New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3951450 =	37 (0.880)	4 (0.100)	4/244	NT	11.9%	coding (447/666 nt)	PP_3487	hypothetical protein
	?	NC_002947	3951493 =	24 (0.600)					coding (404/666 nt)	PP_3487	hypothetical protein

TCCAGCGTTTACCTGCAACATCACCGGCAATCAGCTGCGTCGAATGCTGCTCGGGACTCGGCAGGAACTGCCCTATACGGCCAAGCACCAGGTCGACATTGGCCTTGTCGCCGGTCAGGAACAGCCAGTTCGGCCCATCCACCCCCTGCTTGGCGGCGAACGCCTTCAGCGCCTCGGGGGTGTCGTTCAGCGGGTCACTGCTGATCGACACGAAGGTCACCTGGGCGGCCAGCGCTGGCCCCATGGCCTCGCGCACCTCGCGCAGCTTGCGGGTGATCAACGGG  >  NC_002947/3951311‑3951594                                                                                                                                            |                                                                                                                                                 tCCAGCGTTTACCTGCAACATCACCGGCAATCAGCTGCGTCGAATGCTGCTCGGGACTCGGCAGGAACTGCCCTATACGGCCAAGCACCAGGTCGACATTGGCCTTGTCGCCGGTCAGGAACAGCCAGTTCGGCCCATCCACCCCCTGc                                                                                                                                         >  1:8781/1‑149 (MQ=255) tCCAGCGTTTACCTGCAACATCACCGGCAATCAGCTGCGTCGAATGCTGCTCGGGACTCGGCAGGAACTGCCCTATACGGCCAAGCACCAGGTCGACATTGGCCTTGTCGCCGGTCAGGAACAGCCAGTTCGGCCCATCCACCCCCTGc                                                                                                                                         >  8:158822/1‑149 (MQ=255)  ccAGCGTTTACCTGCAACATCACCGGCAATCAGCTGCGTCGAATGCTGCTCGGGACTCGGCAGGAACTGCCCTATACGGCCAAGCACCAGGTCGACATTGGCCTTGTCGCCGGTCAGGAACAGCCAGTTCGGCCCATCCACCCCCTGCt                                                                                                                                        >  4:101788/1‑149 (MQ=255)   ctcaacgtgatcttcacccattgcaccgatgcctgcccgttgatcacccgcaagctgcgcgaggtgcgcgaggccatggggccagcgctggccgcccaggtgaccttcgtgtcgatcagcagtgacccgctgaacgaCACCCCCTGCtt                                                                                                                                       <  6:117832‑M1/12‑1 (MQ=255)   cAGCGTTTACCTGCAACATCACCGGCAATCAGCTGCGTCGAATGCTGCTCGGGACTCGGCAGGAACTGCCCTATACGGCCAAGCACCAGGTCGACATTGGCCTTGTCGCCGGTCAGGAACAGCCAGTTCGGCCCATCCACCCCCTGc                                                                                                                                         <  1:120543/147‑1 (MQ=255)   cAGCGTTTACCTGCAACATCACCGGCAATCAGCTGCGTCGAATGCTGCTCGGGACTCGGCAGGAACTGCCCTATACGGCCAAGCACCAGGTCGACATTGGCCTTGTCGCCGGTCAGGAACAGCCAGTTCGGCCCATCCACCCCCTGCtt                                                                                                                                       >  3:225551/1‑149 (MQ=255)   cAGCGTTTACCTGCAACATCACCGGCAATCAGCTGCGTCGAATGCTGCTCGGGACTCGGCAGGAACTGCCCTATACGGCCAAGCACCAGGTCGACATTGGCCTTGTCGCCGGTCAGGAACAGCCAGTTCGGCCCATCCACCCCCTGCt                                                                                                                                        <  3:101788/148‑1 (MQ=255)      cGTTTACCTGCAACATCACCGGCAATCAGCTGCGTCGAATGCTGCTCGGGACTCGGCAGGAACTGCCCTATACGGCCAAGCACCAGGTCGACATTGGCCTTGTCGCCGGTCAGGAACAGCCAGTTCGGCCCATCCACCCCCTGCTTggc                                                                                                                                    <  7:68687/149‑1 (MQ=255)                  aCATCACCGGCAATCAGCTGCGTCGAATGCTGCTCGGGACTCGGCAGGAACTGCCCTATACGGCCAAGCACCAGGTCGACATTGGCCTTGTCGCCGGTCAGGAACAGCCAGTTCGGCCCATCCACCCCCTGCTTGGCGGCGAACGCCtt                                                                                                                        <  2:218688/149‑1 (MQ=255)                   cATCACCGGGAATCAGCTGCGTCGAATGCTGCTCGGGACGCGGCAGGAACTGCCCTATACGGCCAAGCACCAGGTCGACATTGGCCTTGTCGCCGGTCAGGAACAGCCAGTTCGGCCCATCCACCCCCTGCTTGGCGGCGAACGCCTTc                                                                                                                       <  4:205584/149‑1 (MQ=255)                   cATCACCGGCAATCAGCTGCGTCGAATGCTGCGCGGGACTCGGCAGGAACTGCCCTATACGGCCAAGCACCAGGTCGACATTGGCCTTGTCGCCGGTCAGGAACAGCCAGTTCGGCCCATCCACCCCCTGCTTGGCGGCGAACGCCTTc                                                                                                                       <  6:188160/149‑1 (MQ=255)                       aCCGGCAATCAGCTGCGTCGAATGCTGCTCGGGACTCGGCAGGAACTGCCCTATACGGCCAAGCACCAGGTCGACATTGGCCTTGTCGCCGGTCAGGAACAGCCAGTTCGGCCCATCCACCCCCTGCTTGGCGGCGAACGCCTTCAgcg                                                                                                                   >  4:237359/1‑149 (MQ=255)                       aCCGGCAATCAGCTGCGTCGAATGCTGCTCGGGACTCGGCAGGAACTGCCCTATACGGCCAAGCACCAGGTCGACATTGGCCTTGTCGCCGGTCAGGAACAGCCAGTTCGGCCCATCCACCCCCTGCTTGGCGGCGAACGCCTTCAgcg                                                                                                                   >  5:110424/1‑149 (MQ=255)                        ccGGCAATCAGCTGCGTCGAATGCTGCTCGGGACTCGGCAGGAACTGCCCTATACGGCCAAGCACCAGGTCGACATTGGCCTTGTCGCCGGTCAGGAACAGCCAGTTCGGCCCATCCAcc                                                                                                                                               <  2:248027/120‑1 (MQ=255)                        ccGGCAATCAGCTGCGTCGAATGCTGCTCGGGACTCGGCAGGAACTGCCCTATACGGCCAAGCACCAGGTCGACATTGGCCTTGTCGCCGGTCAGGAACAGCCAGTTCGGCCCATCCAcc                                                                                                                                               >  1:248027/1‑120 (MQ=255)                         cGGCAATCAGCTGCGTCGAATGCTGCTCGGGACTCGGCAGGAACTGCCCTATACGGCCAAGCACCAGGTCGACATTGGCCTTGTCGCCGGTCAGGAACAGCCAGTTCGGCCCATCCACCCCCTGCTTGGCGGCGAACGCCTTCAGCGcc                                                                                                                 >  7:15499/1‑149 (MQ=255)                            cAATCAGCTGCGTCGAATGCTGCTCGGGACTCGGCAGGAACTGCCCTATACGGCCAAGCACCAGGTCGACATTGGCCTTGTCGCCGGTCAGGAACAGCCAGTTCGGCCCATCCACCCCCTGCTTGGCGGCGAACGCCTTCAGCGCCTCg                                                                                                              <  6:110424/149‑1 (MQ=255)                               tCAGCTGCGTCGAATGCTGCTCGGGACTCGGCAGGAACTGCCCTATACGGCCAAGCACCAGGTCGACATTGGCCTTGTCGCCGGTCAGGAACAGCCAGTTCGGCCCATCCACCCCCTGCTTGGCGGCGAACGCCTTCAGCGCCTCgggg                                                                                                           <  3:237359/149‑1 (MQ=255)                               tCAGCTGCGTCGAATGCTGCTCGGGACTCGGCAGGAACTGCCCTATACGGCCAAGCACCAGGTCGACATTGGCCTTGTCGCCGGTCAGGAACAGCCAGTTCGGCCCATCCACCCCCTGCTTGGCGGCGAACGCCTTCAGCGCCTCgggg                                                                                                           <  3:71637/149‑1 (MQ=255)                               tCAGCTGCGTCGAATGCTGCTCGGGACTCGGCAGGAACTGCCCTATACGGCCAAGCACCAGGTCGACATTGGCCTTGTCGCCGGTCAGGAACAGCCAGTTCGGCCCATCCACCCCCTGCTTGGCGGCGAACGCCTTCAGCGCCTCgggg                                                                                                           <  7:158822/149‑1 (MQ=255)                               tCAGCTGCGTCGAATGCTGCTCGGGACTCGGCAGGAACTGCCCTATACGGCCAAGCACCAGGTCGACATTGGCCTTGTCGCCGGTCAGGAACAGCCAGTTCGGCCCATCCACCCCCTGCTTGGCGGCGAACGCCTTCAGCGCCTCgggg                                                                                                           <  2:8781/149‑1 (MQ=255)                               atgcctgcccgttgatcacccgcaagctgcgcgaggtgcgcgaggccatggggccagcgctggccgcccaggtgaccttcgtgtcgatcagcagtgacccgctgaacgaCACCCCCTGCTTGGCGGCGAACGCCTTCAGCGCCTCgggg                                                                                                           >  2:41168‑M1/110‑149 (MQ=255)                                tgcctgcccgttgatcacccgcaagctgcgcgaggtgcgcgaggccatggggccagcgctggccgcccaggtgaccttcgtgtcgatcagcagtgacccgctgaacgaCACCCCCTGCTTGGCGGCGAACGCCTTCAGCGCCTCggggg                                                                                                          >  1:238384‑M1/109‑149 (MQ=255)                                   ctgcccgttgatcacccgcaagctgcgcgaggtgcgcgaggccatggggccagcgctggccgcccaggtgaccttcgtgtcgatcagcagtgacccgctgaacgaCACCCCCTGCTTGGCGGCGAACGCCTTCAGCGCCTCGGGGgtgt                                                                                                       >  5:117832‑M1/106‑149 (MQ=255)                                   cTGCGTCGAATGCTGCTCGGGACTCGGCAGGAACTGCCCTATACGGCCAAGCACCAGGTCGACATTGGCCTTGTCGCCGGTCAGGAACAGCCAGTTCGGCCCATCCACCCCCTGCTTGGCGGCGAACGCCTTCAGCGCCTCGGGGgt                                                                                                         >  4:169469/1‑147 (MQ=255)                                      cccgttgatcacccgcaagctgcgcgaggtgcgcgaggccatggggccagcgctggccgcccaggtgaccttcgtgtcgatcagcagtgacccgctgaacgaCACCCCCTGCTTGGCGGCGAACGCCTTCAGCGCCTCGGGGGTGTc                                                                                                      >  3:51574‑M1/103‑147 (MQ=255)                                                tgctCGGGACTCGGCAGGAACTGCCCTATACGGCCAAGCACCAGGTCGACATTGGCCTTGTCGCCGGTCAGGAACAGCCAGTTCGGCCCATCCACCCCCTGCTTGGCGGCGAACGCCTTCAgcgc                                                                                                                  <  7:90644/125‑1 (MQ=255)                                                tgctCGGGACTCGGCAGGAACTGCCCTATACGGCCAAGCACCAGGTCGACATTGGCCTTGTCGCCGGTCAGGAACAGCCAGTTCGGCCCATCCACCCCCTGCTTGGCGGCGAACGCCTTCAgcgc                                                                                                                  >  8:90644/1‑125 (MQ=255)                                                   tCGGGACTCGGCAGGAACTGCCCTATACGGCCAAGCACCAGGTCGACATTGGCCTTGTCGCCGGTCAGGAACAGCCAGTTCGGCCCATCCACCCCCTGCTTGGCGGCGAACGCCTTCAGCGCCTCGGGGGTGTCGTTCAGCGGGTCAct                                                                                       >  1:108678/1‑149 (MQ=255)                                                            ggCAGGAACTGCCCTATACGGCCAAGCACCAGGTCGACATTGGCCTTGTCGCCGGTCAGGAACAGCCAGTTCGGCCCATCCACCCCCTGCTTGGCGGCGAACGCCTTCAGCGCCTCGGGGGTGTCGTTCAGCGGGTCACTGCTGATc                                                                                <  5:170264/147‑1 (MQ=255)                                                                   aCTGCCCTATACGGCCAAGCACCAGGTCGACATTGGCCTTGTCGCCGGTCAGGAACAGCCAGTTCGGCCCATCCACCCCCTGCTTGGCGGCGAACGCCTTCAGCGCCTCGGGGGTGTCGTTCAGCGGGTCACTGCTGATCGACACGAAg                                                                       <  4:225551/149‑1 (MQ=255)                                                                              cGGCCAAGCACCAGGTCGACATTGGCCTTGTCGCCGGTCAGGAACAGCCAGTTCGGCCCATCCACCCCCTGCTTGGCGGCGAACGCCTTCAGCGCCTCGGGGGTGTCGTTCAGCGGGTCACTGCTGATCGACACGAAGGTCACCTggg                                                             <  2:108678/148‑1 (MQ=255)                                                                                 ccattcACCAGGACTACATTGGCCAAGTCGCCGGTCAGGAAACGACAGTTCTGCCCATCCAAACCCTCCATGGCGGCCAACGCATTCATAACCTCGCGGGTCACGAACACAGCGACACTGCAGATCGACACGAAGGTCACCTGggcgt                                                          >  2:177212/6‑147 (MQ=255)                                                                                      cACCAGGTCGACATTGGCCTTGTCGCCGGTCAGGAACAGCCAGTTCGGCCCATCCACCCCCTGCTTGTCGGCGAACGCCTTCAGCGCCTCGGGGGTGTCGTTCAGCGGGTCACTGCTGATCGACACGAAGGTCACCTGGGCGGCCAgcg                                                    >  5:192855/1‑149 (MQ=255)                                                                                       aCCAGGTCGACATTGGCCTTGTCGCCGGTCAGGAACAGCCAGTTCGGCCCATCCACCCCCTGCTTGGCGGCGAACGCCTTCAGCGCCTCGGGGGTGTCGTTCAGCGGGTCACTGCTGATCGACACGAAGGTCACCTGGGCGGCCAgcgc                                                   >  7:128015/1‑149 (MQ=255)                                                                                        ccAGGTCGACATTGGCCTTGTCGCCGGTCAGGAACAGCCAGTGCGGCCCATCCACCCCCTGCTTGGCGGCGAACGCCTTCAGCGCCTCGGGGGTGTCGTTCAGCGGGTCACTGCTGATCGACACGAAGGTCACCTGGGCGGCCAGCGCt                                                  <  8:15499/149‑1 (MQ=255)                                                                                                aCATTGGCCTTGTCGCCGGTCAGGAACAGCCAGTTCGGCCCATCCACCCCCTGCTTGGCGGCGAACGCCTTCAGCGCCTCGGGGGTGTCGTTCAGCGGGTCACTGCTGATCGACACGAAGGTCACCTGGGCGGCCAGCGCTGGCCCCAt                                          <  8:128015/149‑1 (MQ=255)                                                                                                       ccTTGTCGCCGGTCAGGAACAGCCAGTTCGGCCCATCCACCCCCTGCTTGGCGGCGAACGCCTTCAGCGCCTCGGGGGTGTCGTTCAGCGGGTCACTGCTGATCGACACGAAGGTCACCTGGGCGGCCAGCGCTGGCCCCATGGcctcg                                   >  2:110169/1‑149 (MQ=255)                                                                                                                      ggAACAGCCAGTTCGGCCCATCCACCCCCTGCTTGGCGGCGAACGCCTTCAGCGCCTCGGGGGTGTCGTTCAGCGGGTCACTGCTGATCGACACGAAGGTCACCTGGGCGGCCAGCGCTGGCCCCATGGCCTCGCGCACCTCGCGCAGc                    <  3:169469/149‑1 (MQ=255)                                                                                                                        aaCAGCCAGTTCGGCCCATCCACCCCCTGCTTGGCGGCGAACGCCTTCAGCGCCTCGGGGGTGTCGTTCAGCGGGTCACTGCTGATCGACACGAAGGTCACCTGGGCGGCCAGCGCTGGCCCCATGGcctcgcgc                                >  5:56521/1‑135 (MQ=255)                                                                                                                        aaCAGCCAGTTCGGCCCATCCACCCCCTGCTTGGCGGCGAACGCCTTCAGCGCCTCGGGGGTGTCGTTCAGCGGGTCACTGCTGATCGACACGAAGGTCACCTGGGCGGCCAGCGCTGGCCCCATGGcctcgcgc                                <  6:56521/135‑1 (MQ=255)                                                                                                                          cAGCCAGTTCGGCCCATCCACCCCCTGCTTGGCGGCGAACGCCTTCAGCGCCTCGGGGGTGTCGTTCAGCGGGTCACTGCTGATCGACACGAAGGTCACCTGGGCGGCCAGCGCTGGCCCCATGGCCTCGCGCACCTCGCGCAGCTTGc                >  6:76222/1‑149 (MQ=255)                                                                                                                               aGTTCGGCCCATCCACCCCCTGCTTGGCGGCGAACGCCTTCAGCGCCTCGGGGGTGTCGTTCAGCGGGTCACTGCTGATCGACACGAAGGTCACCTGGGCGGCCAGCGCTGGCCCCATGGCCTCGCGCACCTCGCGCAGCTTGCGGGTg           <  5:76222/149‑1 (MQ=255)                                                                                                                                 ttCGGCCCATCCACCCCCTGCTTGGCGGCGAACGCCTTCAGCGCCTCGGGGGTGTCGTTCAGCGGGTCACTGCTGATCGACACGAAGGTCACCTGGGCGGCCAGCGCTGGCCCCATGGCCTCGCGCACCTCGCGCAGCTTGCGGGTGa          >  8:75227/1‑148 (MQ=255)                                                                                                                                       ccATCCACCCCCTGCTTGGCGGCGAACGCCTTCAGCGCCTCGGGGGTGTCGTTCAGCGGGTCACTGCTGATCGACACGAAGGTCACCCGGGCGGCCAGCGCTGGCCCCATGGCCTCGCGCACCTCGCGCAGCTTGCGGGTGATCAACgg   <  3:33482/149‑1 (MQ=255)                                                                                                                                        cATCCACCCCCTGCTTGGCGGCGAACGCCTTCAGCGCCTCGGGGGTGTCGTTCAGCGGGTCACTGCTGATCGACACGAAGGTCACCTGGGCGGCCAGCGCTGGCCCCATGGCCTCGCGCACCTCGCGCAGCTTGCGGGTGATCAACggg  <  1:110169/149‑1 (MQ=255)                                                                                                                                            |                                                                                                                                                 TCCAGCGTTTACCTGCAACATCACCGGCAATCAGCTGCGTCGAATGCTGCTCGGGACTCGGCAGGAACTGCCCTATACGGCCAAGCACCAGGTCGACATTGGCCTTGTCGCCGGTCAGGAACAGCCAGTTCGGCCCATCCACCCCCTGCTTGGCGGCGAACGCCTTCAGCGCCTCGGGGGTGTCGTTCAGCGGGTCACTGCTGATCGACACGAAGGTCACCTGGGCGGCCAGCGCTGGCCCCATGGCCTCGCGCACCTCGCGCAGCTTGCGGGTGATCAACGGG  >  NC_002947/3951311‑3951594

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.