New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2992707 =	27 (0.640)	3 (0.080)	3/242	NT	10.1%	coding (366/870 nt)	PP_2616	hypothetical protein
	?	NC_002947	2992743 =	28 (0.710)					coding (330/870 nt)	PP_2616	hypothetical protein

GCGGGTAATCACGGTGAAGATTTTTTCCCCACCCCAGGTCTCGTCGTGGAAGATGCTGAGCAGCGGCTCCTGGCTCCAGCAGCTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAATGTTGTCGATCTGGCTGCGTACTTGCTGGTGCACGTCCTGGATGTTCGGCAGCTCGTCCAGCGTACGCAGGCGTATGACCAAGCCGAACAACGGTG  >  NC_002947/2992560‑2992852                                                                                                                                                    |                                                                                                                                                  gCGGGTAATCACGGTGAAGATTTTTTCCCCACCCCAGGTCTCGTCGTGGAAGATGCTGAGCAGCGGCTCCTGGCTCCAGCAGCTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACg                                                                                                                                                  >  3:181837/1‑149 (MQ=255)    ggTAATCACGGTGAAGATTTTTTCCCCACCCCAGGTCTCGTCGTGGAAGATGCTGAGCAGCGGCTCCTGGCTCCAGCAGCTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCa                                                                                                                                               <  3:231401/149‑1 (MQ=255)      tAATCACGGTGAAGATTTTTTCCCCACCCCAGGTCTCGTCGTGGAAGATGCTGAGCAGCGGCTCCTGGCTCCAGCAGCTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGc                                                                                                                                             <  5:256959/149‑1 (MQ=255)                   gATTTTTTCCCCACCCCAGGTCTCGTCGTGGAAGATGCTGAGCAGCGGCTCCTGGCTCCAGCAGCTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCCGGCt                                                                                                                                >  4:184115/1‑149 (MQ=255)                     ttttttCCCCACCCCAGGTCTCGTCGTGGAAGATGCTGAGCAGCGGCTCCTGGCTCCAGCAGCTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTc                                                                                                                               <  8:51815/148‑1 (MQ=255)                           ccccaccccaGGTCTCGTCGTGGAAGATGCTGAGCAGCGGCTCCTGGCTCCAGCAGCTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTCGTAAcc                                                                                                                         <  4:116209/148‑1 (MQ=255)                                            tcgtGGAAGATGCTGAGCAGCGGCTCCTGGCTCCAGCAGCTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATttcttc                                                                                                       <  3:184115/149‑1 (MQ=255)                                             gttcggcttggtcatacgcctgcgtacgctggacgagctgccgaacatccaggacgtgcaccagcaagtacgcagccagatcgacaacattcaggaagaaatgCGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATttcttc                                                                                                       >  6:271139‑M1/104‑148 (MQ=255)                                              gtGGAAGATGCTGAGCAGCGGCTCCTGGCTCCAGCAGCTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCt                                                                                                     <  6:30045/149‑1 (MQ=255)                                                        cTGAGCAGCGGCTCCTGGCTCCAGCAGCTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAAtgttgt                                                                                            <  2:190593/148‑1 (MQ=255)                                                        cTGAGCAGCGGCTCCTGGCTCCAGCAGCTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAAtgttgt                                                                                            <  4:198129/148‑1 (MQ=255)                                                        cTGAGCAGCGGCTCCTGGCTCCAGCAGCTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAATGTTGTc                                                                                           <  5:89159/149‑1 (MQ=255)                                                               gcGGCTCCTGGCTCCAGCAGCTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAATGTTGTCGATCTgg                                                                                    <  4:181837/149‑1 (MQ=255)                                                                         gCTCCAGCAGCTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCAGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAATGTTGTCGATATGGCTGCGTACtt                                                                          >  3:36105/1‑149 (MQ=255)                                                                           ggacgagctgccgaacatccaggacgtgcaccagcaagtacgcagccagatcgacaacattcaggaagaaatgCGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTcc                                                                                                      >  7:156952‑M1/74‑119 (MQ=255)                                                                           ggacgagctgccgaacatccaggacgtgcaccagcaagtacgcagccagatcgacaacattcaggaagaaatgCGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTcc                                                                                                      <  8:156952‑M1/46‑1 (MQ=255)                                                                              agcagcTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGATCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAATGTTGTCGATCTGGCTGCGTACTTGCTg                                                                      <  5:218338/148‑1 (MQ=255)                                                                              agcagcTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAATGTTGTCGATCTGGCTGCGTACTTGCTg                                                                      >  6:218338/1‑148 (MQ=255)                                                                                cagcTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAATGTTGTCGATCTGGCTGCGTACTTGCTGGTg                                                                   >  1:270279/1‑149 (MQ=255)                                                                                 agcTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAATGTTGTCGATCTGGCTGCGTAc                                                                            <  7:243569/139‑1 (MQ=255)                                                                                 agcTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAATGTTGTCGATCTGGCTGCGTAc                                                                            >  8:243569/1‑139 (MQ=255)                                                                                  gctgctCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAATGTTGTCGATCTGGCTGCGTACTTGCTGGTGCa                                                                 <  2:199391/149‑1 (MQ=255)                                                                                       tctTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAATGTTGTCGATCTGGCTGCGTACTTGCTGGTGCACGTc                                                             >  8:187938/1‑148 (MQ=255)                                                                                        ctTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAATGTTGTCGATCTGGCTGCGTACTTGCTGGTGCACGTCCt                                                           >  7:38312/1‑149 (MQ=255)                                                                                           gCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAAt                                                                                                 >  2:162092/1‑108 (MQ=255)                                                                                           gCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAAt                                                                                                 <  1:162092/108‑1 (MQ=255)                                                                                                  ggCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAATGTTGTCGATCTGGCTGCGTACTTGCTGGTGCACGTCCTGGATGTTCgg                                                 <  7:187938/149‑1 (MQ=255)                                                                                                               cGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAATGTTGTCGATCTGGCTGCGTACTTGCTGGTGCACGTCCTGGATGTTCGGCAGCTCGTCCAGc                                    <  8:38312/149‑1 (MQ=255)                                                                                                                                aGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAATGTTGTCGATCTGGCTGCGTACTTGCTGGTGCACGTCCTGGATGTTCGGCAGCTCGTCCAGCGTACGCAGGCGTATGAc                   >  8:75155/1‑149 (MQ=255)                                                                                                                                    acaGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAATGTTGTCGATCTGGCTGCGTACTTGCTGGTGCACGTCCTGGATGTTCGGCAGCTCGTCCAGCGTACGCAGGCGTATGACCAAg               >  2:12764/1‑149 (MQ=255)                                                                                                                                     caGACCTTAGGAGTACGCAAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAATGTTGTCGATCTGGCTGCGTACTTGCTGGTGCACGTCCTGGATGTTCGGCAGCTCGTCCAGCGTACGCAGGCGTATGACCAAGc              <  4:36105/149‑1 (MQ=255)                                                                                                                                     caGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAATGTTGTCGATCTGGCTGCGTACTTGCTGGTGCACGTCCTGGATGTTCGGCAGCTCGTCCAGCGTACGCAGGCGTATGACCAAGc              >  2:126143/1‑149 (MQ=255)                                                                                                                                                 gTACGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAATGTTGTCGATCTGGCTGCGTACTTGCTGGTGCACGTCCTGGATGTTCGGCAGCTCGTCCAGCGTACGCAGGCGTATGACCAAGCCGAACAACGGTg  <  7:75155/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                  GCGGGTAATCACGGTGAAGATTTTTTCCCCACCCCAGGTCTCGTCGTGGAAGATGCTGAGCAGCGGCTCCTGGCTCCAGCAGCTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAATGTTGTCGATCTGGCTGCGTACTTGCTGGTGCACGTCCTGGATGTTCGGCAGCTCGTCCAGCGTACGCAGGCGTATGACCAAGCCGAACAACGGTG  >  NC_002947/2992560‑2992852

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.