| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4056575 | 26 (0.620) | 3 (0.080) | 3/242 | NT | 10.3% | coding (1087/2406 nt) | PP_3575 | ferric siderophore receptor |
| ? | NC_002947 | = 4056629 | 28 (0.710) | coding (1033/2406 nt) | PP_3575 | ferric siderophore receptor | |||||
TTGCGCGCGCCAACCGCACCATAGGCCAGCAGCGATTCGCTGATATCGTACTCGGCGTTCAGCGCACCGAAGGTGTCGTTGGTACGCGCCTTGCTCCAGGCCTGGGCGTAGTTGTGGCGTACGTCATTGGCATTGGGCACCTTGGCATTGGCACCGACCAGCACACGCTCCTGCGGGGCGTCAGTGTCGCGTTCGGTGTGGCCAAGGTCTGCCGAGAGACGCAGGCGCTCGCCTCGAAAATCCAGGCCCAGCACCGCCATTTCGCGGTCGACGCGCTGGTGGTCCCATTCGG > NC_002947/4056430‑4056721 | ttGCGCGCGCCAACCGCACCATAGGCCAGCAGCGATTCGCTGATATCGTACTCGGCGTTCAGCGCACCGAAGGTGTCGTTGGTACGCGCCTTGCTCCAGGCCTGGGCGTAGTTGTGGCGTACGTCATTGGCATTGGGCACCttggcatt > 7:36349/1‑149 (MQ=255) gcgcgcCAACCGCACCATAGGCCAGCAGCGATTCGCTGATATCGTACTCGGCGTTCAGCGCACCGAAGGTGTCGTTGGTACGCGCCTTGCTCCAGGCCTGGGCGTAGTTGTGGCGTACGTCATTGGCATTGGGCACCttggcattggca < 1:154914/149‑1 (MQ=255) gcCAACCGCACCATAGGCCAGCAGCGATTCGCTGATATCGTACTCGGCGTTCAGCGCACCGAAGGTGTCGTTGGTACGCGCCTTGCTCCAGGCCTGGGCGTAGTTGTGGCGTACGTCATTGGCATTGGGCACCTTGGCATTGGCACCGa > 3:247073/1‑149 (MQ=255) gcCAACCGCACCATAGGCCAGCAGCGATTCGCTGATATCGTACTCGGCGTTCAGCGCACCGAAGGTGTCGTTGGTACGCGCCTTGCTCCAGGCCTGGGCGTAGTTGTGGCGTACGTCATTGGCATTGGGCACCTTGGC > 7:187120‑M1/1‑138 (MQ=255) gcCAACCGCACCATAGGCCAGCAGCGATTCGCTGATATCGTACTCGGCGTTCAGCGCACCGAAGGTGTCGTTGGTACGCGCCTTGCTCCAGGCCTGGGCGTAGTTGTGGCGTACGTCATTGGCATTGGGCACCTTGGC < 8:187120‑M1/138‑1 (MQ=255) ccAACCGCACCATAGGCCAGCAGCGATTCGCTGATATCGTACTCGGCGTTCAGCGCACCGAAGGTGTCGTTGGTACGCGCCTTGCTCCAGGCCTGGGCGTAGTTGTGGCGTACGTCATTGGCATTGGGCACCTTGGCATTGGCACCGAc < 8:36349/149‑1 (MQ=255) agcGATTCGCTGATATCGTACTCGGCGTTCAGCGCACCGAAGGTGTCGTTGGTACGCGCCTTGCTCCAGGCCTGGGCGTAGTTGTGGCGTACGTCATTGGCATTGGGCACCTTGGCATTGGCACCGACCAGCACACGCTCCTGCGGGGc < 6:115259/149‑1 (MQ=255) gATTCGCTGATATCGTACTCGGCGTTCAGCGCACCGAAGGTGTCGTTGGTACGCGCCTTGCTCCAGGCCTGGGCGTAGTTGTGGCGTACGTCATTGGCATTGGGCACCttggcattg < 3:193378/117‑1 (MQ=255) gATTCGCTGATATCGTACTCGGCGTTCAGCGCACCGAAGGTGTCGTTGGTACGCGCCTTGCTCCAGGCCTGGGCGTAGTTGTGGCGTACGTCATTGGCATTGGGCACCttggcattg > 4:193378/1‑117 (MQ=255) cTGATATCGTACTCGGCGTTCAGCGCACCGAAGGTGTCGTTGGTACGCGCCTTGCTCCAGGCCTGGGCGTAGTTGTGGCGTACGTCATTGGCATTGGGCACCTTGGCATTGGCACCGACCAGCACACGCTCCTGCGGGGCGTCAGTGTc < 4:247073/149‑1 (MQ=255) atatCGTACTCGGCGTTCAGCGCACCGAAGGTGTCGTTGGTACGCGCCTTGCTCCAGGCCTGGGCGTAGTTGTGGCGTACGTCATTGGCATTGGGCACCttggcattggca > 4:51864/1‑111 (MQ=255) atatCGTACTCGGCGTTCAGCGCACCGAAGGTGTCGTTGGTACGCGCCTTGCTCCAGGCCTGGGCGTAGTTGTGGCGTACGTCATTGGCATTGGGCACCttggcattggca < 3:51864/111‑1 (MQ=255) ttCAGCGCACCGAAGGTGTCGTTGGTACGCGCCTTGCTCCAGGCCTGGGCGTAGTTGTGGCGTACGTCATTGGCATTGGGCACCTTGGCATTGGCACCGACCAGCACACGCTCCTGCGGGGCGTc > 8:120474/1‑125 (MQ=255) ttCAGCGCACCGAAGGTGTCGTTGGTACGCGCCTTGCTCCAGGCCTGGGCGTAGTTGTGGCGTACGTCATTGGCATTGGGCACCTTGGCATTGGCACCGACCAGCACACGCTCCTGCGGGGCGTc < 7:120474/125‑1 (MQ=255) aGCGCACCGAAGGTGTCGTTGGTACGCGCCTTGCTCCAGGCCTGGGCGTAGTTGTGGCGTACGTCATTGGCATTGGGCACCTTGGCATTGGCACCGACCAGCACACGCTCCTGCGGGGCGTCAGTGTCGCGTTCGGTGTGgccaaggt > 2:62349‑M2/1‑140 (MQ=255) aGCGCACCGAAGGTGTCGTTGGTACGCGCCTTGCTCCAGGCCTGGGCGTAGTTGTGGCGTACGTCATTGGCATTGGGCACCTTGGCATTGGCACCGACCAGCACACGCTCCTGCGGGGCGTCAGTGTCGCGTTCGGTGTGgccaaggt > 7:236443‑M2/1‑140 (MQ=255) gcgcACCGAAGGTGTCGTTGGTACGCGCCTTGCTCCAGGCCTGGGCGTAGTTGTGGCGTACGTCATTGGCATTGGGCACCTTGGCcacaccgaacgcgacactgacgccccgcaggagcgtgtgctggtcggtgccaatgccaaggtgc < 2:165932‑M1/149‑65 (MQ=255) gcgcACCGAAGGTGTCGTTGGTACGCGCCTTGCTCCAGGCCTGGGCGTAGTTGTGGCGTACGTCATTGGCATTGGGCACCTTGGCATTGGCACCGACCAGCACACGCTCCTGCGGGGCGTCAGTGTCGCGTTCGGTGTGgccaaggtat < 3:11845‑M2/149‑11 (MQ=255) aCCGAAGGTGTCGTTGGTACGCGCCTTGCTCCAGGCCTGGGCGTAGTTGTGGCGTACGTCATTGGCATTGGGCACCTTGGCATTGGCACCGACCAGCACACGCTCCTGCGGGGCGTCAGTGTCGCGTTCGGTGTGGCCAAGGTCTGcc > 2:155870/1‑148 (MQ=255) aCCGAAGGTGTCGTTGGTACGCGCCTTGCTCCAGGCCTGGGCGTAGTTGTGGCGTACGTCATTGGCATTGGGCACCTTGGCATTGGCACCGACCAGCACACGCTCCTGCGGGGCGTCAGTGTCGCGTTCGGTGTGGCCAAGGTCTGcc > 3:135566/1‑148 (MQ=255) cGAAGGTGTCGTTGGTACGCGCCTTGCTCCAGGCCTGGGCGTAGTTGTGGCGTACGTCATTGGCATTGGGCACCTTGGCATTGGCACCGACCAGCACACGCTCCTGCGGGGCGTCAGTGTCGCGTTCGGTGTGg < 6:249839‑M2/134‑2 (MQ=255) cGAAGGTGTCGTTGGTACGCGCCTTGCTCCAGGCCTGGGCGTAGTTGTGGCGTACGTCATTGGCATTGGGCACCTTGGCATTGGCACCGACCAGCACACGCTCCTGCGGGGCGTCAGTGTCGCGTTCGGTGTGg > 5:249839‑M2/1‑133 (MQ=255) tCGGTGGTACGCGCCTTGCTCCAGGCCTGGGCGTAGTTGTGGCGTACGTCATTGGCATTGGGCACCTTGGCATTGGCACCGACCAGCACACGCTCCTGCGGGGCGTCAGTGTCGCGTTCGGTGTGGCCAAGGTCTGCCGAGAGACGCAg < 5:271851/149‑1 (MQ=255) gTTGGTACGCGCCTTGCTCCAGGCCTGGGCGTAGTTGTGGCGTACGTCATTGGCATTGGGCACCTTGGCATTGGCACCGACCAGCACACGCTCCTGCGGGGCGTCAGTGTCGCGTTCGGTGTGGCCAAGGTCTGCCGAGAGACGCAGgc > 2:37407/1‑149 (MQ=255) tCCAGGCCTGGGCGTAGTTGTGGCGTACGTCATTGGCATTGGGCACCTTGGCcacaccgaacgcgacactgacgccccgcaggagcgtgtgctggtcggtgccaatgccaaggtg > 8:49858‑M1/1‑52 (MQ=255) tCCAGGCCTGGGCGTAGTTGTGGCGTACGTCATTGGCATTGGGCACCTTGGCcacaccgaacgcgacactgacgccccgcaggagcgtgtgctggtcggtgccaatgccaaggtg < 7:49858‑M1/115‑64 (MQ=255) cAGGCCTGGGCGTAGTTGTGGCGTACGTCATTGGCATTGGGCACCTTGGCATTGGCACCGACCAGCACACGCTCCTGCGGGGCGTCAGTGTCGCGTTCGGTGTGGCCAAGGTCTGCCGAGAGACGCAGGCGCTCGCCTCGAAAATCCa < 1:155870/148‑1 (MQ=255) gCCTGGGCGTAGTTGTGGCGTACGTCATTGGCATTGGGCACCTTGGCATTGGCACCGACCAGCACACGCTCCTGCGGGGCGTCAGTGTCGCGTTCGGTGTGGCCAAGGTCTGCCGAGAGACGCAGGCGCTCGCCTCGAAAATCCAGGcc > 8:120533/1‑149 (MQ=255) ccTGGGCGTAGTTGTGGCGTACGTCATTGGCATTGGGCACCTTGGCATTGGCACCGACCAGCACACGCTCCTGCGGGGCGTCAGTGTCGCGTTCGGTGTGGCCAAGGTCTGCCGAGAGACGCAGGCGCTCGCCTCGAAAATCCAGGcc > 8:58427/1‑148 (MQ=255) gtgGCGTACGTCATTGGCATTGGGCACCTTGGCATTGGCACCGACCAGCACACGCTCCTGCGGGGCGTCAGTGTCGCGTTCGGTGTGGCCAAGGTCTGCCGAGAGACGCAGGCGCTCGCCTCGAAAATCCAGGcc < 6:174782/135‑1 (MQ=255) gtgGCGTACGTCATTGGCATTGGGCACCTTGGCATTGGCACCGACCAGCACACGCTCCTGCGGGGCGTCAGTGTCGCGTTCGGTGTGGCCAAGGTCTGCCGAGAGACGCAGGCGCTCGCCTCGAAAATCCAGGcc > 5:174782/1‑135 (MQ=255) gCGTACGTCATTGGCATTGGGCACCTTGGCATTGGCACCGCCCAGCACACGCTCCTGCGGGGCGTCAGTGTCGCGTTCGGTGTGGCCAAGGTCTGCCGAGAGACGCAGGCGCTCGCCTCGAAAATCCAGGCCCAGCACCGCCATTTcgc > 2:25741/1‑149 (MQ=255) gCGTACGTCATTGGCATTGGGCACCTTGGCATTGGCACCGACCAGCACACGCTCCTGCGGGGCGTCAGTGTCGCGTTCGGTGTGGCCAAGGTCTGCCGAGAGACGCAGGCGCTCGCCTCGAAAATCCAGGccc < 5:58341/133‑1 (MQ=255) gCGTACGTCATTGGCATTGGGCACCTTGGCATTGGCACCGACCAGCACACGCTCCTGCGGGGCGTCAGTGTCGCGTTCGGTGTGGCCAAGGTCTGCCGAGAGACGCAGGCGCTCGCCTCGAAAATCCAGGccc > 6:58341/1‑133 (MQ=255) gCGTACGTCATTGGCATTGGGCACCTTGGCATTGGCACCGACCAGCACACGCTCCTGCGGGGCGTCAGTGTCGCGTTCGGTGTGGCCAAGGTCTGCCGAGAGACGCAGGCGCTCGCCTCGAAAATCCAGGCCCAGCACCGCCATTTcgc < 7:58427/149‑1 (MQ=255) gTACGTCATTGGCATTGGGCACCTTGGGATTGGCACCGACCAGCACACGCTCCTGCGGGGCGTCAGTGTCGCGTTCGGTGTGGCCAAGGTCTGCCGAGAGACGCAGGCGCTCGCCTCGAAAATCCAGGCCCAGCACCGCCATTTCGCgg > 6:4809/1‑149 (MQ=255) gcattggGCACCTTGGCATTGGCACCGACCAGCACACGCTCCTGCGGGGCGTCAGTGTCGCGTTCGGTGTGGCCAAGGTCTGCCGAGAGACGCAGGCGCTCGCCTCGAAAATCCAGGCCCAGCACCGCCATTTcgc < 1:195018/136‑1 (MQ=255) gcattggGCACCTTGGCATTGGCACCGACCAGCACACGCTCCTGCGGGGCGTCAGTGTCGCGTTCGGTGTGGCCAAGGTCTGCCGAGAGACGCAGGCGCTCGCCTCGAAAATCCAGGCCCAGCACCGCCATTTcgc > 2:195018/1‑136 (MQ=255) gcattggGCACCTTGGCATTGGCACCGACCAGCACACGCTCCTGCGGGGCGTCAGTGTCGCGTTCGGTGTGGCCAAGGTCTGCCGAGAGACGCAGGCGCTCGCCTCGAAAATCCAGGCCCAGCACCGCCATTTCGCGGTCGACGCGCtg > 2:96605/1‑149 (MQ=255) gCACCTTGGCATTGGCACCGACCAGCACACGCTCCTGCGGGGCGTCAGTGTCGCGTTCGGTGTGgccaaggtgcccaatgccaatgacgtacgccacaactacgcccaggcctggagcaaggcgcgtaccaacgacaccttcggtgcgc < 2:165932‑M2/149‑86 (MQ=255) ataccTTGGCcacaccgaacgcgacactgacgccccgcaggagcgtgtgctggtcggtgccaatgccaaggtgcccaatgccaatgacgtacgccacaactacgcccaggcctggagcaaggcgcgtaccaacgacaccttcggtgcgc < 3:11845‑M1/147‑140 (MQ=255) cACCTTGGCATTGGCACCGACCAGCACACGCTCCTGCGGGGCGTCAGTGTCGCGTTCGGTGTGgccaaggtgcccaatgccaatgacgtacgccacaactacgcccaggcctgga < 7:49858‑M2/115‑53 (MQ=255) cACCTTGGCATTGGCACCGACCAGCACACGCTCCTGCGGGGCGTCAGTGTCGCGTTCGGTGTGgccaaggtgcccaatgccaatgacgtacgccacaactacgcccaggcctgga > 8:49858‑M2/1‑63 (MQ=255) aCCTTGGCcacaccgaacgcgacactgacgccccgcaggagcgtgtgctggtcggtgccaatgccaaggtgcccaatgccaatgacgtacgccacaactacgcccaggcctggagcaaggcgcgtaccaacgacaccttcggtgcgct > 2:62349‑M1/1‑8 (MQ=255) aCCTTGGCcacaccgaacgcgacactgacgccccgcaggagcgtgtgctggtcggtgccaatgccaaggtgcccaatgccaatgacgtacgccacaactacgcccaggcctggagcaaggcgcgtaccaacgacaccttcggtgcgct > 7:236443‑M1/1‑8 (MQ=255) tggcattggcaCCGACCAGCACACGCTCCTGCGGGGCGTCAGTGTCGCGTTCGGTGTGg < 5:231478‑M2/59‑2 (MQ=255) tggcattggcaCCGACCAGCACACGCTCCTGCGGGGCGTCAGTGTCGCGTTCGGTGTGg > 6:231478‑M2/1‑58 (MQ=255) gcattggcaCCGACCAGCACACGCTCCTGCGGGGCGTCAGTGTCGCGTTCGGTGTGGCCAAGGTCTGCCGAGAGACGCAGGCGCTCGCCTCGAAAATCCAGGCCCAGCACCGCCATTTCGCGGTCGACGCGCTGGTGGTCCCATTCgg < 1:37407/148‑1 (MQ=255) ccacaccgaacgcgacactgacgccccgcaggagcgtgtgctggtcggtgccaatgccaaggtgcccaatgccaatgacgtacgccacaactacgcccaggcctggagcaaggcgcgtaccaacgacaccttcg < 6:249839‑M1/134‑134 (MQ=255) ccacaccgaacgcgacactgacgccccgcaggagcgtgtgctggtcggtgccaatgccaaggtgcccaatgccaatgacgtacgccacaactacgcccaggcctggagcaaggcgcgtaccaacgacaccttcg > 5:249839‑M1/1‑1 (MQ=255) ccacaccgaacgcgacactgacgccccgcaggagcgtgtgctggtcggtgccaatgcca < 5:231478‑M1/59‑59 (MQ=255) ccacaccgaacgcgacactgacgccccgcaggagcgtgtgctggtcggtgccaatgcca > 6:231478‑M1/1‑1 (MQ=255) | TTGCGCGCGCCAACCGCACCATAGGCCAGCAGCGATTCGCTGATATCGTACTCGGCGTTCAGCGCACCGAAGGTGTCGTTGGTACGCGCCTTGCTCCAGGCCTGGGCGTAGTTGTGGCGTACGTCATTGGCATTGGGCACCTTGGCATTGGCACCGACCAGCACACGCTCCTGCGGGGCGTCAGTGTCGCGTTCGGTGTGGCCAAGGTCTGCCGAGAGACGCAGGCGCTCGCCTCGAAAATCCAGGCCCAGCACCGCCATTTCGCGGTCGACGCGCTGGTGGTCCCATTCGG > NC_002947/4056430‑4056721 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |