New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4149705 =	38 (0.900)	4 (0.100)	4/242	NT	9.5%	coding (157/453 nt)	PP_3654	leucine‑responsive regulatory protein
	?	NC_002947	4149783 =	41 (1.040)					coding (235/453 nt)	PP_3654	leucine‑responsive regulatory protein

GCCTGTCACCCTGCCATCGGCGCTTGAAGGCACTGGAAGAGTCCGGAGCCATTCTGGGCTATCACGCACGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACTTTGAAACGGCACTGGCGCAGATCCCGCAGATTGTCGAAGCGCAGCGGCTGTTCGGCGACCCGGATTACCTGCTGCATGTGGTAGCCAAGGACCTGCCGGCGTTTCAGAAGCTGTATGACGAGCACCTGACCAGTATTC  >  NC_002947/4149637‑4149930                                                                                                                                                   |                                                                                                                                                    tcgccgaacagccgctgcgcttcgacaatctgcgggatctgcgccagtgccgtttcaaagtccgccacCGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTg                                                                                                                                                   >  8:51013‑M1/69‑149 (MQ=255)  ccTGTCACCCTGCCATCGGCGCTTGACGGCACTGGAAGAGTCCGGAGCCATTCTGGGCTATCACGCACGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTgg                                                                                                                                                  <  7:145494/149‑1 (MQ=255)   cTGTCACCCTGCCATCGGCGCTTGAAGGCACTGGAAGAGTCCGGAGCCATTCTGGGCTATCACGCACGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGc                                                                                                                                                 <  3:67780/149‑1 (MQ=255)      tCACCCTGCCATCGGCGCTTGAAGGCACTGGAAGAGTCCGGAGCCATTCTGGGCTATCACGCACGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCg                                                                                                                                                <  2:243286/147‑1 (MQ=255)          ccTGCCATCGGCGCTTGAAGGCACTGGAAGAGTCCGGAGCCATTCTGGGCTATCACGCACGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACttt                                                                                                                                          <  6:48893/149‑1 (MQ=255)             gCCATCGGCGCTTGAAGGCACTGGAAGAGTCCGGAGCCATTCTGGGCTATCCCGCACGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACtt                                                                                                                                           <  3:242941/145‑1 (MQ=255)             gCCATCGGCGCTTGAAGGCACTGGAAGAGTCCGGAGCCATTCTGGGCTATCACGCACGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACtt                                                                                                                                           >  4:242941/1‑145 (MQ=255)               cATCGGCGCTTGAAGGCACTGGAAGAGTCCGGAGCCATTCTGGGCTATCACGCACGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACttt                                                                                                                                          <  8:252485/144‑1 (MQ=255)               cATCGGCGCTTGAAGGCACTGGAAGAGTCCGGAGCCATTCTGGGCTATCACGCACGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACttt                                                                                                                                          >  7:252485/1‑144 (MQ=255)                   gcttcgacaatctgcgggatctgcgccagtgccgtttcaaagtccgccacCGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCgg                                                                                                                                                     <  1:203238‑M1/79‑1 (MQ=255)                   gcttcgacaatctgcgggatctgcgccagtgccgtttcaaagtccgccacCGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCgg                                                                                                                                                     >  2:203238‑M1/51‑129 (MQ=255)                             ggCACTGGAAGAGTCCGGAGCCATTCTGGGCTATCACGCACGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACTTTGAAACGGCACTGgcg                                                                                                                           >  4:253723/1‑145 (MQ=255)                                aCTGGAAGAGTCCGGAGCCATTCTGGGCTATCACGCACGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACTTTGaaa                                                                                                                                      <  5:128548/131‑1 (MQ=255)                                aCTGGAAGAGTCCGGAGCCATTCTGGGCTATCACGCACGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACTTTGaaa                                                                                                                                      >  6:128548/1‑131 (MQ=255)                                  tGGAAGAGTCCGGAGCCATTCTGGGCTATCACGCACGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACTTTGAAACGGCACTGGCGCAGATCCCg                                                                                                                  >  6:65255/1‑149 (MQ=255)                                   ggAAGAGTCCGGAGCCATTCTGGGCTATCACGCACGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACTTTGAAACGGCACTGGCGCAGATCCCg                                                                                                                  >  7:187433/1‑148 (MQ=255)                                       