| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4149705 = | 38 (0.900) | 4 (0.100) | 4/242 | NT | 9.5% | coding (157/453 nt) | PP_3654 | leucine‑responsive regulatory protein |
| ? | NC_002947 | 4149783 = | 41 (1.040) | coding (235/453 nt) | PP_3654 | leucine‑responsive regulatory protein | |||||
AACTGATCGAAAAATCCTTGCCGAGCTGCAAAAAGACGGGCGCCTGTCGGTAACCGAACTGGCCGACCGCGTAGGGCTCAGCCTGTCACCCTGCCATCGGCGCTTGAAGGCACTGGAAGAGTCCGGAGCCATTCTGGGCTATCACGCACGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACTTTGAAACGGCACTGGCGCAGATCCCGCAGATTGTCGAAGCGCAGCGGCTGTTCGG > NC_002947/4149557‑4149847 | gaatactggtcaggtgctcgtcatacagcttctgaaacgccggcaggtccttggctaacacatgcagcaggtagtccgggtcgccgaacagccgctgcgcttcgacaatctgccggatctgcgccagtgccgattcaaagtcccccacc < 2:79394‑M1/1‑1 (MQ=255)aaCTGATCGAAAAATCCTTGCCGAGCTGCAAAAAGACGGGCGCCTGTCGGTAACCGAACTGGCCGACCGCGTAGGGCTCAGCCTGTCACCCTGCCATCGGCGCTTGAAGGCACTGGAAGAGTCCGGAGCCATTCTGGGCTATcacgcac > 7:117721/1‑149 (MQ=255) tggtcaggtgctcgtcatacagcttctgaaacgccggcaggtccttggctaccacatgcagcaggtaatccgggtcgccgaacagccgctgcgcttcgacaatctgcgggatctgcgccagtgccgtttcaaagtccgccacCGGCTgg < 6:244270‑M1/7‑1 (MQ=255) gtcaggtgctcgtcatacagcttctgaaacgccggcaggtccttggctaccacatgcagcaggtaatccgggtcgccgaacagccgctgcgcttcgacaatctgcgggatctgcgccagtgccgtttcaaagtccgccacCGGCTgg > 7:208422‑M1/141‑147 (MQ=255) gCTGCAAAAAGACGGGCGCCTGTCGGTAACCGAACTGGCCGACCGCGTAGGGCTCAGCCTGTCACCCTGCCATCGGCGCTTGAAGGCACTGGAAGAGTCCGGAGCCATTCTGGGCTATCACGCACGGCTGGCACCGAGCGCCCTTGGGc < 6:56026/149‑1 (MQ=255) gCAAAAAGACGGGCGCCTGTCGGTAACCGAACTGGCCGACCGCGTAGGGCTCAGCCTGTCACCCTGCCATCGGCGCTTGAAGGCACTGGAAGAGTCCGGAGCCATTCTGGGCTATCACGCACGGCTGGCACCGAGCGCCCTTGGGCTg > 7:94037/1‑148 (MQ=255) cttctgaaacgccggcaggtccttggctaccacatgcagcaggtaatccgggtcgccgaacagccgctgcgcttcgacaatctgcgggatctgcgccagtgccgtttcaaagtccgccacCGGCTGGCACCGAGCGCCCTTGGGCTg < 7:51013‑M1/27‑1 (MQ=255) cAAAAAGACGGGCGCCTGTCGGTAACCGAACTGGCCGACCGCGTAGGGCTCAGCCTGTCACCCTGCCATCGGCGCTTGAAGGCACTGGAAGAGTCCGGAGCCATTCTGGGCTATCACGCACGGCTGGCACCGAGCGCCCTTGGGCTGaa > 5:48893/1‑149 (MQ=255) cAAAAAGACGGGCGCCTGTCGGTAACCGAACTGGCCGACCGCGTAGGGCTCAGCCTGTCACCCTGCCATCGGCGCTTGAAGGCACTGGAAGAGTCCGGAGCCATTCTGGGCTATCACGCACGGCTGGCACCGAGCGCCCTTGGGCTGaa > 5:159329/1‑149 (MQ=255) aaaaGACGGGCGCCTGTCGGTAACCGAACTGGCCGACCGCGTAGGGCTCAGCCTGTCACCCTGCCATCGGCGCTTGAAGGCACTGGAAGAGTCCGGAGCCATTCTGGGCTATCACGCACGGCTGGCACCGAGCGCCCTTGGGCTGAACt > 4:63998/1‑149 (MQ=255) aGACGGGCGCCTGTCGGTAACCGAACTGGCCGACCGCGTAGGGCTCAGCCTGTCACCCTGCCATCGGCGCTTGAAGGCACTGGAAGAGTCCGGAGCCATTCTGGGCTATCACGCACGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTg < 6:159329/149‑1 (MQ=255) aCGGGCGCCTGTCGGTAACCGAACTGGCCGACCGCGTAGGGCTCAGCCTGTCACCCTGCCATCGGCGCTTGAAGGCACTGGAAGAGTCCGGAGCCATTCTGGGCTATCACGCACGGCTGGCACCGAGCGCCCTTgg < 7:14599/136‑1 (MQ=255) aCGGGCGCCTGTCGGTAACCGAACTGGCCGACCGCGTAGGGCTCAGCCTGTCACCCTGCCATCGGCGCTTGAAGGCACTGGAAGAGTCCGGAGCCATTCTGGGCTATCACGCACGGCTGGCACCGAGCGACCTTgg > 8:14599/1‑136 (MQ=255) gcCTGTCGGTAACCGAACTGGCCGACCGCGTAGGGCTCAGCCTGTCACCCTGCCATCGGCGCTTGAAGGCACTGGAAGAGTCCGGAGCCATTCTGGGCTATCACGCACGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTg < 6:231653/149‑1 (MQ=255) gcaggtccttggctaccacatgcagcaggtaatccgggtcgccgaacagccgctgcgcttcgacaatctgcgggatctgcgccagtgccgtttcaaagtccgccacCgg > 3:247823‑M1/107‑109 (MQ=255) gcaggtccttggctaccacatgcagcaggtaatccgggtcgccgaacagccgctgcgcttcgacaatctgcgggatctgcgccagtgccgtttcaaagtccgccacCgg < 4:247823‑M1/3‑1 (MQ=255) ccTGTCGGTAACCGAACTGGCCGACCGCGTAGGGCTCAGCCTGTCACCCTGCCATCGGCGCTTGAAGGCACTGGAAGAGTCCGGAGCCATTCTGGGCTATCACGCACGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTgg > 1:243286/1‑149 (MQ=255) cTGTCGGTAACCGAACTGGCCGACCGCGTAGGGCTCAGCCTGTCACCCTGCCATCGGCGCTTGAAGGCACTGGAAGAGTCCGGCGCCATTCTGGGCTATCACGCACGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTgg > 7:195708/1‑148 (MQ=255) cTGTCGGTAACCGAACTGGCCGACCGCGTAGGGCTCAGCCTGTCACCCTGCCATCGGCGCTTGAAGGCACTGGAAGAGTCCGGAGCCATTCTGGGCTATCACGCACGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCt < 6:120998/146‑1 (MQ=255) cTGTCGGTAACCGAACTGGCCGACCGCGTAGGGCTCAGCCTGTCACCCTGCCATCGGCGCTTGAAGGCACTGGAAGAGTCCGGAGCCATTCTGGGCTATCACGCACGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCt > 5:120998/1‑146 (MQ=255) aaCTGGCCGACCGCGTAGGGCTCAGCCTGTCACCCTGCCATCGGCGCTTGAAGGCACTGGAAGAGTCCGGAGCCATTCTGGGCTATCACGCACGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTg < 4:55280/134‑1 (MQ=255) aaCTGGCCGACCGCGTAGGGCTCAGCCTGTCACCCTGCCATCGGCGCTTGAAGGCACTGGAAGAGTCCGGAGCCATTCTGGGCTATCACGCACGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTg > 3:55280/1‑134 (MQ=255) cgTAGGGCTCAGCCTGTCACCCTGCCATCGGCGCTTGAAGGCACTGGAAGAGTCCGGAGCCATTCTGGGCTATCACGCACGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAAccc > 8:108127/1‑149 (MQ=255) cgTAGGGCTCAGCCTGTCACCCTGCCATCGGCGCTTGAAGGCACTGGAAGAGTCCGGAGCCATTCTGGGCTATCACGCACGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAAccc < 3:124647/149‑1 (MQ=255) ggCTCAGCCTGTCACCCTGCCATCGGCGCTTGAAGGCACTGGAAGAGTCCGGAGCCATTCTGGGCTATCACGCACGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAg < 7:108127/149‑1 (MQ=255) tcgccgaacagccgctgcgcttcgacaatctgcgggatctgcgccagtgccgtttcaaagtccgccacCGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTg > 8:51013‑M1/69‑149 (MQ=255) ccTGTCACCCTGCCATCGGCGCTTGACGGCACTGGAAGAGTCCGGAGCCATTCTGGGCTATCACGCACGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTgg < 7:145494/149‑1 (MQ=255) cTGTCACCCTGCCATCGGCGCTTGAAGGCACTGGAAGAGTCCGGAGCCATTCTGGGCTATCACGCACGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGc < 3:67780/149‑1 (MQ=255) tCACCCTGCCATCGGCGCTTGAAGGCACTGGAAGAGTCCGGAGCCATTCTGGGCTATCACGCACGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCg < 2:243286/147‑1 (MQ=255) ccTGCCATCGGCGCTTGAAGGCACTGGAAGAGTCCGGAGCCATTCTGGGCTATCACGCACGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACttt < 6:48893/149‑1 (MQ=255) gCCATCGGCGCTTGAAGGCACTGGAAGAGTCCGGAGCCATTCTGGGCTATCCCGCACGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACtt < 3:242941/145‑1 (MQ=255) gCCATCGGCGCTTGAAGGCACTGGAAGAGTCCGGAGCCATTCTGGGCTATCACGCACGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACtt > 4:242941/1‑145 (MQ=255) cATCGGCGCTTGAAGGCACTGGAAGAGTCCGGAGCCATTCTGGGCTATCACGCACGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACttt < 8:252485/144‑1 (MQ=255) cATCGGCGCTTGAAGGCACTGGAAGAGTCCGGAGCCATTCTGGGCTATCACGCACGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACttt > 7:252485/1‑144 (MQ=255) gcttcgacaatctgcgggatctgcgccagtgccgtttcaaagtccgccacCGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCgg < 1:203238‑M1/79‑1 (MQ=255) gcttcgacaatctgcgggatctgcgccagtgccgtttcaaagtccgccacCGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCgg > 2:203238‑M1/51‑129 (MQ=255) gcgcTTGAAGGCACTGGAAGAGTCCGGAGCCATTCTGGGCTATCACGGACGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGt < 8:160684/99‑1 (MQ=255) gcgcTTGAAGGCACTGGAAGAGTCCGGAGCCATTCTGGGCTATCACGGACGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGt > 7:160684/1‑99 (MQ=255) ggCACTGGAAGAGTCCGGAGCCATTCTGGGCTATCACGCACGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACTTTGAAACGGCACTGgcg > 4:253723/1‑145 (MQ=255) aCTGGAAGAGTCCGGAGCCATTCTGGGCTATCACGCACGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACTTTGaaa < 5:128548/131‑1 (MQ=255) aCTGGAAGAGTCCGGAGCCATTCTGGGCTATCACGCACGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACTTTGaaa > 6:128548/1‑131 (MQ=255) tGGAAGAGTCCGGAGCCATTCTGGGCTATCACGCACGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACTTTGAAACGGCACTGGCGCAGATCCCg > 6:65255/1‑149 (MQ=255) ggAAGAGTCCGGAGCCATTCTGGGCTATCACGCACGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACTTTGAAACGGCACTGGCGCAGATCCCg > 7:187433/1‑148 (MQ=255) gagTCCGGAGCCATTCTGGGCTATCACGCACGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACTTTGAAACGGCACTGGCGCAGATCCCGCAGAt > 2:56594/1‑149 (MQ=255) ggAGCCATTCTGGGCTATCACGCACGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACTTTGAAACGGCACTGGCGCAGATCCCGCAGATTGTCg > 4:74375/1‑148 (MQ=255) tGGGCTATCACGCACGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACTTTGAAACGGCACTGGCGCAGATCCCGCAGATTGTCGAAGCGCAGCgg > 4:121647/1‑149 (MQ=255) ggCTATCACGCACGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACTTTGAAACGGCACTGGCGCAGATCCCGCAGATTGTCGAAGCGCAGCgg < 8:117721/147‑1 (MQ=255) tCACGCACGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACTTTGAAACGGCACTGGCGCAGATCCCGCAGATTGTCGAAGCGCAGCGGCTGTTc < 5:65255/148‑1 (MQ=255) acgcacgGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACTTTGAAACGGCACTGGCGCAGATCCCGCAGATTGTCGAAGCGCAGCGGCTGTTCgg < 3:253723/148‑1 (MQ=255) acgcacgGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACTTTGAAACGGCACTGGCGCAGATCCCGCAGATTGTCGAAGCGCAGCGGCTGTTCgg < 3:74375/148‑1 (MQ=255) | AACTGATCGAAAAATCCTTGCCGAGCTGCAAAAAGACGGGCGCCTGTCGGTAACCGAACTGGCCGACCGCGTAGGGCTCAGCCTGTCACCCTGCCATCGGCGCTTGAAGGCACTGGAAGAGTCCGGAGCCATTCTGGGCTATCACGCACGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACTTTGAAACGGCACTGGCGCAGATCCCGCAGATTGTCGAAGCGCAGCGGCTGTTCGG > NC_002947/4149557‑4149847 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |