New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3667005 =	41 (0.970)	5 (0.130)	3/240	NT	12.6%	coding (641/693 nt)	PP_3230	phosphoribosyl transferase domain‑containing protein
	?	NC_002947	3667054 =	31 (0.790)					coding (690/693 nt)	PP_3230	phosphoribosyl transferase domain‑containing protein

CCGTCCCGGTCGCACCGCCAGAAACGCTCGAAGCGCTGTACGGTGAAGTGGATGAGCTGGTGTGCCCGCTGGTGCCTGAGCGGATGGTTTCGGTTGGCTATTGGTATCAGGACTTCCCGCAGACATCAGACGAGGAAGTGATGACGCTCATGGGGCAGGCCGATCAGCAAGCGCTTTGCCGGAGGGCGCCCCATGACTGAGCACAGGGTTGAAGTTCGCACACAGACGATGAAGCTGGCAGGCGTCGAACTCGTGGCGGGCGTCTGAGCGCCCGCAATCAATAC  >  NC_002947/3666858‑3667141                                                                                                                                                    |                                                                                                                                         ccGTCCCGGTCGCACCGCCAGAAACGCTCGAAGCGCTGTACGGTGAAGTGGATGAGCTGGTGTGCCCGCTGGTGCCTGAGCGGATGGTTTCGGTTGGCTATTGGTATCAGGACTTCCCGCAGACATCAGACGAGGAAGTGATGACGCt                                                                                                                                          >  6:233674/1‑148 (MQ=255)  agctcagcaggtcgaagagtagtgaccttaggccacgtgccgcgagagcgtctgctacgtattgattgcgggcgctcagacgcccgccacgagttcgacgcctgccagcttcatcgtctgtgtgcgaacttcaaccctgtgctcagTCa                                                                                                                                        <  4:148034‑M1/3‑1 (MQ=255)       agcaggtcgaagagtagtgaccttaggccacgtgccgcgagagcgtctgctacgtattgattgcgggcgctcagacgcccgccacgagttcgacgcctgccagcttcatcgtctgtgtgcgaacttcaaccctgtgctcagTCATgggg                                                                                                                                   <  3:159286‑M1/8‑1 (MQ=255)               ccGCCAGAAACGCTCGAAGCGCTGTACGGTGAAGTGGATGAGCTGGTGTGCCCGCTGGTGCCTGAGCGGATGGTTTCGGTTGGCTATTGGTATCAGGACTTCCCGCAGACATCAGACGAGGAAGTGATGACGCTCATGGGGCAGGCCGa                                                                                                                           <  3:251544/149‑1 (MQ=255)                  ccAGAAACGCTCGAAGCGCTGTACGGTGAAGTGGATGAGCTGGTGTGCCCGCTGGTGCCTGAGCGGATGGTTTCGGTTGGCTATTGGTATCAGGACTTCCCGCAGACATCAGACGAGGAAGTGATGACGCTCATGGGGCAGGCCGATCa                                                                                                                        <  4:164353/149‑1 (MQ=255)                    aGAAACGCTCGAAGCGCTGTACGGTGAAGTGGATGAGCTGGTGTGCCCGCTGGTGCCTGAGCGGATGGTTTCGGTTGGCTATTGGTATCAGGACTTCCCGCAGACATCAGACGAGGAAGTGATGACGCTCATGGGGCAGGCCGATCa                                                                                                                        >  6:244839/1‑147 (MQ=255)                    aGAAACGCTCGAAGCGCTGTACGGTGAAGTGGATGAGCTGGTGTGCCCGCTGGTGCCTGAGCGGATGGTTTCGGTTGGCTATTGGTATCAGGACTTCCCGCAGACATCAGACGAGGAAGTGATGACGCTCATGGGGCAGGCCGATCa                                                                                                                        <  5:244839/147‑1 (MQ=255)                    aGAAACGCTCGAAGCGCTGTACGGTGAAGTGGATGAGCTGGTGTGCCCGCTGGTGCCTGAGCGGATGGTTTCGGTTGGCTATTGGTATCAGGACTTCCCGCAGACATCAGACGAGGAAGTGATGACGCTCATGGGGCAGGCCGATCAGc                                                                                                                      <  6:79987/149‑1 (MQ=255)                            