New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4124867 =	36 (0.850)	3 (0.080)	3/244	NT	8.6%	coding (1342/1746 nt)	PP_3628	choline/carnitine/betaine transporter family protein
	?	NC_002947	4124918 =	30 (0.750)					coding (1393/1746 nt)	PP_3628	choline/carnitine/betaine transporter family protein

AGTAATCACGCGCTGTACCAGTTGCTGGACAGCTACCCGCTGGCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCGGTACGGTGGCGGCCATCATGCTGGCGATCGGCGACCCAGGTAACCCTGGCGAGGCACTGACCGGGCTGCAGAACCTGACCATCGTCGTGGCCTTGCCATTCG  >  NC_002947/4124771‑4125065                                                                                                                                                    |                                                                                                                                                    gccagggttacctgggtcgccgatcgccagcatgatggccgccaccgtaccggtcagcgtcccccagaaaatcactgtgcgtcgcgatggcgcggtGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGcaccac                                                                                                                                                    >  8:8803‑M1/97‑149 (MQ=255)    aaTCACGCGCTGTACCAGTTGCTGGACAGCTACCCGCTGGCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACcgc                                                                                                                                                 >  6:81642/1‑149 (MQ=255)                    aGTTGCTGGACAGCTACCCGCTGGCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGca                                                                                                                                   >  2:129890/1‑147 (MQ=255)                         cTGGACAGCTACCCGCTGGCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGAt                                                                                                                            >  3:86799/1‑149 (MQ=255)                            gACAGCTACCCGCTGGCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCCCCACCGCGCCATCGCGCCGCACAGTGAgtt                                                                                                                          >  4:176519/1‑148 (MQ=255)                             aCAGCTACCCGCTGGCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTc                                                                                                                        >  8:60532/1‑149 (MQ=255)                             aCAGCTACCCGCTGGCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTc                                                                                                                        >  4:141814/1‑149 (MQ=255)                                gCTACCCGCTGGCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTgg                                                                                                                     <  7:186286/149‑1 (MQ=255)                                 cTACCCGCTGGCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTggg                                                                                                                    <  7:60532/149‑1 (MQ=255)                                       gCTGGCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGAGTTTCTGGCGGACGc                                                                                                              >  8:193315/1‑149 (MQ=255)                                           gCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGAc                                                                                                          <  4:86799/149‑1 (MQ=255)                                           gCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGAc                                                                                                          >  1:36521/1‑149 (MQ=255)                                             cTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCg                                                                                                        <  5:81642/149‑1 (MQ=255)                                              tCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCgg                                                                                                       >  3:145027/1‑149 (MQ=255)                                               cGGCAACCTCGGGGCTGGTGAGGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGATCACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCGGt                                                                                                      <  7:193315/149‑1 (MQ=255)                                                taccggtcagcgtcccccagaaaatcactgtgcgtcgcgatggcgcggtGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGcacca                                                                                                                                                     >  2:21627‑M1/50‑101 (MQ=255)                                                taccggtcagcgtcccccagaaaatcactgtgcgtcgcgatggcgcggtGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGcacca                                                                                                                                                     <  1:21627‑M1/52‑1 (MQ=255)                                                  cAACCTCGGTGCTGGTGATGATGCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACATTGATTTTCTGGGGGACGCTGACCGGTACg                                                                                                   <  7:117697/149‑1 (MQ=255)                                                  cAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGc                                                                                                                                    >  7:172278/1‑116 (MQ=255)                                                  cAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGc                                                                                                                                    <  8:172278/116‑1 (MQ=255)                                                     ccTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCGGTACGGTg                                                                                                <  1:129890/149‑1 (MQ=255)                                                         ggTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCGGTACGGTggcgg                                                                                            <  3:141814/149‑1 (MQ=255)                                                         ggTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCGGTACGGTggcgg                                                                                            <  2:36521/149‑1 (MQ=255)                                                                 tgatgaTCCTGGTGGGCAGCTTTTTTGTTTCGGGTGCCGACGCCGCCGCGCTGGTGAGGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCGGTACGGTGGCGGCCATCATg                                                                                    <  3:176519/149‑1 (MQ=255)                                                                  gaacatCCTGGTGGGCATCTTTTATGTTTCGCGTGCCGACGCCGCATCGCTGGTGATGGGCACACTGTCTGAACACGGCACCACCGCGCCAACCCGACGCACACTGATTTTCTGGGGGACGCTCACCGGTACGGTGGCGCCcaacatcc                                                                                   >  2:206350/5‑147 (MQ=255)                                                                       tCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCGGTACGGTGGCGGCCATCATGCTGGc                                                                               >  2:108816/1‑148 (MQ=255)                                                                                      tttttGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCGGTACGGTGGCGGCCATCATGCTGGCGATCGGCGACCCAgg                                                                <  4:145027/148‑1 (MQ=255)                                                                                      tttttGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCGGTACGGTGGCGGCCATCATGCTGGCGATCGGCGACCCAgg                                                                >  7:158961/1‑148 (MQ=255)                                                                                           gTTTCGGGTGCCGACGCCGCCTGGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGTCACTGACCGGTACGGTGGCGGCCATCATGCTGGCGATCGGCGACCCAGGTAAcc                                                           <  1:206350/148‑1 (MQ=255)                                                                                               gtggtgccgtgttccgacagcgtgcccatcaccagcgaggcggcgtcggcaccACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCGGTACGGTGGCGGCCATCATGCTGGCGATCGGCGACCCAGGTAACCCTGGc                                                      >  8:8803‑M2/54‑149 (MQ=255)                                                                                                tggtgccgtgttccgacagcgtgcccatcaccagcgaggcggcgtcggcaccACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCGGTa                                                                                                     >  2:21627‑M2/53‑101 (MQ=255)                                                                                                tggtgccgtgttccgacagcgtgcccatcaccagcgaggcggcgtcggcaccACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCGGTa                                                                                                     <  1:21627‑M2/49‑1 (MQ=255)                                                                                                  GTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCGGTACGGTGGCGGCCATCATGCTGGCGATCGGCGACCCAGGTAACCCTGGCGAg                                                   <  5:437‑M1/149‑1 (MQ=255)                                                                                                   TGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCGGTACGGTGGCGGCCATCATGCTGGCGATCGGCGACCCAGGTAACCCTGGCGAgg                                                  >  8:58556‑M1/1‑149 (MQ=255)                                                                                                        aCGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCGGTACGGTGGCGGCCATCATGCTGGCGATCGGCGACCCAGGTAACCCTGGCGAGGCACt                                              >  7:153689/1‑148 (MQ=255)                                                                                                        aCGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCGGTACGGTGGCGGCCATCATGCTGGCGATCGGCGACCCAGGTAACCCTGGCGAGGCACt                                              >  3:116010/1‑148 (MQ=255)                                                                                                                          tGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCGGTACGGTGGCGGCCATCATGCTGGCGATCGGCGACCCAGGTAACCCTGGCGAGGCACTGACCGGGCTGCAGAACCTg                           <  1:108816/149‑1 (MQ=255)                                                                                                                                   tGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCGGTACGGTGGCGGCCATCATGCTGGCGATCGGCGACCCAGGTAACCCTGGCGAGGCACTGACCGGGCTGCAGAACCTGACCAtcgtc                  >  5:75291/1‑149 (MQ=255)                                                                                                                                       ggAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCGGTACGGTGGCGGCCATCATGCTGGCGATCGGCGACCCAGGTAACCCTGGCGAGGCACTGACCGGGCTGCAGAACCTGACCATCGTCGTgg              <  4:116010/149‑1 (MQ=255)                                                                                                                                                 accACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCGGTACGGTGGCGGCCATCATGCTGGCGATCGGCGACCCAGGTAACCCTGGCGAGGCACTGACCGGGCTGCAGAACCTGACCATCGTCGTGGCCTTGCCAtt    >  4:170148‑M2/4‑149 (MQ=255)                                                                                                                                                   cACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCGGTACGGTGGCGGCCATCATGCTGGCGATCGGCGACCCAGGTAACCCTGGCGAGGCACTGACCGGGCTGCAGAACCTGACCATCGTCGTGGCCTTGCCATTCg  >  5:41039‑M2/2‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                    AGTAATCACGCGCTGTACCAGTTGCTGGACAGCTACCCGCTGGCCTCGGCAACCTCGGTGCTGGTGATGATCCTGGTGGGCATCTTTTTTGTTTCGGGTGCCGACGCCGCCTCGCTGGTGATGGGCACGCTGTCGGAACACGGCACCACCGCGCCATCGCGACGCACAGTGATTTTCTGGGGGACGCTGACCGGTACGGTGGCGGCCATCATGCTGGCGATCGGCGACCCAGGTAACCCTGGCGAGGCACTGACCGGGCTGCAGAACCTGACCATCGTCGTGGCCTTGCCATTCG  >  NC_002947/4124771‑4125065

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.