New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3951450 =	37 (0.880)	4 (0.100)	4/244	NT	11.9%	coding (447/666 nt)	PP_3487	hypothetical protein
	?	NC_002947	3951493 =	24 (0.600)					coding (404/666 nt)	PP_3487	hypothetical protein

CTGCGTCGAATGCTGCTCGGGACTCGGCAGGAACTGCCCTATACGGCCAAGCACCAGGTCGACATTGGCCTTGTCGCCGGTCAGGAACAGCCAGTTCGGCCCATCCACCCCCTGCTTGGCGGCGAACGCCTTCAGCGCCTCGGGGGTGTCGTTCAGCGGGTCACTGCTGATCGACACGAAGGTCACCTGGGCGGCCAGCGCTGGCCCCATGGCCTCGCGCACCTCGCGCAGCTTGCGGGTGATCAACGGGCAGGCATCGGTGCAATGGGTGAAGATCACGTTGAGCAT  >  NC_002947/3951345‑3951632                                                                                                                                                     |                                                                                                                                            ctgcccgttgatcacccgcaagctgcgcgaggtgcgcgaggccatggggccagcgctggccgcccaggtgaccttcgtgtcgatcagcagtgacccgctgaacgaCACCCCCTGCTTGGCGGCGAACGCCTTCAGCGCCTCGGGGgtgt                                                                                                                                             >  5:117832‑M1/106‑149 (MQ=255)    cccgttgatcacccgcaagctgcgcgaggtgcgcgaggccatggggccagcgctggccgcccaggtgaccttcgtgtcgatcagcagtgacccgctgaacgaCACCCCCTGCTTGGCGGCGAACGCCTTCAGCGCCTCGGGGGTGTc                                                                                                                                            >  3:51574‑M1/103‑147 (MQ=255)                 tCGGGACTCGGCAGGAACTGCCCTATACGGCCAAGCACCAGGTCGACATTGGCCTTGTCGCCGGTCAGGAACAGCCAGTTCGGCCCATCCACCCCCTGCTTGGCGGCGAACGCCTTCAGCGCCTCGGGGGTGTCGTTCAGCGGGTCAct                                                                                                                             >  1:108678/1‑149 (MQ=255)                          ggCAGGAACTGCCCTATACGGCCAAGCACCAGGTCGACATTGGCCTTGTCGCCGGTCAGGAACAGCCAGTTCGGCCCATCCACCCCCTGCTTGGCGGCGAACGCCTTCAGCGCCTCGGGGGTGTCGTTCAGCGGGTCACTGCTGATc                                                                                                                      <  5:170264/147‑1 (MQ=255)                                 aCTGCCCTATACGGCCAAGCACCAGGTCGACATTGGCCTTGTCGCCGGTCAGGAACAGCCAGTTCGGCCCATCCACCCCCTGCTTGGCGGCGAACGCCTTCAGCGCCTCGGGGGTGTCGTTCAGCGGGTCACTGCTGATCGACACGAAg                                                                                                             <  4:225551/149‑1 (MQ=255)                                            cGGCCAAGCACCAGGTCGACATTGGCCTTGTCGCCGGTCAGGAACAGCCAGTTCGGCCCATCCACCCCCTGCTTGGCGGCGAACGCCTTCAGCGCCTCGGGGGTGTCGTTCAGCGGGTCACTGCTGATCGACACGAAGGTCACCTggg                                                                                                   <  2:108678/148‑1 (MQ=255)                                               ccattcACCAGGACTACATTGGCCAAGTCGCCGGTCAGGAAACGACAGTTCTGCCCATCCAAACCCTCCATGGCGGCCAACGCATTCATAACCTCGCGGGTCACGAACACAGCGACACTGCAGATCGACACGAAGGTCACCTGggcgt                                                                                                >  2:177212/6‑147 (MQ=255)                                                    cACCAGGTCGACATTGGCCTTGTCGCCGGTCAGGAACAGCCAGTTCGGCCCATCCACCCCCTGCTTGTCGGCGAACGCCTTCAGCGCCTCGGGGGTGTCGTTCAGCGGGTCACTGCTGATCGACACGAAGGTCACCTGGGCGGCCAgcg                                                                                          >  5:192855/1‑149 (MQ=255)                                                     aCCAGGTCGACATTGGCCTTGTCGCCGGTCAGGAACAGCCAGTTCGGCCCATCCACCCCCTGCTTGGCGGCGAACGCCTTCAGCGCCTCGGGGGTGTCGTTCAGCGGGTCACTGCTGATCGACACGAAGGTCACCTGGGCGGCCAgcgc                                                                                         >  7:128015/1‑149 (MQ=255)                                                      ccAGGTCGACATTGGCCTTGTCGCCGGTCAGGAACAGCCAGTGCGGCCCATCCACCCCCTGCTTGGCGGCGAACGCCTTCAGCGCCTCGGGGGTGTCGTTCAGCGGGTCACTGCTGATCGACACGAAGGTCACCTGGGCGGCCAGCGCt                                                                                        <  8:15499/149‑1 (MQ=255)                                                              aCATTGGCCTTGTCGCCGGTCAGGAACAGCCAGTTCGGCCCATCCACCCCCTGCTTGGCGGCGAACGCCTTCAGCGCCTCGGGGGTGTCGTTCAGCGGGTCACTGCTGATCGACACGAAGGTCACCTGGGCGGCCAGCGCTGGCCCCAt                                                                                <  8:128015/149‑1 (MQ=255)                                                                     ccTTGTCGCCGGTCAGGAACAGCCAGTTCGGCCCATCCACCCCCTGCTTGGCGGCGAACGCCTTCAGCGCCTCGGGGGTGTCGTTCAGCGGGTCACTGCTGATCGACACGAAGGTCACCTGGGCGGCCAGCGCTGGCCCCATGGcctcg                                                                         >  2:110169/1‑149 (MQ=255)                                                                                    ggAACAGCCAGTTCGGCCCATCCACCCCCTGCTTGGCGGCGAACGCCTTCAGCGCCTCGGGGGTGTCGTTCAGCGGGTCACTGCTGATCGACACGAAGGTCACCTGGGCGGCCAGCGCTGGCCCCATGGCCTCGCGCACCTCGCGCAGc                                                          <  3:169469/149‑1 (MQ=255)                                                                                      aaCAGCCAGTTCGGCCCATCCACCCCCTGCTTGGCGGCGAACGCCTTCAGCGCCTCGGGGGTGTCGTTCAGCGGGTCACTGCTGATCGACACGAAGGTCACCTGGGCGGCCAGCGCTGGCCCCATGGcctcgcgc                                                                      <  6:56521/135‑1 (MQ=255)                                                                                      aaCAGCCAGTTCGGCCCATCCACCCCCTGCTTGGCGGCGAACGCCTTCAGCGCCTCGGGGGTGTCGTTCAGCGGGTCACTGCTGATCGACACGAAGGTCACCTGGGCGGCCAGCGCTGGCCCCATGGcctcgcgc                                                                      >  5:56521/1‑135 (MQ=255)                                                                                        cAGCCAGTTCGGCCCATCCACCCCCTGCTTGGCGGCGAACGCCTTCAGCGCCTCGGGGGTGTCGTTCAGCGGGTCACTGCTGATCGACACGAAGGTCACCTGGGCGGCCAGCGCTGGCCCCATGGCCTCGCGCACCTCGCGCAGCTTGc                                                      >  6:76222/1‑149 (MQ=255)                                                                                             aGTTCGGCCCATCCACCCCCTGCTTGGCGGCGAACGCCTTCAGCGCCTCGGGGGTGTCGTTCAGCGGGTCACTGCTGATCGACACGAAGGTCACCTGGGCGGCCAGCGCTGGCCCCATGGCCTCGCGCACCTCGCGCAGCTTGCGGGTg                                                 <  5:76222/149‑1 (MQ=255)                                                                                               ttCGGCCCATCCACCCCCTGCTTGGCGGCGAACGCCTTCAGCGCCTCGGGGGTGTCGTTCAGCGGGTCACTGCTGATCGACACGAAGGTCACCTGGGCGGCCAGCGCTGGCCCCATGGCCTCGCGCACCTCGCGCAGCTTGCGGGTGa                                                >  8:75227/1‑148 (MQ=255)                                                                                                     ccATCCACCCCCTGCTTGGCGGCGAACGCCTTCAGCGCCTCGGGGGTGTCGTTCAGCGGGTCACTGCTGATCGACACGAAGGTCACCCGGGCGGCCAGCGCTGGCCCCATGGCCTCGCGCACCTCGCGCAGCTTGCGGGTGATCAACgg                                         <  3:33482/149‑1 (MQ=255)                                                                                                      cATCCACCCCCTGCTTGGCGGCGAACGCCTTCAGCGCCTCGGGGGTGTCGTTCAGCGGGTCACTGCTGATCGACACGAAGGTCACCTGGGCGGCCAGCGCTGGCCCCATGGCCTCGCGCACCTCGCGCAGCTTGCGGGTGATCAACggg                                        <  1:110169/149‑1 (MQ=255)                                                                                                        gacacccccgaggcgctgaaggcgttcgccgccaagcagggggtgTCGTTCAGCGGGTCACTGCTGATCGACACGAAGGTCACCTGGGCGGCCAGCGCTGGCCCCATGGCCTCGCGCACCTCGCGCAGCTTGCGGGTGATCAACggg                                        >  3:51574‑M2/46‑147 (MQ=255)                                                                                                         acacccccgaggcgctgaaggcgttcgccgccaagcagggggtgTCGTTCAGCGGGTCACTGCTGATCGACACGAAGGTCACCTGGGCGGCCAGCGCTGGCCCCATGGCCTCGCGCACCTCGCGCAGCTTGCGGGTGATCAACGggcag                                     >  5:117832‑M2/45‑149 (MQ=255)                                                                                                            cccccgaggcgctgaaggcgttcgccgccaagcagggggtgTCGTTCAGCGGGTCACTGCTGATCGACACGAAGGTCACCTGGGCGGCCAGCGCTGGCCCCATGGCCTCGCGCACCTCGCGCAGCTTGCGGGTGATCAACGggcaggca                                  >  1:238384‑M2/42‑149 (MQ=255)                                                                                                             ccccgaggcgctgaaggcgttcgccgccaagcagggggtgTCGTTCAGCGGGTCACTGCTGATCGACACGAAGGTCACCTGGGCGGCCAGCGCTGGCCCCATGGCCTCGCGCACCTCGCGCAGCTTGCGGGTGATCAACGGGCAGGCAt                                 >  2:41168‑M2/41‑149 (MQ=255)                                                                                                                      ggcggcGAACGCCTTCAGCGCCTCGGGGGTGTCGTTCAGCGGGTCACTGCTGATCGACACGAAGGTCACCTGGGCGGCCAGCGCTGGCCCCATGGCCTCGCGCACCTCGCGCAGCTTGCGGGTGATCAACGGGCAGGCATCGGTGCAAt                        >  3:216568/1‑149 (MQ=255)                                                                                                                         ggcgAACGCCTTCAGCGCCTCGGGGGTGTCGTTCAGCGGGTCACTGCTGATCGACACGAAGGTCACCTGGGCGGCCAGCGCTGGCCCCATGGCCTCGCGCACCTCGCGCAGCTTGCGGGTGATCAACGGGCAGGCATCGGTGCAATg                       <  7:35186/147‑1 (MQ=255)                                                                                                                         ggcgAACGCCTTCAGCGCCTCGGGGGTGTCGTTCAGCGGGTCACTGCTGATCGACACGAAGGTCACCTGGGCGGCCAGCGCTGGCCCCATGGCCTCGCGCACCTCGCGCAGCTTGCGGGTGATCAACGGGCAGGCATCGGTGCAATg                       >  8:35186/1‑147 (MQ=255)                                                                                                                            gAACGCCTTCAGCGCCTCGGGGGTGTCGTTCAGCGGGTCACTGCTGATCGACACGAAGGTCACCTGGGCGGCCAGCGCTGGCCCCATGGCCTCGCGCACCTCGCGCAGCTTGCGGGTGATCAACGGGCAGGCATCGGTGCAATGGGTGa                  <  6:192855/149‑1 (MQ=255)                                                                                                                             aaCGCCTTCAGCGCCTCGGGGGTGTCGTTCAGCGGGTCACTGCTGATCGACACGAAGGTCACCTGGGCGGCCAGCGCTGGCCCCATGGCCTCGCGCACCTCGCGCAGCTTGCGGGTGATCAACGGGCAGGCATCGGTGCAATGGGTGaa                 <  7:75227/149‑1 (MQ=255)                                                                                                                                    tCAGCGCCTCGGGGGTGTCGTTCAGCGGGTCACTGCTGATCGACACGAAGGTCACCTGGGCGGCCAGCGCTGGCCCCATGGCCTCGCGCACCTCGCGCAGCTTGCGGGTGATCAACGGGCAGGCATCGGTGCAATGGGTGAAGATCACg          >  6:183251/1‑149 (MQ=255)                                                                                                                                         aagcagggggtgTCGTTCAGCGGGTCACTGCTGATCGACACGAAGGTCACCTGGGCGGCCAGCGCTGGCCCCATGGCCTCGCGCACCTCGCGCAGCTTGCGGGTGATCAACGGGCAGGCATCGGTGCAATGGGTGAAGATCACGTTGAg     <  6:117832‑M2/137‑1 (MQ=255)                                                                                                                                            tCGGGGGTGTCGTTCAGCGGGTCACTGCTGATCGACACGAAGGTCACCTGGGCGGCCAGCGCTGGCCCCATGGCCTCGCGCACCTCGCGCAGCTTGCGGGTGATCAACGGGCAGGCATCGGTGCAATGGGTGAAGATCACGTTGAGCAt  >  5:275090/1‑149 (MQ=255)                                                                                                                                            tCGGGGGTGTCGTTCAGCGGGTCACTGCTGATCGACACGAAGGTCACCTGGGCGGCCAGCGCTGGCCCCATGGCCTCGCGCACCTCGCGCAGCTTGCGGGTGATCAACGGGCAGGCATCGGTGCAATGGGTGAAGATCACGTTGAGCAt  >  3:181883/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                            CTGCGTCGAATGCTGCTCGGGACTCGGCAGGAACTGCCCTATACGGCCAAGCACCAGGTCGACATTGGCCTTGTCGCCGGTCAGGAACAGCCAGTTCGGCCCATCCACCCCCTGCTTGGCGGCGAACGCCTTCAGCGCCTCGGGGGTGTCGTTCAGCGGGTCACTGCTGATCGACACGAAGGTCACCTGGGCGGCCAGCGCTGGCCCCATGGCCTCGCGCACCTCGCGCAGCTTGCGGGTGATCAACGGGCAGGCATCGGTGCAATGGGTGAAGATCACGTTGAGCAT  >  NC_002947/3951345‑3951632

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.