tCGAAGCGCTGTACGGTGAAGTGGATGAGCTGGTGTGCCCGCTGGTGCCTGAGCGGATGGTTTCGGTTGGCTATTGGTATCAGGACTTCCCGCAGACATCAGACGAGGAAGTGATGACGCTCATGGGGCAGGCCGAt                                                                                                                          >  5:217834/1‑137 (MQ=255)                            tCGAAGCGCTGTACGGTGAAGTGGATGAGCTGGTGTGCCCGCTGGTGCCTGAGCGGATGGTTTCGGTTGGCTATTGGTATCAGGACTTCCCGCAGACATCAGACGAGGAAGTGATGACGCTCATGGGGCAGGCCGAt                                                                                                                          <  6:217834/137‑1 (MQ=255)                            tCGAAGCGCTGTACGGTGAAGTGGATGAGCGGGTGTGCCCGCTGGTGCCTGAGCGGATGGTTTCGGTTGGCTATTGGTATCAGGACTTCCCGCAGACATCAGACGAGGAAGTGATGACGCTCATGGGGCAGGCCGATCAGCAAGCGCtt                                                                                                              >  6:255635/1‑149 (MQ=255)                              gAAGCGCTGTACGGTGAAGTGGATGAGCTGGTGTGCCCGCTGGTGCCTGAGCGGATGGTTTCGGTTGGCTATTGGTATCAGGACTTCCCGCAGACATCAGACGAGGAAGTGATGACGCTCATGGGGCAGGCCGATCAGCAAGCGCTTTg                                                                                                            >  5:67308/1‑149 (MQ=255)                               aaGCGCTGTACGGTGAAGTGGATGAGCTGGTGTGCCCGCTGGTGCCTGAGCGGATGGTTTCGGTTGGCTATTGGTATCAGGACTTCCCGCAGACATCAGACGAGGAAGTGATGACGCTCATGGGGCAGGCCGATCAGCAAGCGCTTTGc                                                                                                           >  1:266996/1‑149 (MQ=255)                                   gcTGTACGGTGAAGTGGATGAGCTGGTGTGCCCGCTGGTGCCTGAGCGGATGGTTTCGGTTGGCTATTGGTATCAGGACTTCCCGCAGACATCAGACGAGGAAGTGATGACGCTCATGGGGCAGGCCGATCAGCAAGCGCTTTGCCGGa                                                                                                       <  6:67308/149‑1 (MQ=255)                                       tACGGTGAAGTGGATGAGCTGGTGTGCCCGCTGGTGCCTGAGCGGATGGTTTCGGTTGGCTATTGGTATCAGGACTTCCCGCAGACATCAGACGAGGAAGTGATGACGCTCATGGGGCAGGCCGATCAGCAAGCGCTTTGCCGGAggg                                                                                                    <  2:266996/148‑1 (MQ=255)                                            tGAAGTGGATGAGCTGGTGTGCCCGCTGGTGCCTGAGCGGATGGTTTCGGTTGGCTATTGGTATCAGGACTTCCCGCAGACATCAGACGAGGAAGTGATGACGCTCATGGGGCAGGCCGATCAGCAAGCGCTTTGCCGGAGGGCGccc                                                                                               >  8:215523/1‑148 (MQ=255)                                              agagcgtctgctacgtattgattgcgggcgctcagacgcccgccacgagttcgacgcctgccagcttcatcgtctgtgtgcgaacttcaaccctgtgctcagTCATGGGGCAGGCCGATCAGCAAGCGCTTTGCCGGAGGGCGCCCCAt                                                                                            >  1:93786‑M1/103‑149 (MQ=255)                                                    aTGAGCTGGTGTGCCCGCTGGTGCCTGAGCGGATGGTTTCGGTTGGCTATTGGTATCAGGACTTCCCGCAGACATCAGACGAGGAAGTGATGACGCTCATGGGGCAGGCCGATCAGCAAGCGCTTTGCCGGAGGGCGCCCCATGACTGa                                                                                      <  7:215523/149‑1 (MQ=255)                                                         cTGGTGTGCCCGCTGGTGCCTGAGCGGATGGTTTCGGTTGGCTATTGGTATCAGGACTTCCCGCAGACATCAGACGAGGAAGTGATGACGCTCATGGGGCAGGCCGATCAGCAAGCGCTTTGCCGGAGGGCGCCCCATGACTGAGca                                                                                   >  6:200087/1‑147 (MQ=255)                                                          