New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3201301 =	47 (1.110)	3 (0.080)	3/242	NT	6.9%	coding (629/1368 nt)	PP_2808	oxidoreductase
	?	NC_002947	3201337 =	37 (0.930)					coding (665/1368 nt)	PP_2808	oxidoreductase

CGTGCGCGGGGCATCCCCCCTGCGTTTCTGTTCGCCGCCGAGCAATGTGGCGGCACCTTGAATCCAGGGAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGCCGTGCAACCGCCCCGGT‑GATGGTGCTGGCAACCAACGCCTATACCCCGCAGCTGGGGGTGTTGCGCAACAAGGTCGCGGCGATTCGGGTGTCGGCAATCGAAAC  >  NC_002947/3201189‑3201478                                                                                                                                                       |                                                                                                                                               cgtgcgCGGGGCATCCCCCCTGCGTTTCTGTTCGCCGCCGAGCAATGTGGCGGCACCTTGAATCCAGGGAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAg                                                                                                                                                >  2:209138/1‑149 (MQ=255)  gtgcgCGGGGCATCCCCCCTGCGTTTCTGTTCGCCGCCGAGCAATGTGGCGGCACCTTGAATCCAGGGAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGc                                                                                                                                               <  6:90608/149‑1 (MQ=255)  gtgcgCGGGGCATCCCCCCTGCGTTTCTGTTCGCCGCCGAGCAATGTGGCGGCACCTTGAATCCAGGGAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGc                                                                                                                                               >  4:179952/1‑149 (MQ=255)   tgcgCGGGGCATCCCCCCTGCGTTTCTGTTCGCCGCCGAGCAATGTGGCGGCACCTTGAATCCCGGGAAGTACATCGGCGGCCTCCGGCGCGCCGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGc                                                                                                                                               <  1:209674/149‑1 (MQ=255)      gcgGGGCATCCCCCCTGCGTTTCTGTTCGCCGCCGAGCAATGTGGCGGCACCTTGAATCCAGGGAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAg                                                                                                                                           <  1:98096/149‑1 (MQ=255)       gttgcgcaacaccgccagctgcggggtataggcgttggttgccagcaccatcaccggggcggttgcacggccttgggcagtcttgcaggtaatgaccggcccttcgcTGAAGCTCTAC‑GAACGCACGCGGTTGCTGAGCTTCAGCGaa                                                                                                                                            >  2:56583‑M1/108‑148 (MQ=255)             aTCCCCCCTGCGTTGCTGTTCGCCGCCGAGCAATGTGGCGGCACCTTGAATCCAGGGAAGTACCTCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGt                                                                                                                                    <  7:176085/149‑1 (MQ=255)               ccccccTGCGTTTCTGTTCGCCGCCGAGCAATGTGGCGGCACCTTGAATCCAGGGAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCa                                                                                                                                  >  4:1613/1‑149 (MQ=255)                       cGTTTCTGTTCGCCGCCGAGCAATGTGGCGGCACCTTGAATCCAGGGAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCt                                                                                                                            <  6:62172/147‑1 (MQ=255)                        gTTTCTGTTCGCCGCCGAGCAATGTGGCGGCACCTTGAATCCAGGGAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCa                                                                                                                         <  1:106205/149‑1 (MQ=255)                               ttCGCCGGCGTGCAATGTGGCGGCAACTTGTATCCCTGGAAGTACCTCGGCGGCCTCCGGCGGG‑GGGCCATCGTGGCGGGGGTGAATCTCTACAGAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTg                                                                                                                   <  1:209138/149‑1 (MQ=255)                                   ccgccgAGCAATGTGGCGGCACCTTGAATCCAGGGAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCAt                                                                                                              >  1:233609/1‑149 (MQ=255)                                    cgccgAGCAATGTGGCGGCACCTTGAATCCAGGGAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GACCGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATg                                                                                                             >  4:261711/1‑149 (MQ=255)                                     ggcgttggttgccagcaccatcaccggggcggttgcacggccatgggcagtcttgcaggtaatgaccggcccttcgcTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAg                                                                                                                                                <  7:9485‑M1/37‑1 (MQ=255)                                     ggcgttggttgccagcaccatcaccggggcggttgcacggccatgggcagtcttgcaggtaatgaccggcccttcgcTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAg                                                                                                                                                >  8:9485‑M1/78‑114 (MQ=255)                                     