New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4124867 =	36 (0.850)	3 (0.080)	3/244	NT	8.6%	coding (1342/1746 nt)	PP_3628	choline/carnitine/betaine transporter family protein
	?	NC_002947	4124918 =	30 (0.750)					coding (1393/1746 nt)	PP_3628	choline/carnitine/betaine transporter family protein

CATCGAGGCCGTGCGCGAGGGCGCCTTCCAGCTGGCCAACGGTGCGGTCAACAGTAATCACGCGCTGTACCAGTTGCTGGACAGCTACCCGCTGGCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCGGTACGGTGGCGGCCATCATGCTGGCGATCGGCGACCCAGGTAACC  >  NC_002947/4124719‑4125008                                                                                                                                                     |                                                                                                                                              cgaatggcaaggccacgacgatggtcaggttctgcagcccggtcagtgcctcgccagggttacctgggtcgccgatcgccagcatgatggccgccaccgtaccggtcagcgtcccccagaaaatcactgtgcgtcgcgatggcgcggtg                                                                                                                                               >  5:41039‑M1/149‑149 (MQ=255)   aatggcaaggccacgacgatggtcaggttctgcagcccggtcagtgcctcgccagggttacctgggtcgccgatcgccagcatgatggccgccaccgtaccggtcagcgtcccccagaaaatcactgtgcgtcgcgatggcgcggtggt                                                                                                                                             >  4:170148‑M1/147‑149 (MQ=255)     gAGGCCGTGCGCGAGGGCGCCTTCCAGCTGGCCAACGGTGCGGTCAACAGTAATCACGCGCTGTACCAGTTGCTGGACAGCTACCCGCTGGCCTCGGCAACCGCGGTGCTGGTGATGCTCCTGGTGGGCATCTTTTTTGTTTCGGGTGc                                                                                                                                           >  8:117697/1‑149 (MQ=255)                    ggCGCCTTCCAGCTGGCCAACGGTGCGGTCAACAGTAATCACGCGCTGTACCAGTTGCTGGACAGCTACCCGCTGGCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCt                                                                                                                            >  6:38025/1‑149 (MQ=255)                              aGCTGGCCAACGGTGCGGTCAACAGTAATCACGCGCTGTACCAGTTGCTGGACAGCTACCCGCTGGCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTg                                                                                                                           <  6:71275/140‑1 (MQ=255)                              aGCTGGCCAACGGTGCGGTCAACAGTAATCACGCGCTGTACCAGTTGCTGGACAGCTACCCGCTGGCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTg                                                                                                                           >  5:71275/1‑140 (MQ=255)                                      aaCGGTGCGGTCAACAGTAATCACGCGCTGTACCAGTTGCTGGACAGCTACCCGCTGGCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTc                                                                                                          <  5:38025/149‑1 (MQ=255)                                          gTGCGGTCAACAGTAATCACGCGCTGTACCAGTTGCTGGACAGCTACCCGCTGGCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGaa                                                                                                      >  7:58556/1‑149 (MQ=255)                                               gTCAACAGTAATCACGCGCTGTACCAGTTGCTGGACAGCTACCCGCTGGCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACgg                                                                                                 <  6:32973/149‑1 (MQ=255)                                                     gccagggttacctgggtcgccgatcgccagcatgatggccgccaccgtaccggtcagcgtcccccagaaaatcactgtgcgtcgcgatggcgcggtGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGcaccac                                                                                           >  8:8803‑M1/97‑149 (MQ=255)                                                        aaTCACGCGCTGTACCAGTTGCTGGACAGCTACCCGCTGGCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACcgc                                                                                        >  6:81642/1‑149 (MQ=255)                                                                        aGTTGCTGGACAGCTACCCGCTGGCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGca                                                                          >  2:129890/1‑147 (MQ=255)                                                                             cTGGACAGCTACCCGCTGGCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGAt                                                                   >  3:86799/1‑149 (MQ=255)                                                                                gACAGCTACCCGCTGGCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCCCCACCGCGCCATCGCGCCGCACAGTGAgtt                                                                 >  4:176519/1‑148 (MQ=255)                                                                                 aCAGCTACCCGCTGGCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTc                                                               >  4:141814/1‑149 (MQ=255)                                                                                 aCAGCTACCCGCTGGCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTc                                                               >  8:60532/1‑149 (MQ=255)                                                                                    gCTACCCGCTGGCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTgg                                                            <  7:186286/149‑1 (MQ=255)                                                                                     cTACCCGCTGGCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTggg                                                           <  7:60532/149‑1 (MQ=255)                                                                                           gCTGGCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGAGTTTCTGGCGGACGc                                                     >  8:193315/1‑149 (MQ=255)                                                                                               gCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCgg                                                                                                        <  3:99339/94‑1 (MQ=255)                                                                                               gCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCgg                                                                                                        >  4:99339/1‑94 (MQ=255)                                                                                               gCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGAc                                                 <  4:86799/149‑1 (MQ=255)                                                                                               gCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGAc                                                 >  1:36521/1‑149 (MQ=255)                                                                                                 cTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCg                                               <  5:81642/149‑1 (MQ=255)                                                                                                  tCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCgg                                              >  3:145027/1‑149 (MQ=255)                                                                                                   cGGCAACCTCGGGGCTGGTGAGGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGATCACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCGGt                                             <  7:193315/149‑1 (MQ=255)                                                                                                    taccggtcagcgtcccccagaaaatcactgtgcgtcgcgatggcgcggtGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGcacca                                                                                            <  1:21627‑M1/52‑1 (MQ=255)                                                                                                    taccggtcagcgtcccccagaaaatcactgtgcgtcgcgatggcgcggtGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGcacca                                                                                            >  2:21627‑M1/50‑101 (MQ=255)                                                                                                      cAACCTCGGTGCTGGTGATGATGCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACATTGATTTTCTGGGGGACGCTGACCGGTACg                                          <  7:117697/149‑1 (MQ=255)                                                                                                      cAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGc                                                                           <  8:172278/116‑1 (MQ=255)                                                                                                      cAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGc                                                                           >  7:172278/1‑116 (MQ=255)                                                                                                         ccTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCGGTACGGTg                                       <  1:129890/149‑1 (MQ=255)                                                                                                             ggTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCGGTACGGTggcgg                                   <  2:36521/149‑1 (MQ=255)                                                                                                             ggTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCGGTACGGTggcgg                                   <  3:141814/149‑1 (MQ=255)                                                                                                                     tgatgaTCCTGGTGGGCAGCTTTTTTGTTTCGGGTGCCGACGCCGCCGCGCTGGTGAGGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCGGTACGGTGGCGGCCATCATg                           <  3:176519/149‑1 (MQ=255)                                                                                                                      gaacatCCTGGTGGGCATCTTTTATGTTTCGCGTGCCGACGCCGCATCGCTGGTGATGGGCACACTGTCTGAACACGGCACCACCGCGCCAACCCGACGCACACTGATTTTCTGGGGGACGCTCACCGGTACGGTGGCGCCcaacatcc                          >  2:206350/5‑147 (MQ=255)                                                                                                                           tCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCGGTACGGTGGCGGCCATCATGCTGGc                      >  2:108816/1‑148 (MQ=255)                                                                                                                                gtggGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGt                                                                                                           <  7:79043/58‑1 (MQ=255)                                                                                                                                gtggGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGt                                                                                                           >  8:79043/1‑58 (MQ=255)                                                                                                                                          tttttGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCGGTACGGTGGCGGCCATCATGCTGGCGATCGGCGACCCAgg       >  7:158961/1‑148 (MQ=255)                                                                                                                                          tttttGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCGGTACGGTGGCGGCCATCATGCTGGCGATCGGCGACCCAgg       <  4:145027/148‑1 (MQ=255)                                                                                                                                               gTTTCGGGTGCCGACGCCGCCTGGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGTCACTGACCGGTACGGTGGCGGCCATCATGCTGGCGATCGGCGACCCAGGTAAcc  <  1:206350/148‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                              CATCGAGGCCGTGCGCGAGGGCGCCTTCCAGCTGGCCAACGGTGCGGTCAACAGTAATCACGCGCTGTACCAGTTGCTGGACAGCTACCCGCTGGCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCGGTACGGTGGCGGCCATCATGCTGGCGATCGGCGACCCAGGTAACC  >  NC_002947/4124719‑4125008

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.