tGGTGTGCCCGCTGGTGCCTGAGCGGATGGTTTCGGTTGGCTATTGGTATCAGGACTTCCCGCAGACATCAGACGAGGAAGTGATGACGCTCATGGGGCAGGCCGATCAGCAAGCGCTTTGCCGGAGGGCGCCCCATGACTGAGCACAg                                                                                >  5:166182/1‑149 (MQ=255)                                                           ggTGTGCCCGCTGGTGCCTGAGCGGATGGTTTCGGTTGGCTATTGGTATCAGGACTTCCCGCAGACATCAGACGAGGAAGTGATGACGCTCATGGGGCAGGCCGATCAGCAAGCGCTTTGCCGGAGGGCGCCCCATGACTGAGCACAgg                                                                               >  3:148034/1‑149 (MQ=255)                                                            gtgtGCCCGCTGGTGCCTGAGCGGATGGTTTCGGTTGGCTATTGGTATCAGGACTTCCCGCAGACATCAGACGAGGAAGTGATGACGCTCATGGGGCAGGCCGATCAGCAAGCGCTTTGCCGGAGGGCGCCCCATGACTGAGCACAggg                                                                              <  5:233674/149‑1 (MQ=255)                                                            gtgtGCCCGCTGGTGCCTGAGCGGATGGTTTCGGTTGGCTATTGGTATCAGGACGTCCCGCAGACATCAGACGAGGAAGTGATGACGCTCATGGGGCAGGCCGATCAGCAAGCGCTTTGCCGGAGGGCGCCCCATGACTGAGCACAggg                                                                              <  3:163220/149‑1 (MQ=255)                                                               ttgattgcgggcgctcagacgcccgccacgagttcgacgcctgccagcttcatcgtctgtgtgcgaacttcaaccctgtgctcagTCATGGGGCAGGCCGATCAGCAAGCGCTTTGCCGGAGGGCGCCCCATGAc                                                                                         <  5:4062‑M1/50‑1 (MQ=255)                                                               ttgattgcgggcgctcagacgcccgccacgagttcgacgcctgccagcttcatcgtctgtgtgcgaacttcaaccctgtgctcagTCATGGGGCAGGCCGATCAGCAAGCGCTTTGCCGGAGGGCGCCCCATGAc                                                                                         >  6:4062‑M1/86‑135 (MQ=255)                                                               ttgattgcgggcgctcagacgcccgccacgagttcgacgcctgccagcttcatcgtctgtgtgcgaacttcaaccctgtgctcagTCATGGGGCAGGCCGATCAGCAAGCGCTTTGCCGGAGGGCGCCCCATGAc                                                                                         >  6:278‑M1/86‑135 (MQ=255)                                                               ttgattgcgggcgctcagacgcccgccacgagttcgacgcctgccagcttcatcgtctgtgtgcgaacttcaaccctgtgctcagTCATGGGGCAGGCCGATCAGCAAGCGCTTTGCCGGAGGGCGCCCCATGAc                                                                                         <  5:278‑M1/50‑1 (MQ=255)                                                                     cTGGTGCCTGAGCGGATGGTTTCGGTTGGCTATTGGTATCAGGACTTCCCGCAGACATCAGACGAGGAAGTGATGACGCTCATGGGGCAGGCCGATCAGCAAGCGCTTTGCCGGAGGGCGCCCCATGACTGAGCACAGGGTTGAAGTTc                                                                     <  6:166182/149‑1 (MQ=255)                                                                      tGGTGCCTGAGCGGATGGTTTCGGTTGGCTATTGGTATCAGGACTTCCCGCAGACATCAGACGAGGAAGTGATGACGCTCATGGGGCAGGCCGATCAGCAAGCGCTTTGCCGGAGGGCGCCCCATGACTGAGCACAGGGTTGAAGTTCg                                                                    >  3:198646/1‑149 (MQ=255)                                                                        gTGCCTGAGCGGATGGTTTCGGTTGGCTATTGGTATCAGGACTTCCCGCAGACATCAGACGAGGAAGTGATGACGCTCATGGGGCAGGCCGATCAGCAAGCGCTTTGCCGGAGGGCGCCCCATGACTGAGCACAGGGTTGAAGTTCGca                                                                  <  4:198646/149‑1 (MQ=255)                                                                            cTGAGCGGATGGTTTCGGTTGGCTATTGGTATCAGGACTTCCCGCAGACATCAGACGAGGAAGTGATGACGCTCATGGGGCAGGCCGATCAGCAAGCGCTTTGCCGGAGGGCGCCCCATGACTGAGCACAGGGTTGAAGTTCGcaca                                                                >  1:163566/1‑147 (MQ=255)                                                                               agacgcccgccacgagttcgacgcctgccagcttcatcgtctgtgtgcgaacttcaaccctgtgctcagTCAt                                                                                                                                       <  1:133781‑M1/4‑1 (MQ=255)                                                                               agacgcccgccacgagttcgacgcctgccagcttcatcgtctgtgtgcgaacttcaaccctgtgctcagTCAt                                                                                                                                       >  2:133781‑M1/70‑73 (MQ=255)                                                                                  ggAGGGTTTCGGTTGGCTATTGGTATCAGGACTTCCCGCAGACATCAGACGAGGAAGTGATGACGCTCATGGGGCAGGCCGATCAGCAAGCGCTTTGCCGGAGGGCGCCCCATGACTGAGCACAGGGTTGAAGTTCGCACACAGACGAt                                                        <  4:73813/149‑1 (MQ=255)                                                                                   gATGGTTTCGGTTGGCTATTGGTATCAGGACTTCCCGCAGACATCAGACGAGGAAGTGATGACGCTCATGGGGCAGGCCGATCAGCAAGCGCTTTGCCGGAGGGCGCCCCATGACTGAGCACAGGGTTGAAGTTCGCACACAGACGAt                                                        >  1:99128/1‑148 (MQ=255)                                                                                       gTTTCGGTTGGCTATTGGTATCAGGACTTCCCGCAGACATCAGACGAGGAAGTGATGACGCTCATGGGGCAGGCCGATCAGCAAGCGCTTTGCCGGAGGGCGCCCCATGACTGAGCACAGGGTTGAAGTTCGCACACAGACGATGAAg                                                    <  2:163566/148‑1 (MQ=255)                                                                                             gTTGGCTATTGGTATCAGGACTTCCCGCAGACATCAGACGAGGAAGTGATGACGCTCATGGGGCAGGCCGATCAGCAAGCGCTTTGCCGGAGGGCGCCCCATGACTGAGCACAGGGTTGAAGTTCGCACACAGACGATGAAGCTGGCAg                                             >  7:5869/1‑149 (MQ=255)                                                                                                           tCAGGACTTCCCGCAGACATCAGACGAGGAAGTGATGACGCTCATGGGGCAGGCCGATCAGCAAGCGCTTTGCCGGAGGGCGCCCCATGACTGAGCACAGGGTTGAAGTTCGCACACAGACGATGAAGCTGGCAGGCGTCGAACTCGTg                               <  8:5869/149‑1 (MQ=255)                                                                                                              ggACTTCCCGCAGACATCAGACGAGGAAGTGATGACGCTCATGGGGCAGGCCGATCAGCAAGCGCTTTGCCGGAGGGCGCCCCATGACTGAGCACAGGGTTGAAGTTCGCACACAGACGATGAAGCTGGCAGGCGTCGAACTCGTggcg                            >  3:132458/1‑149 (MQ=255)                                                                                                              ggACTTCCCGCAGACATCAGACGAGGAAGTGATGACGCTCATGGGGCAGGCCGATCAGCAAGCGCTTTGCCGGAGGGCGCCCCATGACTGAGCACAGGGTTGAAGTTCGCACACAGACGATGAAGCTGGCAGGAGTCGAACTCGTggcg                            >  5:274369/1‑149 (MQ=255)                                                                                                                      cGCAGACATCAGACGAGGAAGTGATGACGCTCATGGGGCAGGCCGATCAGCAAGCGCTTTGCCGGAGGGCGCCCCATGACTGAGCACAGGGTTGAAGTTCGCACACAGACGATGAAGCTGGCAGGCGTCGAACTCGTGGCGGGCGTCt                     >  8:149757/1‑148 (MQ=255)                                                                                                                      