New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2992707 =	27 (0.640)	3 (0.080)	3/242	NT	10.1%	coding (366/870 nt)	PP_2616	hypothetical protein
	?	NC_002947	2992743 =	28 (0.710)					coding (330/870 nt)	PP_2616	hypothetical protein

TCGTGGAAGATGCTGAGCAGCGGCTCCTGGCTCCAGCAGCTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAATGTTGTCGATCTGGCTGCGTACTTGCTGGTGCACGTCCTGGATGTTCGGCAGCTCGTCCAGCGTACGCAGGCGTATGACCAAGCCGAACAACGGTGATGCGGCATCCAGCATC  >  NC_002947/2992603‑2992869                                                                                                                                             |                                                                                                                               tcgtGGAAGATGCTGAGCAGCGGCTCCTGGCTCCAGCAGCTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATttcttc                                                                                                                        <  3:184115/149‑1 (MQ=255)  gttcggcttggtcatacgcctgcgtacgctggacgagctgccgaacatccaggacgtgcaccagcaagtacgcagccagatcgacaacattcaggaagaaatgCGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATttcttc                                                                                                                        >  6:271139‑M1/104‑148 (MQ=255)   gtGGAAGATGCTGAGCAGCGGCTCCTGGCTCCAGCAGCTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCt                                                                                                                      <  6:30045/149‑1 (MQ=255)             cTGAGCAGCGGCTCCTGGCTCCAGCAGCTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAAtgttgt                                                                                                             <  4:198129/148‑1 (MQ=255)             cTGAGCAGCGGCTCCTGGCTCCAGCAGCTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAAtgttgt                                                                                                             <  2:190593/148‑1 (MQ=255)             cTGAGCAGCGGCTCCTGGCTCCAGCAGCTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAATGTTGTc                                                                                                            <  5:89159/149‑1 (MQ=255)                    gcGGCTCCTGGCTCCAGCAGCTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAATGTTGTCGATCTgg                                                                                                     <  4:181837/149‑1 (MQ=255)                              gCTCCAGCAGCTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCAGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAATGTTGTCGATATGGCTGCGTACtt                                                                                           >  3:36105/1‑149 (MQ=255)                                ggacgagctgccgaacatccaggacgtgcaccagcaagtacgcagccagatcgacaacattcaggaagaaatgCGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTcc                                                                                                                       <  8:156952‑M1/46‑1 (MQ=255)                                ggacgagctgccgaacatccaggacgtgcaccagcaagtacgcagccagatcgacaacattcaggaagaaatgCGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTcc                                                                                                                       >  7:156952‑M1/74‑119 (MQ=255)                                   agcagcTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGATCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAATGTTGTCGATCTGGCTGCGTACTTGCTg                                                                                       <  5:218338/148‑1 (MQ=255)                                   agcagcTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAATGTTGTCGATCTGGCTGCGTACTTGCTg                                                                                       >  6:218338/1‑148 (MQ=255)                                     cagcTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAATGTTGTCGATCTGGCTGCGTACTTGCTGGTg                                                                                    >  1:270279/1‑149 (MQ=255)                                      agcTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAATGTTGTCGATCTGGCTGCGTAc                                                                                             <  7:243569/139‑1 (MQ=255)                                      agcTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAATGTTGTCGATCTGGCTGCGTAc                                                                                             >  8:243569/1‑139 (MQ=255)                                       gctgctCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAATGTTGTCGATCTGGCTGCGTACTTGCTGGTGCa                                                                                  <  2:199391/149‑1 (MQ=255)                                            tctTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAATGTTGTCGATCTGGCTGCGTACTTGCTGGTGCACGTc                                                                              >  8:187938/1‑148 (MQ=255)                                             ctTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAATGTTGTCGATCTGGCTGCGTACTTGCTGGTGCACGTCCt                                                                            >  7:38312/1‑149 (MQ=255)                                                gCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAAt                                                                                                                  <  1:162092/108‑1 (MQ=255)                                                gCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAAt                                                                                                                  >  2:162092/1‑108 (MQ=255)                                                       ggCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAATGTTGTCGATCTGGCTGCGTACTTGCTGGTGCACGTCCTGGATGTTCgg                                                                  <  7:187938/149‑1 (MQ=255)                                                                    cGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAATGTTGTCGATCTGGCTGCGTACTTGCTGGTGCACGTCCTGGATGTTCGGCAGCTCGTCCAGc                                                     <  8:38312/149‑1 (MQ=255)                                                                                     aGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAATGTTGTCGATCTGGCTGCGTACTTGCTGGTGCACGTCCTGGATGTTCGGCAGCTCGTCCAGCGTACGCAGGCGTATGAc                                    >  8:75155/1‑149 (MQ=255)                                                                                         acaGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAATGTTGTCGATCTGGCTGCGTACTTGCTGGTGCACGTCCTGGATGTTCGGCAGCTCGTCCAGCGTACGCAGGCGTATGACCAAg                                >  2:12764/1‑149 (MQ=255)                                                                                          caGACCTTAGGAGTACGCAAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAATGTTGTCGATCTGGCTGCGTACTTGCTGGTGCACGTCCTGGATGTTCGGCAGCTCGTCCAGCGTACGCAGGCGTATGACCAAGc                               <  4:36105/149‑1 (MQ=255)                                                                                          caGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAATGTTGTCGATCTGGCTGCGTACTTGCTGGTGCACGTCCTGGATGTTCGGCAGCTCGTCCAGCGTACGCAGGCGTATGACCAAGc                               >  2:126143/1‑149 (MQ=255)                                                                                               ggaagaaatgcgccagcacggttacgagccggctcagttgctggcgCATTTCTTCCTGAATGTTGTCGATCTGGCTGCGTACTTGCTGGTGCACGTCCTGGATGTTCGGCAGCTCGTcc                                                        >  7:156952‑M2/47‑119 (MQ=255)                                                                                               ggaagaaatgcgccagcacggttacgagccggctcagttgctggcgCATTTCTTCCTGAATGTTGTCGATCTGGCTGCGTACTTGCTGGTGCACGTCCTGGATGTTCGGCAGCTCGTcc                                                        <  8:156952‑M2/73‑1 (MQ=255)                                                                                                gaagaaatgcgccagcacggttacgagccggctcagttgctggcgCATTTCTTCCTGAATGTTGTCGATCTGGCTGCGTACTTGCTGGTGCACGTCCTGGATGTTCGGCAGCTCGTCCAGCGTACGCAGGCGTATGACCAAGCCGaac                          >  6:271139‑M2/46‑148 (MQ=255)                                                                                                      gTACGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAATGTTGTCGATCTGGCTGCGTACTTGCTGGTGCACGTCCTGGATGTTCGGCAGCTCGTCCAGCGTACGCAGGCGTATGACCAAGCCGAACAACGGTg                   <  7:75155/149‑1 (MQ=255)                                                                                                                  cTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAATGTTGTCGATCTGGCTGCGTACTTGCTGGTGCACGTCCTGGATGTTCGGCAGCTCGTCCAGCGTACGCAGGCGTATGACCAAGCCGAACAACGGTGATGCGGCATCCa       <  1:12764/149‑1 (MQ=255)                                                                                                                    gAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAATGTTGTCGATCTGGCTGCGTACTTGCTGGTGCACGTCCTGGATGTTCGGCAGCTCGTCCAGCGTACGCAGGCGTATTACCAAGCCGAACACAGGTGATTCGGCATCCAg      >  3:169752/1‑148 (MQ=255)                                                                                                                    gAGCCGGCGCGTAACCGTGCTTGCTCATTTCTTCCTGAATGTTGTCGAGCTTGCTGCGTACTTGCTGGTGCACGTCCTGGATGTTCGGCAGCTCGTCCAGCGTACGCAGGCGTATGACCAAGCCGAACAACGGTGATGCGGCATCCAg      <  4:169752/148‑1 (MQ=255)                                                                                                                       ccGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAATGTTGTCGATCTGGCTGCGTACTTGCTGGTGCACGTCCTGGATGTTCGGCAGCTCGTCCAGCGTACGCAGGCGTATGACCAAGCCGAACAACGGTGATGCGGCATCCAGCATc  <  2:270279/149‑1 (MQ=255)                                                                                                                                             |                                                                                                                               TCGTGGAAGATGCTGAGCAGCGGCTCCTGGCTCCAGCAGCTGCTCTTGCCCCAGGGCCGCTCCATAACGGCCTCGTCTATGAACAGGCACAGACCGTAGGAGTACGCCAGCAACTGAGCCGGCTCGTAACCGTGCTGGCGCATTTCTTCCTGAATGTTGTCGATCTGGCTGCGTACTTGCTGGTGCACGTCCTGGATGTTCGGCAGCTCGTCCAGCGTACGCAGGCGTATGACCAAGCCGAACAACGGTGATGCGGCATCCAGCATC  >  NC_002947/2992603‑2992869

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.