New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3201301 =	47 (1.110)	3 (0.080)	3/242	NT	6.9%	coding (629/1368 nt)	PP_2808	oxidoreductase
	?	NC_002947	3201337 =	37 (0.930)					coding (665/1368 nt)	PP_2808	oxidoreductase

CGAGCCGCTTCGTCGAAGGTGCCGAGATGCGTGCGCGGGGCATCCCCCCTGCGTTTCTGTTCGCCGCCGAGCAATGTGGCGGCACCTTGAATCCAGGGAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGCCGTGCAACCGCCCCGGT‑GATGGTGCTGGCAACCAACGCCTATACCCCGCAGCTGGGGGTGTTGCGCAACAAG  >  NC_002947/3201160‑3201446                                                                                                                                               |                                                                                                                                                    gtttcgattgccgacacccgaatcgccgcgaccttgttgcgcaacacccccagctgcggggtataggcgttggttgccagcaccatcaccggggcggttgcacggccatgggcagtcttgcaggtaatgaccggcccttcgcTGAAGct                                                                                                                                               <  1:250035‑M1/7‑1 (MQ=255)  tttcgattgccgacacccgaatcgccgcgaccttgttgcgcaacacccccagctgcggggtataggcgttggttgccagcaccatcaccggggcggttgcccggccatgggcagtcttgcaggtaatgaccggcccttcgcTGaagat                                                                                                                                               <  2:233609‑M1/7‑3 (MQ=255)     ccGCTTCGTCGATGGTGCCGAGATGCGTGCGCGGGGCATCCCCGCTGCGTTTCTGTTCGCCGCCGAGCAATGTGGCGGCACCTTGAATCCAGGGAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCAGCGAGGCGGGGGTGAAGCTCTAc                                                                                                                                           <  2:21260/148‑1 (MQ=255)            gtcgAAGGTGCCGAGATGCGTGCGCGGGGCATCCCCCCTGCGTTTCTGTTCGCCGCCGAGCAATGTGGCGGCACCTTGAATCCAGGGAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAacgcac                                                                                                                                  >  5:90608/1‑149 (MQ=255)                     gCCGAGATGCGTGCGCGGGGCATCCCCCCTGCGTTTCTGTTCGCCGCCGAGCAATGTGGCGGCACCTTGAATCCAGGGAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTg                                                                                                                                                    <  8:121346/123‑1 (MQ=255)                     gCCGAGATGCGTGCGCGGGGCATCCCCCCTGCGTTTCTGTTCGCCGCCGAGCAATGTGGCGGCACCTTGAATCCAGGGAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTg                                                                                                                                                    >  7:121346/1‑123 (MQ=255)                       cGAGATGCGTGCGCGGGGCATCCCCCCTGCGTTTCTGTTCGCCGCCGAGCAATGTGGCGGCACCTTGAATCCAGGGAAGTACATCGGCGGCCTCCGGCGCG‑CGGCGATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGa                                                                                                                       <  5:206531/149‑1 (MQ=255)                        gagaTGCGTGCGCGGGGCATCCCCCCTGCGTTTCTGTTCGCCGCCGAGCAATGTGGCGGCACCTTGAATCCAGGGAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAg                                                                                                                      >  4:52590/1‑149 (MQ=255)                              cgtgcgCGGGGCATCCCCCCTGCGTTTCTGTTCGCCGCCGAGCAATGTGGCGGCACCTTGAATCCAGGGAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAg                                                                                                                >  2:209138/1‑149 (MQ=255)                               gtgcgCGGGGCATCCCCCCTGCGTTTCTGTTCGCCGCCGAGCAATGTGGCGGCACCTTGAATCCAGGGAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGc                                                                                                               >  4:179952/1‑149 (MQ=255)                               gtgcgCGGGGCATCCCCCCTGCGTTTCTGTTCGCCGCCGAGCAATGTGGCGGCACCTTGAATCCAGGGAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGc                                                                                                               <  6:90608/149‑1 (MQ=255)                                tgcgCGGGGCATCCCCCCTGCGTTTCTGTTGGCCGCCGAGCAATGTGGCGGCACCTTGAATCCAGGGAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGc                                                                                                                          >  1:23318/1‑137 (MQ=255)                                tgcgCGGGGCATCCCCCCTGCGTTTCTGTTCGCCGCCGAGCAATGTGGCGGCACCTTGAATCCCGGGAAGTACATCGGCGGCCTCCGGCGCGCCGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGc                                                                                                               <  1:209674/149‑1 (MQ=255)                                tgcgCGGGGCATCCCCCCTGCGTTTCTGTTCGCCGCCGAGCAATGTGGCGGCACCTTGAATCCAGGGAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGc                                                                                                                          <  2:23318/137‑1 (MQ=255)                                   gcgGGGCATCCCCCCTGCGTTTCTGTTCGCCGCCGAGCAATGTGGCGGCACCTTGAATCCAGGGAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAg                                                                                                           <  1:98096/149‑1 (MQ=255)                                    gttgcgcaacaccgccagctgcggggtataggcgttggttgccagcaccatcaccggggcggttgcacggccttgggcagtcttgcaggtaatgaccggcccttcgcTGAAGCTCTAC‑GAACGCACGCGGTTGCTGAGCTTCAGCGaa                                                                                                            >  2:56583‑M1/108‑148 (MQ=255)                                          aTCCCCCCTGCGTTGCTGTTCGCCGCCGAGCAATGTGGCGGCACCTTGAATCCAGGGAAGTACCTCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGt                                                                                                    <  7:176085/149‑1 (MQ=255)                                            ccccccTGCGTTTCTGTTCGCCGCCGAGCAATGTGGCGGCACCTTGAATCCAGGGAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCa                                                                                                  >  4:1613/1‑149 (MQ=255)                                                    cGTTTCTGTTCGCCGCCGAGCAATGTGGCGGCACCTTGAATCCAGGGAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCt                                                                                            <  6:62172/147‑1 (MQ=255)                                                     gTTTCTGTTCGCCGCCGAGCAATGTGGCGGCACCTTGAATCCAGGGAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCa                                                                                         <  1:106205/149‑1 (MQ=255)                                                            ttCGCCGGCGTGCAATGTGGCGGCAACTTGTATCCCTGGAAGTACCTCGGCGGCCTCCGGCGGG‑GGGCCATCGTGGCGGGGGTGAATCTCTACAGAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTg                                                                                   <  1:209138/149‑1 (MQ=255)                                                                ccgccgAGCAATGTGGCGGCACCTTGAATCCAGGGAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCAt                                                                              >  1:233609/1‑149 (MQ=255)                                                                 cgccgAGCAATGTGGCGGCACCTTGAATCCAGGGAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GACCGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATg                                                                             >  4:261711/1‑149 (MQ=255)                                                                 cgccgAGCAATGTGGCGGCACCTTGAATCCAGGGAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCt                                                                                                                         <  3:142458/105‑1 (MQ=255)                                                                 cgccgAGCAATGTGGCGGCACCTTGAATCCAGGGAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCt                                                                                                                         >  4:142458/1‑105 (MQ=255)                                                                 cgccgAGCAATGTGGCGGCACCTTGAATCCAGGGAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCa                                                                                                                 <  7:15275/113‑1 (MQ=255)                                                                 cgccgAGCAATGTGGCGGCACCTTGAATCCAGGGAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCa                                                                                                                 >  8:15275/1‑113 (MQ=255)                                                                  ggcgttggttgccagcaccatcaccggggcggttgcacggccatgggcagtcttgcaggtaatgaccggcccttcgcTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAg                                                                                                                <  7:9485‑M1/37‑1 (MQ=255)                                                                  ggcgttggttgccagcaccatcaccggggcggttgcacggccatgggcagtcttgcaggtaatgaccggcccttcgcTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAg                                                                                                                >  8:9485‑M1/78‑114 (MQ=255)                                                                  gccgAGCAATGTGGCGGCACCTTGAATCCAGGGAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATgg                                                                            <  3:52590/149‑1 (MQ=255)                                                                     gAGCAATGTGGCGGCACCTTGAATCCAGGGAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGCCg                                                                         >  6:215842/1‑149 (MQ=255)                                                                      aGCAATGTGGCGGCACCTTGAATCCAGGGAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGCCGt                                                                        >  1:49990/1‑149 (MQ=255)                                                                              ggcggcACCTTGAATCCAGGGAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGCCGTGCAACCGc                                                                >  7:170652/1‑149 (MQ=255)                                                                                  gcACCTTGAATCCAGGGAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCAGGTCATTACCTGCAAGACTGCACATGGCCGTGCAACAGcccag                                                            >  6:14819/1‑147 (MQ=255)                                                                                     ccTTGAATCCAGGGAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGCCGTGCAACCGCCCCGGt                                                          >  2:153549/1‑148 (MQ=255)                                                                                      cTTGAATCCAGGGAAGTACATCGGCGGCCTCAGGCGCG‑AGGCAATCGAGGCGGGGGTGAAGCTATAC‑GAACGCACGCCGTTGCTGAGATTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGACGTGCAACCGACCCGGtt                                                         >  4:12128/1‑147 (MQ=255)                                                                                        tGAATCCAGGGAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGCCGTGCAACCGCCCCGGT‑GATg                                                     >  8:227163/1‑149 (MQ=255)                                                                                              cAGGGAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGCCGTGCAACCGCCCCGGT‑GATGGTGCTg                                               <  5:215842/149‑1 (MQ=255)                                                                                               aGGGAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGCCGTGCAACCGCCCCGGT‑GATGGTGCTgg                                              >  1:136179/1‑149 (MQ=255)                                                                                                gggAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTAATTACCTGCAAGACTGCCCATGGCCGTGCAACCGCCCCGGT‑GATGGTGCTgg                                              >  7:167789/1‑148 (MQ=255)                                                                                                 ggAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGCCGTGCAACCGccc                                                              >  1:188932/1‑132 (MQ=255)                                                                                                 ggAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGCCGTGCAACCGccc                                                              <  2:188932/132‑1 (MQ=255)                                                                                                      tACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGCCGTGCAACCGCCCCGGT‑GATGGTGCTGGcaaccaa                                       <  2:49990/149‑1 (MQ=255)                                                                                                        cATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGCCGTGCAACCGCCCCGGT‑GAt                                                      >  4:199922/1‑132 (MQ=255)                                                                                                        cATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGCCGTGCAACCGCCCCGGT‑GAt                                                      <  3:199922/132‑1 (MQ=255)                                                                                                         aTCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGCCGTGCAACCGCCCCGGT‑GATGGTCCTGGCAACCAACGc                                    <  7:227163/149‑1 (MQ=255)                                                                                                                  cTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGCCGTGCAACCGCCCCGGTGGATGGTGCTGGCAACCAACGCCTATAccc                            <  1:153549/149‑1 (MQ=255)                                                                                                                           g‑cgGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGCCGTGCAACCGCCCCGGT‑GATGGTGCTGGCAACCAACGCCTATACCCCGCAGCTggg                  <  5:14819/149‑1 (MQ=255)                                                                                                                              ggCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGCCGTGCAACCGCCCCGGT‑GATGGTGCTGGCAACCAACGCCTATACCCCGCAGCTggggg                <  5:6590/149‑1 (MQ=255)                                                                                                                                  atgtaGGCGGGGGTGAAGCTCTAC‑GAACGCACTCCTTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGCCGTGCAACCGCCCCGGT‑GATGGTGCTGGGAACCAACGCCTATACCCCGCAGCTGTGGGTGtt            <  3:12128/145‑1 (MQ=255)                                                                                                                                  aTCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGCCGTGCAACCGCCCCGGT‑GATGGTGCTGGCAACCAACGCCTATACCCCGCAGCTGGGGGTGtt            <  3:179952/149‑1 (MQ=255)                                                                                                                                   tCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGCCGTGCAACCGCCCCGGT‑GATGGTGCTGGCAACCAACGCCTATACCCCGCAGCTGGGGGTGTTg           >  1:968/1‑149 (MQ=255)                                                                                                                                      aGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGCCGTGCAACCGCCCCGGT‑GATGGTGCTGGCAACCAACGCCTATACCCCGCAGCTGGGGGTGTTgcg         >  2:250035/1‑148 (MQ=255)                                                                                                                                       ggCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGCCGTGCAACCGCCCCGGT‑GATGGTGCTGGCAACCAACGCCTATACCCCGCAGCTGGGGGTGTTGCGca       <  7:208376/149‑1 (MQ=255)                                                                                                                                            gggTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGCCGTGCAACCGCCCCGGT‑GATGGTGCTGGCAACCAACGCCTATACCCCGCAGCTGGGGGTGTTGCGCAACAAg  <  6:98797/149‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                    CGAGCCGCTTCGTCGAAGGTGCCGAGATGCGTGCGCGGGGCATCCCCCCTGCGTTTCTGTTCGCCGCCGAGCAATGTGGCGGCACCTTGAATCCAGGGAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGCCGTGCAACCGCCCCGGT‑GATGGTGCTGGCAACCAACGCCTATACCCCGCAGCTGGGGGTGTTGCGCAACAAG  >  NC_002947/3201160‑3201446

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.