cGCAGACATCAGACGAGGAAGTGATGACGCTCATGGGGCAGGCCGATCAGCAAGCGCTTTGCCGGAGGGCGCCCCATGACTGAGCACAGGGTTGAAGTTCGCACACAGACGATGAAGCTGGCAGGCGTCGAACTCGTGGCGGGCGTCt                     >  2:246702/1‑148 (MQ=255)                                                                                                                       gCAGACATCAGACGAGGAAGTGATGACGCTCATGGGGCAGGCCGATCAGCAAGCGCTTTGCCGGAGGGCGCCCCATGACTGAGCACAGGGTTGAAGTTCGCACACAGACGATGAAGCTGGCAGGCGt                                         >  6:101090/1‑127 (MQ=255)                                                                                                                       gCAGACATCAGACGAGGAAGTGATGACGCTCATGGGGCAGGCCGATCAGCAAGCGCTTTGCCGGAGGGCGCCCCATGACTGAGCACAGGGTTGAAGTTCGCACACAGACGATGAAGCTGGCAGGCGt                                         <  5:101090/127‑1 (MQ=255)                                                                                                                             aTCAGACGAGGAAGTGATGACGCTCATGGGGCAGGCCGATCAGCAAGCGCTTTGCCGGAGGGCGCCCCATGACTGAGCACAGGGTTGAAGTTCGCACACAGACGATGAAGCTGGCAGGCGTCGAACTCGTGGCGGTCGTCTGAGCGccc             >  6:33681/1‑149 (MQ=255)                                                                                                                             aTCAGACGAGGAAGTGATGACGCTCATGGGGCAGGCCGATCAGCAAGCGCTTTGCCGGAGGGCGCCCCATGACTGAGCACAGGGTTGAAGTTCGCACACAGACGATGAAGCTGGCAGGCGTCGAACTCGTGGCGGGCGTCTGAGCGccc             <  5:200087/149‑1 (MQ=255)                                                                                                                             aTCAGACGAGGAAGTGATGACGCTCATGGGGCAGGCCGATCAGCAAGCGCTTTGCCGGAGGGCGCCCCATGACTGAGCACAGGGTTGAAGTTCGCACACAGACGATGAAGCTGGCAGGCGTCGAACTCGTGGCGGGCGTCTGAGCGccc             <  2:99128/149‑1 (MQ=255)                                                                                                                                    gAGGAAGTGATGACGCTCATGGGGCAGGCCGATCAGCAAGCGCTTTGCCGGAGGGCGCCCCATGACTGAGCACAGGGTTGAAGTTCGCACACAGACGATGAAGCTGGCAGGCGTCGAACTCGTGGCGGGCGTCTGAGCGCCCGcaatc       >  5:224850/1‑148 (MQ=255)                                                                                                                                      ggAAGTGATGACGCTCATGGGGCAGGCCGATCAGCAAGCGCTTTGCCGGAGGGCGCCCCATGACTGAGCACAGGGTTGAAGTTCGCACACAGACGATGAAGCTGGCAGGCGTCGAACTCGTGGCGGGCGTCTGAGCGCCCGcaatc       >  7:115317/1‑146 (MQ=255)                                                                                                                                      ggAAGTGATGACGCTCATGGGGCAGGCCGATCAGCAAGCGCTTTGCCGGAGGGCGCCCCATGACTGAGCACAGGGTTGAAGTTCGCACACAGACGATGAAGCTGGCAGGCGTCGAACTCGTGGCGGGCGTCTGAGCGCCCGcaatc       <  8:115317/146‑1 (MQ=255)                                                                                                                                        aaGTGATGACGCTCATGGGGCAGGCCGATCAGCAAGCGCTTTGCCGGAGGGCGCCCCATGACTGAGCACAGGGTTGAAGTTCGCACACAGACGATGAAGCTGGCAGGCGTCGAACTCGTGGCGGGCGTCTGAGCGCCCGCAATCAATAc  <  4:132458/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                         CCGTCCCGGTCGCACCGCCAGAAACGCTCGAAGCGCTGTACGGTGAAGTGGATGAGCTGGTGTGCCCGCTGGTGCCTGAGCGGATGGTTTCGGTTGGCTATTGGTATCAGGACTTCCCGCAGACATCAGACGAGGAAGTGATGACGCTCATGGGGCAGGCCGATCAGCAAGCGCTTTGCCGGAGGGCGCCCCATGACTGAGCACAGGGTTGAAGTTCGCACACAGACGATGAAGCTGGCAGGCGTCGAACTCGTGGCGGGCGTCTGAGCGCCCGCAATCAATAC  >  NC_002947/3666858‑3667141

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.