gccgAGCAATGTGGCGGCACCTTGAATCCAGGGAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATgg                                                                                                            <  3:52590/149‑1 (MQ=255)                                        gAGCAATGTGGCGGCACCTTGAATCCAGGGAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGCCg                                                                                                         >  6:215842/1‑149 (MQ=255)                                         aGCAATGTGGCGGCACCTTGAATCCAGGGAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGCCGt                                                                                                        >  1:49990/1‑149 (MQ=255)                                                 ggcggcACCTTGAATCCAGGGAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGCCGTGCAACCGc                                                                                                >  7:170652/1‑149 (MQ=255)                                                     gcACCTTGAATCCAGGGAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCAGGTCATTACCTGCAAGACTGCACATGGCCGTGCAACAGcccag                                                                                            >  6:14819/1‑147 (MQ=255)                                                        ccTTGAATCCAGGGAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGCCGTGCAACCGCCCCGGt                                                                                          >  2:153549/1‑148 (MQ=255)                                                         cTTGAATCCAGGGAAGTACATCGGCGGCCTCAGGCGCG‑AGGCAATCGAGGCGGGGGTGAAGCTATAC‑GAACGCACGCCGTTGCTGAGATTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGACGTGCAACCGACCCGGtt                                                                                         >  4:12128/1‑147 (MQ=255)                                                           tGAATCCAGGGAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGCCGTGCAACCGCCCCGGT‑GATg                                                                                     >  8:227163/1‑149 (MQ=255)                                                                 cAGGGAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGCCGTGCAACCGCCCCGGT‑GATGGTGCTg                                                                               <  5:215842/149‑1 (MQ=255)                                                                  aGGGAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGCCGTGCAACCGCCCCGGT‑GATGGTGCTgg                                                                              >  1:136179/1‑149 (MQ=255)                                                                   gggAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTAATTACCTGCAAGACTGCCCATGGCCGTGCAACCGCCCCGGT‑GATGGTGCTgg                                                                              >  7:167789/1‑148 (MQ=255)                                                                    ggAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGCCGTGCAACCGccc                                                                                              <  2:188932/132‑1 (MQ=255)                                                                    ggAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGCCGTGCAACCGccc                                                                                              >  1:188932/1‑132 (MQ=255)                                                                         tACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGCCGTGCAACCGCCCCGGT‑GATGGTGCTGGcaaccaa                                                                       <  2:49990/149‑1 (MQ=255)                                                                           cATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGCCGTGCAACCGCCCCGGT‑GAt                                                                                      <  3:199922/132‑1 (MQ=255)                                                                           cATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGCCGTGCAACCGCCCCGGT‑GAt                                                                                      >  4:199922/1‑132 (MQ=255)                                                                            aTCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGCCGTGCAACCGCCCCGGT‑GATGGTCCTGGCAACCAACGc                                                                    <  7:227163/149‑1 (MQ=255)                                                                                     cTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGCCGTGCAACCGCCCCGGTGGATGGTGCTGGCAACCAACGCCTATAccc                                                            <  1:153549/149‑1 (MQ=255)                                                                                              g‑cgGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGCCGTGCAACCGCCCCGGT‑GATGGTGCTGGCAACCAACGCCTATACCCCGCAGCTggg                                                  <  5:14819/149‑1 (MQ=255)                                                                                                 ggCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGCCGTGCAACCGCCCCGGT‑GATGGTGCTGGCAACCAACGCCTATACCCCGCAGCTggggg                                                <  5:6590/149‑1 (MQ=255)                                                                                                     