New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3528043	44 (1.040)	4 (0.100)	4/244	NT	8.3%	coding (1254/1419 nt)	imuB	DNA repair DNA linked protein
	?	NC_002947	= 3528091	47 (1.180)					coding (1302/1419 nt)	imuB	DNA repair DNA linked protein

AAGGGGCTTGGCGCAGCCGCCGATCACCGCCCCGAATGCGCCTGGCATTTGGCGGAGCAGGGTGCCCAAGGCAACATGCCGGTTGCACCGGGCAGCCGCCCGGGGTGGCTGTTGT‑CGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTG  >  NC_002947/3527900‑3528190                                                                                                                                                 |                                                                                                                                                    aaGGGGCTTGGCGCAGCCGCCGATCACCGCCCCGAATGCGCCTGGCATTTGGCGGAGCAGGGTGCCCAAGGCAACATGCCGGTTGCACCGGGCAGCCGCCCGGGGTGGCTGTTGT‑CGGCACCGATCGCGCTGGATGACACCGCCTAc                                                                                                                                                  >  3:121367/1‑147 (MQ=255)     ggCTTGGCGCAGCCGCCGATCACCGCCCCGAATGCGCCTGGCATTTGGCGGAGCAGGGTGCCCAAGGCAACATGCCGGTTGCACCGGGCAGCCGCCCGGGGTGGCTGTTGT‑CGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTg                                                                                                                                            <  3:2136/149‑1 (MQ=255)                           ccGCCCCGAATGCGCCTGGCATTTGGCGGAGCAGGGTGCCCAAGGCAACATGCCGGTTGCACCGGGCAGCCGCCCGGGGTGGCTGTTGT‑CGGCACCGATCGCGCTGGATGACGCCGCCatcccaccaacctgattcgatgcgttcggca                                                                                                                      >  3:17946‑M1/1‑118 (MQ=255)                           ccGCCCCGAATGCGCCTGGCATTTGGCGGAGCAGGGTGCCCAAGGCAACATGCCGGTTGCACCGGGCAGCCGCCCGGGGTGGCTGTTGT‑CGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATc                                                                                                                       >  8:112819/1‑148 (MQ=255)                               cccGAATGCGCCTGGCATTTGGCGGAGCAGGGTGCCCAGGGCAACATGCCGGTTGCACCGGGCAGCCGCCCGGGGTGGCTGTTGT‑CGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATc                                                                                                                  <  4:11293/149‑1 (MQ=255)                               cccGAATGCGCCTGGCATTTGGCGGAGCAGGGTGCCCAAGGCAACATGCCGGTTGCACCGGGCAGCCGCCCGGGGTGGCTGTTGT‑CGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATc                                                                                                                  <  3:13351/149‑1 (MQ=255)                                ccGAATGCGCCTGGCATTTGGCGGAGCAGGGTGCCCAAGGCAACATGCCGGTTGCACCGGGCAGCCGCCCGGGGTGGCTGTTGT‑CGGTACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAAt                                                                                                                   >  7:208905/1‑147 (MQ=255)                                        gcCTGGCATTTGGCGGAGCAGGGTGCCCAAGGCAACATGCCGGTTGCACCGGGCAGCCGCCCGGGGTGGCTGTTGT‑CGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTtggtg                                                                                                         >  6:60209/1‑149 (MQ=255)                                                tttGGCGGAGCAGGGTGCCCAAGGCAACATGCCGGTTGCACCGGGCAGCCGCCCGGGGTGGCTGTTGT‑CGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATggcg                                                                                                 <  6:88992‑M2/149‑5 (MQ=255)                                                    gCGGAGCAGGGTGCCCAAGGCAACATGCCGGTTGCACCGGGCAGCCGCCCGGGGTGGCTGTTGT‑CGGCACCGATCGCGCTGGATGACGCCGCCatcccaccaacctgattcgatgcgttcggcatagccctgcacctggtaggcggcgt                                                                                             <  4:17946‑M1/149‑57 (MQ=255)                                                     cGGAGCAGGGTGCCCAAGGCAACATGCCGGTTGCACCGGGCAGCCGCCCGGGGTGGCTGTTGT‑CGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGAt                                                                                            >  5:11991/1‑149 (MQ=255)                                                              gTGCCCAAGGCAACATGCCGGTTGCACCGGGCAGCCGCCCGGGGTGGCTGTTGT‑CGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGa                                                                                                      >  8:206653/1‑130 (MQ=255)                                                              gTGCCCAAGGCAACATGCCGGTTGCACCGGGCAGCCGCCCGGGGTGGCTGTTGT‑CGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGa                                                                                                      <  7:206653/130‑1 (MQ=255)                                                                 cccAAGGCAACATGCCGGTTGCACCGGGCAGCCGCCCGGGGTGGCTGTTGT‑CGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGac                                                                                >  1:138453/1‑149 (MQ=255)                                                                  ccAAGGCAACATGCCGGTTGCACCGGGCAGCCGCCCGGGGTGGCTGTTGTGCGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGac                                                                                >  1:202550/1‑149 (MQ=255)                                                                  ccAAGGCAACATGCCGGTTGCACCGGGCAGCCGCCCGGGGTGGCTGTTGT‑CGGCACCGATCGCGCTGGATGACGCCGCCatcccaccaacctgattcgatgcgttcggcatagccctgcacctggtaggcggcgtcatcc                                                                                        <  2:21299‑M1/140‑62 (MQ=255)                                                                  ccAAGGCAACATGCCGGTTGCACCGGGCAGCCGCCCGGGGTGGCTGTTGT‑CGGCACCGATCGCGCTGGATGACGCCGCCatcccaccaacctgattcgatgcgttcggcatagccctgcacctggtaggcggcgtcatcc                                                                                        >  1:21299‑M1/1‑79 (MQ=255)                                                                  ccAAGGCAACATGCCGGTTGCACCGGGCAGCCGCCCGGGGTGGCTGTTGT‑CGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGac                                                                                >  4:27787/1‑148 (MQ=255)                                                                   cAAGGCAACATGCCGGTTGCACCGGGCAGCCGCCCGGGGTGGCTGTTGT‑CGGTACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGacta                                                                              <  8:208905/149‑1 (MQ=255)                                                                   cAAGGCAACATGCCGGTTGCACCGGGCAGCCGCCCGGGGTGGCTGTTGT‑CGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTACAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGacta                                                                              >  4:222710/1‑149 (MQ=255)                                                                    aaGGCAACATGCCGGTTGCACCGGGCAGCCGCCCGGGGTGGCTGTTGT‑CGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGactac                                                                             >  1:5400/1‑149 (MQ=255)                                                                       gCAACATGCCGGTTGCACCGGGCAGCCGCCCGGGGTGGCTGTTGT‑CGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACtactac                                                                          >  4:113686/1‑149 (MQ=255)                                                                             tGCCGGTTGCACCGGGCAGCCGCCCGGGGTGGCTGTTGT‑CGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATc                                                                    <  2:40933/149‑1 (MQ=255)                                                                                     gCACCGGGCAGCCGCCCGGGGTGGCTGTTGT‑CGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAAccc                                                             <  6:11991/148‑1 (MQ=255)                                                                                      cACCGGGCAGCCGCCCGGGGTGGCTGTTGT‑CGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGt                                                           <  5:60209/149‑1 (MQ=255)                                                                                      cACCGGGCAGCCGCCCGGGGTGGCTGTTGT‑CGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGt                                                           <  3:27787/149‑1 (MQ=255)                                                                                       aCCGGGCAGCCGCCCGGGGTGGCTGTTGT‑CGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCa                                                                                                                                          <  8:183327/69‑1 (MQ=255)                                                                                       aCCGGGCAGCCGCCCGGGGTGGCTGTTGT‑CGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCa                                                                                                                                          >  7:183327/1‑69 (MQ=255)                                                                                        ccGGGCAGCCGCCCGGGGTGGCTGTTGT‑CGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGa                                                         >  2:204179/1‑149 (MQ=255)                                                                                                ccgccCGGGGTGGCTGTTGT‑CGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGac                                                                                <  3:69432/118‑1 (MQ=255)                                                                                                ccgccCGGGGTGGCTGTTGT‑CGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGac                                                                                >  4:69432/1‑118 (MQ=255)                                                                                                   ccccGGGCGGCTGTTGT‑CGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGcgcg                                              >  7:2294/1‑149 (MQ=255)                                                                                                    ccGGGGTGGCTGTTGT‑CGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCgg                                             >  3:15514/1‑149 (MQ=255)                                                                                                        ggTGGCTGTTGT‑CGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGTGATGGCGGCGAAGTGCGTCGCGACTACTACCGCATCACAACCCGAGACGGCCTGCGCGGCTgg                                         >  3:200035/1‑149 (MQ=255)                                                                                                         gTGGCTGTTGT‑CGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTACAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTggg                                        <  3:222710/149‑1 (MQ=255)                                                                                                              tgttgt‑CGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTAc                                   >  6:44285/1‑149 (MQ=255)                                                                                                               gttgt‑CGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTAcc                                  >  1:7753/1‑149 (MQ=255)                                                                                                                      ggCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGAc                             <  2:7753/148‑1 (MQ=255)                                                                                                                        cACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTg                          <  2:5400/149‑1 (MQ=255)                                                                                                                         aCCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGa                         <  4:15514/149‑1 (MQ=255)                                                                                                                         aCCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGa                         <  5:44285/149‑1 (MQ=255)                                                                                                                          ccGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTgcgc                                               >  5:56784/1‑126 (MQ=255)                                                                                                                          ccGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTgcgc                                               <  6:56784/126‑1 (MQ=255)                                                                                                                           cGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGc                       >  5:78889/1‑149 (MQ=255)                                                                                                                             aTCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGc                       >  2:74236/1‑147 (MQ=255)                                                                                                                             aTCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCa                     <  7:112819/149‑1 (MQ=255)                                                                                                                             aTCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCa                     <  8:2294/149‑1 (MQ=255)                                                                                                                                 cgcTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGcc                 >  2:24695/1‑149 (MQ=255)                                                                                                                                     ggATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATggcggcgtcatccagcgcgatcggtgccgacaacagccaccccgggcggctgcccggtgcaaccggcatgttgccttgg                      <  2:21299‑M2/140‑80 (MQ=255)                                                                                                                                     ggATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATggcggcgtcatccagcgcgatcggtgccgacaacagccaccccgggcggctgcccggtgcaaccggcatgttgccttgg                      >  1:21299‑M2/1‑61 (MQ=255)                                                                                                                                       aTGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGc                                                     <  4:192197/107‑1 (MQ=255)                                                                                                                                       aTGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGc                                                     >  3:192197/1‑107 (MQ=255)                                                                                                                                          aCGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATggcggcgtcatccagcgcgatcggtgccgacaacagccaccccgggcggctgcccggtgcaaccggcatgttgccttgggcaccctgctccgc        <  4:17946‑M2/149‑94 (MQ=255)                                                                                                                                             ccgccTACAAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTgg     >  8:186861/1‑149 (MQ=255)                                                                                                                                              cgccatcccaccaacctgattcgatgcgttcggcatagccctgcacctggtaggcggcgtcatccagcgcgatcggtgccgacaacagccaccccgggcggctgcccggtgcaaccggcatgttgccttgggcaccctgctccgccaaa    <  6:88992‑M1/149‑146 (MQ=255)                                                                                                                                                ccTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTg  <  4:121367/149‑1 (MQ=255)                                                                                                                                                ccTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTg  >  8:215325/1‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                    AAGGGGCTTGGCGCAGCCGCCGATCACCGCCCCGAATGCGCCTGGCATTTGGCGGAGCAGGGTGCCCAAGGCAACATGCCGGTTGCACCGGGCAGCCGCCCGGGGTGGCTGTTGT‑CGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTG  >  NC_002947/3527900‑3528190

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.