New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3528043	44 (1.040)	4 (0.100)	4/244	NT	8.3%	coding (1254/1419 nt)	imuB	DNA repair DNA linked protein
	?	NC_002947	= 3528091	47 (1.180)					coding (1302/1419 nt)	imuB	DNA repair DNA linked protein

TTTGGCGGAGCAGGGTGCCCAAGGCAACATGCCGGTTGCACCGGGCAGCCGCCCGGGGTGGCTGTTGT‑CGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCA  >  NC_002947/3527947‑3528233                                                                                                                                                  |                                                                                                                                               tttGGCGGAGCAGGGTGCCCAAGGCAACATGCCGGTTGCACCGGGCAGCCGCCCGGGGTGGCTGTTGT‑CGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATggcg                                                                                                                                            <  6:88992‑M2/149‑5 (MQ=255)      cGGAGCAGGGTGCCCAAGGCAACATGCCGGTTGCACCGGGCAGCCGCCCGGGGTGGCTGTTGT‑CGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGAt                                                                                                                                       >  5:11991/1‑149 (MQ=255)                  cccAAGGCAACATGCCGGTTGCACCGGGCAGCCGCCCGGGGTGGCTGTTGT‑CGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGac                                                                                                                           >  1:138453/1‑149 (MQ=255)                   ccAAGGCAACATGCCGGTTGCACCGGGCAGCCGCCCGGGGTGGCTGTTGTGCGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGac                                                                                                                           >  1:202550/1‑149 (MQ=255)                   ccAAGGCAACATGCCGGTTGCACCGGGCAGCCGCCCGGGGTGGCTGTTGT‑CGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGac                                                                                                                           >  4:27787/1‑148 (MQ=255)                    cAAGGCAACATGCCGGTTGCACCGGGCAGCCGCCCGGGGTGGCTGTTGT‑CGGTACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGacta                                                                                                                         <  8:208905/149‑1 (MQ=255)                    cAAGGCAACATGCCGGTTGCACCGGGCAGCCGCCCGGGGTGGCTGTTGT‑CGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTACAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGacta                                                                                                                         >  4:222710/1‑149 (MQ=255)                     aaGGCAACATGCCGGTTGCACCGGGCAGCCGCCCGGGGTGGCTGTTGT‑CGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGactac                                                                                                                        >  1:5400/1‑149 (MQ=255)                        gCAACATGCCGGTTGCACCGGGCAGCCGCCCGGGGTGGCTGTTGT‑CGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACtactac                                                                                                                     >  4:113686/1‑149 (MQ=255)                              tGCCGGTTGCACCGGGCAGCCGCCCGGGGTGGCTGTTGT‑CGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATc                                                                                                               <  2:40933/149‑1 (MQ=255)                                      gCACCGGGCAGCCGCCCGGGGTGGCTGTTGT‑CGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAAccc                                                                                                        <  6:11991/148‑1 (MQ=255)                                       cACCGGGCAGCCGCCCGGGGTGGCTGTTGT‑CGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGt                                                                                                      <  5:60209/149‑1 (MQ=255)                                       cACCGGGCAGCCGCCCGGGGTGGCTGTTGT‑CGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGt                                                                                                      <  3:27787/149‑1 (MQ=255)                                         ccGGGCAGCCGCCCGGGGTGGCTGTTGT‑CGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGa                                                                                                    >  2:204179/1‑149 (MQ=255)                                                 ccgccCGGGGTGGCTGTTGT‑CGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGac                                                                                                                           >  4:69432/1‑118 (MQ=255)                                                 ccgccCGGGGTGGCTGTTGT‑CGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGac                                                                                                                           <  3:69432/118‑1 (MQ=255)                                                    ccccGGGCGGCTGTTGT‑CGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGcgcg                                                                                         >  7:2294/1‑149 (MQ=255)                                                     ccGGGGTGGCTGTTGT‑CGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCgg                                                                                        >  3:15514/1‑149 (MQ=255)                                                         ggTGGCTGTTGT‑CGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGTGATGGCGGCGAAGTGCGTCGCGACTACTACCGCATCACAACCCGAGACGGCCTGCGCGGCTgg                                                                                    >  3:200035/1‑149 (MQ=255)                                                          gTGGCTGTTGT‑CGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTACAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTggg                                                                                   <  3:222710/149‑1 (MQ=255)                                                               tgttgt‑CGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTAc                                                                              >  6:44285/1‑149 (MQ=255)                                                                gttgt‑CGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTAcc                                                                             >  1:7753/1‑149 (MQ=255)                                                                       ggCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGAc                                                                        <  2:7753/148‑1 (MQ=255)                                                                         cACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTg                                                                     <  2:5400/149‑1 (MQ=255)                                                                          aCCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGa                                                                    <  5:44285/149‑1 (MQ=255)                                                                          aCCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGa                                                                    <  4:15514/149‑1 (MQ=255)                                                                           ccGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTgcgc                                                                                          <  6:56784/126‑1 (MQ=255)                                                                           ccGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTgcgc                                                                                          >  5:56784/1‑126 (MQ=255)                                                                            cGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGc                                                                  >  5:78889/1‑149 (MQ=255)                                                                              aTCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGc                                                                  >  2:74236/1‑147 (MQ=255)                                                                              aTCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCa                                                                <  8:2294/149‑1 (MQ=255)                                                                              aTCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCa                                                                <  7:112819/149‑1 (MQ=255)                                                                                  cgcTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGcc                                                            >  2:24695/1‑149 (MQ=255)                                                                                      ggATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATggcggcgtcatccagcgcgatcggtgccgacaacagccaccccgggcggctgcccggtgcaaccggcatgttgccttgg                                                                 >  1:21299‑M2/1‑61 (MQ=255)                                                                                      ggATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATggcggcgtcatccagcgcgatcggtgccgacaacagccaccccgggcggctgcccggtgcaaccggcatgttgccttgg                                                                 <  2:21299‑M2/140‑80 (MQ=255)                                                                                        aTGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGc                                                                                                <  4:192197/107‑1 (MQ=255)                                                                                        aTGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGc                                                                                                >  3:192197/1‑107 (MQ=255)                                                                                           aCGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATggcggcgtcatccagcgcgatcggtgccgacaacagccaccccgggcggctgcccggtgcaaccggcatgttgccttgggcaccctgctccgc                                                   <  4:17946‑M2/149‑94 (MQ=255)                                                                                              ccgccTACAAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTgg                                                >  8:186861/1‑149 (MQ=255)                                                                                                 ccTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTg                                             >  8:215325/1‑149 (MQ=255)                                                                                                 ccTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTg                                             <  4:121367/149‑1 (MQ=255)                                                                                                          tGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGggttgg                                    <  2:138453/149‑1 (MQ=255)                                                                                                               ggCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCg                                >  4:115896/1‑148 (MQ=255)                                                                                                                 cTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCAt                             <  6:78889/149‑1 (MQ=255)                                                                                                                    tGCCGAACGCATCGAATCAGGTTGGTGGGATggcggcgtcatccagcgcgatcggtgccgacaacagccaccccgggcggctgcccggtgcaaccggcatgttgccttgggcaccctgctccgccaaatgccaggcgcattcggggcgg                          >  3:17946‑M2/1‑31 (MQ=255)                                                                                                                        gAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACAcc                      <  1:204179/149‑1 (MQ=255)                                                                                                                            gCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGCGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGc                               <  7:95603/136‑1 (MQ=255)                                                                                                                            gCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCCCGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGc                               >  8:95603/1‑136 (MQ=255)                                                                                                                              aTCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGt                >  2:44274/1‑149 (MQ=255)                                                                                                                                    tCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGcc          >  7:135102/1‑149 (MQ=255)                                                                                                                                        gTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGc      >  4:4791/1‑149 (MQ=255)                                                                                                                                         ttGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGCGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCt     <  1:44274/149‑1 (MQ=255)                                                                                                                                            gtggGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCa  >  5:119692/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                               TTTGGCGGAGCAGGGTGCCCAAGGCAACATGCCGGTTGCACCGGGCAGCCGCCCGGGGTGGCTGTTGT‑CGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCA  >  NC_002947/3527947‑3528233

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.