atgtaGGCGGGGGTGAAGCTCTAC‑GAACGCACTCCTTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGCCGTGCAACCGCCCCGGT‑GATGGTGCTGGGAACCAACGCCTATACCCCGCAGCTGTGGGTGtt                                            <  3:12128/145‑1 (MQ=255)                                                                                                     aTCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGCCGTGCAACCGCCCCGGT‑GATGGTGCTGGCAACCAACGCCTATACCCCGCAGCTGGGGGTGtt                                            <  3:179952/149‑1 (MQ=255)                                                                                                      tCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGCCGTGCAACCGCCCCGGT‑GATGGTGCTGGCAACCAACGCCTATACCCCGCAGCTGGGGGTGTTg                                           >  1:968/1‑149 (MQ=255)                                                                                                         aGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGCCGTGCAACCGCCCCGGT‑GATGGTGCTGGCAACCAACGCCTATACCCCGCAGCTGGGGGTGTTgcg                                         >  2:250035/1‑148 (MQ=255)                                                                                                          ggCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGCCGTGCAACCGCCCCGGT‑GATGGTGCTGGCAACCAACGCCTATACCCCGCAGCTGGGGGTGTTGCGca                                       <  7:208376/149‑1 (MQ=255)                                                                                                              ttcgctgaagctcagcaaccgcgtgcgttcgtagagcttcaGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCAAGGCCGTGCAACCGCCCCGGT‑GATGGTGCTGGCAACCAACGCCTATACCCCGCAGCTGGCGGTGTTGCGcaac                                     >  2:56583‑M2/42‑148 (MQ=255)                                                                                                               gggTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGCCGTGCAACCGCCCCGGT‑GATGGTGCTGGCAACCAACGCCTATACCCCGCAGCTGGGGGTGTTGCGCAACAAg                                  <  6:98797/149‑1 (MQ=255)                                                                                                                  ctgaagctcagcaacggcgtgcgttcgtagagcttcaGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGCCGTGCAACCGCCCCGGT‑GATGGTGCTGGCAACCAACGcc                                                                   >  8:9485‑M2/38‑114 (MQ=255)                                                                                                                  ctgaagctcagcaacggcgtgcgttcgtagagcttcaGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGCCGTGCAACCGCCCCGGT‑GATGGTGCTGGCAACCAACGcc                                                                   <  7:9485‑M2/77‑1 (MQ=255)                                                                                                                    AAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGCTCATTACCTGCAAGACTGCCCATGGCCGTGCAACCGCCCCGGT‑GAGGGTGCTGGCAACCACAGCCGATACCCCGCCGCTGGGGGTGTTGCGCCACAAGGTcgc                             <  8:183425‑M1/149‑1 (MQ=255)                                                                                                                            c‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGCCGTGCAACCGCCCCGGT‑GATGGTGCTGGCAACCAACGCCTATACCCCGCAGCTGGGGGTGTTGCGCAACAAGGTCGCGGCGATTc                     >  3:196263/1‑149 (MQ=255)                                                                                                                                 cgcacgcCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGCCGTGCAACCGCCCCGGT‑GATGGTGCTGGCAACCAACGCCTATACCCCGCAGCTGGGGGTGTTGCGCAACAAGGTCGCGGCGATTCGGgt                 <  8:170652/149‑1 (MQ=255)                                                                                                                                 cgcacgcCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGCCGTGCAACCGCCCCGGT‑GATGGTGCTGGCAACCAACGCCTATACCCCGCAGCTGGGGGTGTTGCGCAACAAGGTCGCGGCGATTCGGgt                 <  4:196263/149‑1 (MQ=255)                                                                                                                                                atcttcaGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGCCGGGCAACCGCCCCGGT‑GATGGTGCTGGCAACCAACGCCTATACCCCGCAGCTGGGGGTGTTGCGCAACAAGGTCGCGGCGATTCGGGTGTCGGCAATCGaaa   <  2:233609‑M2/141‑1 (MQ=255)                                                                                                                                                agcttcaGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGCCGTGCAACCGCCCCGGT‑GATGGTGCTGGCAACCAACGCCTATACCCCGCAGCTGGGGGTGTTGCGCAACAAGGTCGCGGCGATTCGGGTGTCGGCAATCGAAAc  <  1:250035‑M2/142‑1 (MQ=255)                                                                                                                                                       |                                                                                                                                               CGTGCGCGGGGCATCCCCCCTGCGTTTCTGTTCGCCGCCGAGCAATGTGGCGGCACCTTGAATCCAGGGAAGTACATCGGCGGCCTCCGGCGCG‑CGGCCATCGAGGCGGGGGTGAAGCTCTAC‑GAACGCACGCCGTTGCTGAGCTTCAGCGAAGGGCCGGTCATTACCTGCAAGACTGCCCATGGCCGTGCAACCGCCCCGGT‑GATGGTGCTGGCAACCAACGCCTATACCCCGCAGCTGGGGGTGTTGCGCAACAAGGTCGCGGCGATTCGGGTGTCGGCAATCGAAAC  >  NC_002947/3201189‑3201478

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.