTGTAGAAAATCGCCGTGGCGGTTGGtgctgtagcgaactttttcttgattccctgtctatgtgtgaggcacagaaaggtagcggaacgcga                                                                                  >  6:213198‑M2/1‑50 (MQ=255)                                                                                              aaaaaGTTCGCTACAGCAACAACTTGTAGAAAATCGCCGTGGCGGTTGGTGCTGTGCAGCACCCGCTAAAGGTGCCATTGCGCTCGGTCAACTGCCTGCAAATACCTCACGCAGATGCACCCGATAACTGTCGAACGCTGCAATCGccc                                                >  5:121846/1‑149 (MQ=255)                                                                                                    ttCGCTACAGCAACAACTTGTAGAAAATCGCCGTGGCGGTTGGTGCTGTGCAGCACCCGCTAAAGGTGCCATTGCGCTCGGTCAACTGCCTGCAAATACCTCACGCAGATGCACCCGATAACTGTCGAACGCTGCAATCGCCCCCGCTa                                          >  1:75516/1‑149 (MQ=255)                                                                                                    ttCGCTACAGCAACAACTTGTAGAAAATCGCCGTGGCGGTTGGTGCTGTGCAGCACCCGCTAAAGGTGCCATTGCGCTCGGTCAACTGCCTGCAAATACCTCACGCAGATGCACCCGATAACTGTCGAACGCTGCAATCGCCCCCGCTa                                          >  1:72112/1‑149 (MQ=255)                                                                                                                acaacTTGTAGAAAATCGCCGTGGCGGTTGGTGCTGTGCAGCACCCGCTAAAGGTGCCATTGCGCTCGGTCAACTGCCTGCAAATACCTCACGCAGATGCACCCGATAACTGTCGAACGCTGCAATCGCCCCCGCTACCACCTCTGCtt                              >  3:250542/1‑149 (MQ=255)                                                                                                                           aaaaTCGCCGTGGCGGTTGGTGCTGTGCAGCACCCGCTAAAGGTGCCATTGCGCTCGGTCAACTGCCTGCAAATACCTCACGCAGATGCACCCGATAACTGTCGAACGCTGCAATCGCCCCCGCTACCACCTCTGCTTCCTCCTGCTcc                   >  3:51340/1‑149 (MQ=255)                                                                                                                                             ggTGCTGTGCAGCACCCGCTAAAGGTGCCATTGCGCTCGGTCAACTGCCTGCAAATACCTCACGCAGATGCACCCGATAACTGTCGAACGCTGCAATCGCCCCCGCTACCACCTCTGCTTCCTCCTGCTCCCCCAGCACCAGGCTGTc  <  4:250542/148‑1 (MQ=255)                                                                                                                                              |                                                                                                                                                   TAACGAATGAGCCATCTGGCCAGCAGGTGTGGGGCGAACCTTGTCTCGCGTTCCGCTACCTTTCTGTGCCTCACACATAGACAGGGAATCAAGAAAAAGTTCGCTACAGCAACAACTTGTAGAAAATCGCCGTGGCGGTTGGTGCTGTGCAGCACCCGCTAAAGGTGCCATTGCGCTCGGTCAACTGCCTGCAAATACCTCACGCAGATGCACCCGATAACTGTCGAACGCTGCAATCGCCCCCGCTACCACCTCTGCTTCCTCCTGCTCCCCCAGCACCAGGCTGTC  >  NC_002947/2948311‑2948598

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.