gagTCCGGAGCCATTCTGGGCTATCACGCACGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACTTTGAAACGGCACTGGCGCAGATCCCGCAGAt                                                                                                             >  2:56594/1‑149 (MQ=255)                                             ggAGCCATTCTGGGCTATCACGCACGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACTTTGAAACGGCACTGGCGCAGATCCCGCAGATTGTCg                                                                                                        >  4:74375/1‑148 (MQ=255)                                                       tGGGCTATCACGCACGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACTTTGAAACGGCACTGGCGCAGATCCCGCAGATTGTCGAAGCGCAGCgg                                                                                             >  4:121647/1‑149 (MQ=255)                                                         ggCTATCACGCACGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACTTTGAAACGGCACTGGCGCAGATCCCGCAGATTGTCGAAGCGCAGCgg                                                                                             <  8:117721/147‑1 (MQ=255)                                                              tCACGCACGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACTTTGAAACGGCACTGGCGCAGATCCCGCAGATTGTCGAAGCGCAGCGGCTGTTc                                                                                       <  5:65255/148‑1 (MQ=255)                                                                acgcacgGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACTTTGAAACGGCACTGGCGCAGATCCCGCAGATTGTCGAAGCGCAGCGGCTGTTCgg                                                                                     <  3:253723/148‑1 (MQ=255)                                                                acgcacgGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACTTTGAAACGGCACTGGCGCAGATCCCGCAGATTGTCGAAGCGCAGCGGCTGTTCgg                                                                                     <  3:74375/148‑1 (MQ=255)                                                                  caccggctggcgggttacctcgcgtagcgtcacgaataccagcgcggcaaagttcagcccaagggcgctcggtgccagccgGTGGCGGACTTTGAAACGGCACTGGCGCAGATCCCGCAGATTGTCGAAGCGCAGCGGCTGTTCGGCGa                                                                                  >  8:51013‑M2/82‑149 (MQ=255)                                                                    ccggctggcgggttacctcgcgtagcgtcacgaataccagcgcggcaaagttcagcccaagggcgctcggtgccagccgGTGGCGGACTTTGAAACGGCACTGGCGCAGATCCCGCAGATTGTCGAAgc                                                                                                    >  2:203238‑M2/80‑129 (MQ=255)                                                                    ccggctggcgggttacctcgcgtagcgtcacgaataccagcgcggcaaagttcagcccaagggcgctcggtgccagccgGTGGCGGACTTTGAAACGGCACTGGCGCAGATCCCGCAGATTGTCGAAgc                                                                                                    <  1:203238‑M2/50‑1 (MQ=255)                                                                             aCCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACTTTGAAACGGCACTGGCGCAGATCCCGCAGATTGTCGAAGCGCAGCGGCTGTTCGGCGACCCGGATTAcc                                                                       >  7:247839/1‑149 (MQ=255)                                                                             aCCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACTTTGAAACGGCACTGGCGCAGATCCCGCAGATTGTCGAAGCGCAGCGGCTGTTCGGCGACCCGGATTAcc                                                                       <  8:195708/149‑1 (MQ=255)                                                                             aCCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACTTTGAAACGGCACTGGCGCAGATCCCGCAGATTGTCGAAGCGCAGCGGCTGTTCGGCGACCCGGACTAcc                                                                       >  1:79394/1‑149 (MQ=255)                                                                                     cccTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACTTTGAAACGGCACTGGCGCAGATCCCGCAGATTGTCGAAGCGCAGCGGCTGTTCGGCGACCCGGATTACCTGCTGCAt                                                               >  2:188176/1‑149 (MQ=255)                                                                                             cTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACTTTGAAACGGCACTGGCGCAGATCCCGCAGATTGTCGAAGCGCAGCGGCTGTTCGGCGACCCGGATTACCTGCTGCAtgt                                                             <  6:247463/143‑1 (MQ=255)                                                                                             cTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACTTTGAAACGGCACTGGCGCAGATCCCGCAGATTGTCGAAGCGCAGCGGCTGTTCGGCGACCCGGATTACCTGCTGCAtgt                                                             >  5:247463/1‑143 (MQ=255)                                                                                             cTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACTTTGAAACGGCACTGGCGCAGATCCCGCAGATTGTCGAAGCGCAGCGGCTGTTCGGCGACCCGGATTACCTGCTGCATGTGGTAGc                                                       >  6:191213/1‑149 (MQ=255)                                                                                              tGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACTTTGAAACGGCACTGGCGCAGATCCCGCAGATTGTCGAAGCGCAGCGGCTGTTCGGCGACCCGGATTACCTGCTGCATGTGGTAGc                                                       >  8:151790/1‑148 (MQ=255)                                                                                                  cTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACTTTGAAACGGCACTGGCGCAGATCCCGCAGATTGTCGAAGCGCAGCGGCTGTTCGGCGACCCGGATTACCTGCTGCATGTGGTAGCCAAg                                                   >  4:222680/1‑148 (MQ=255)                                                                                                         gcgcTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACTTTGAAACGGCACTGGCGCAGATCCCGCAGATTGTCGAAGCGCAGCGGCTGTTCGGCGACCCGGATTACCTGCTGCATGTGGTAGCCAAGGACCTGcc                                           >  4:255485/1‑149 (MQ=255)                                                                                                         gcgcTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACTTTGAAACGGCACTGGCGCAGATCCCGCAGATTGTCGAAGCGCAGCGGCTGTTCGGCGACCCGGATTACCTGCTGCATGTGGTAGCCAAGGACCTGcc                                           <  8:187433/149‑1 (MQ=255)                                                                                                               gTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACTTTGAAACGGCACTGGCGCAGATCCCGCAGATTGTCGAAGCGCAGCGGCTGTTCGGCGACCCGGATTACCTGCTGCATGTGGTAGCCAAGGACCTGCTGGc                                        >  5:136158/1‑146 (MQ=255)                                                                                                               gTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACTTTGAAACGGCACTGGCGCAGATCCCGCAGATTGTCGAAGCGCAGCGGCTGTTCGGCGACCCGGATTACCTGCTGCATGTGGTAGCCAAGGACCTGCTGGc                                        <  6:136158/146‑1 (MQ=255)                                                                                                               gTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACTTTGAAACGGCACTGGCGCAGATCCCGCAGATTGTCGAAGCGCAGCGGCTGTTCGGCGACCCGGATTACCTGCTGCATGTGGTAGCCAAGGACCTGCCGGCGt                                      <  1:188176/148‑1 (MQ=255)                                                                                                                  ttCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACTTTGAAACGGCACTGGCGCAGATCCCGCAGATTGTCGAAGCGCAGCGGCTGTTCGGCGACCCGGATTACCTGCTGCATGTGGTAGCCAAGGACCTGCCGGCGttt                                    >  4:231666/1‑147 (MQ=255)                                                                                                                     gTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACTTTGAAACGGCACTGGCGCAGATCCCGCAGATTGTCGAAGCGCAGCGGCTGTTCGGCGACCTGGATTACCTGCTGCATGTGGTAGCCAAGGACCTGCCGGCGTTTCAg                                 >  3:18186/1‑147 (MQ=255)                                                                                                                     gTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACTTTGAAACGGCACTGGCGCAGATCCCGCAGATTGTCGAAGCGCAGCGGCTGTTCGGCGACCCGGATTACCTGCTGCATGTGGTAGCCaa                                                    <  1:229778/128‑1 (MQ=255)                                                                                                                     gTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACTTTGAAACGGCACTGGCGCAGATCCCGCAGATTGTCGAAGCGCAGCGGCTGTTCGGCGACCCGGATTACCTGCTGCATGTGGTAGCCaa                                                    >  2:229778/1‑128 (MQ=255)                                                                                                                     gTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACTTTGAAACGGCACTGGCGCAGATCCCGCAGATTGTCGAAGCGCAGCGGCTGTTCGGCGACCCGGATTACCTGCTGCATGTGGTAGCCAAGGACCTGCCGGCGTTTCAg                                 >  2:1836/1‑147 (MQ=255)                                                                                                                      tGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACTTTGAAACGGCACTGGCGCAGATCCCGCAGATTGTCGAAGCGCAGCGGCTGTTCGGCGACCCGGATTACCTGCTGCATGTGGTAGCCAAGGACCTGCCGGCGTTTCAGAAg                              <  3:255485/149‑1 (MQ=255)                                                                                                                       gACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACTTTGAAACGGCACTGGCGCAGATCCCGCAGATTGTCGAAGCGCAGCGGCTGTTCGGCGACCCGGATTACCTGCTGCATGTGGTAGCCAAGGACCTGCCGGCGTTTCAGAAGc                             >  5:244270/1‑149 (MQ=255)                                                                                                                        cagcccaagggcgctcggtgccagccgGTGGCGGACTTTGAAACGGCACTGGCGCAGATCCCGCAGATTGTCGAAGCGCAGCGGCTGTTCGGCGACCCGGATTACCTGCTGCATGTGGTAGCCAAGGACCTGCCGGCGTTTCAGAAg                              <  7:51013‑M2/120‑1 (MQ=255)                                                                                                                           cTACGCGAGGTAACCCGCCAGCCGGTGGCGGACTTTGAAACGGCACTGGCGCAGATCCCGCAGATTGTCGAAGCGCAGCGGCTGTTCGGCGACCTGGATTACCTGCTGCATGTGGTAGCCAAGGACCTGCCGGCGTTTCAGAAGCTGTa                         <  4:18186/149‑1 (MQ=255)                                                                                                                                cgAGGTAACCCGCCAGCCGGTGGCGGACTTTGAAACGGCACTGGCGCAGATCCCGCAGATTGTCGAAGCGCAGCGGCTGTTCGGCGACCCGGATTACCTGCTGCATGTGGTAGCCAAGGACCTGCCGGCGTTTCAGAAGCTGTATGAc                     >  1:44516/1‑148 (MQ=255)                                                                                                                                            ccagccgGTGGCGGACTTTGAAACGGCACTGGCGCAGATCCCGCAGATTGTCGAAGCGCAGCGGCTGTTCGGCGACCCGGATTACCTGCTGCATGTGGTAGCCAAGGACCTGCCGGCGTTTCAGAAGCTGTATGACGAGCACCTGAc          >  7:208422‑M2/8‑147 (MQ=255)                                                                                                                                            ccagccgGTGGCGGACTTTGAAACGGCACTGGCGCAGATCCCGCAGATTGTCGAAGCGCAGCGGCTGTTCGGCGACCCGGATTACCTGCTGCATGTGGTAGCCAAGGACCTGCCGGCGTTTCAGAAGCTGTATGACGAGCACCTGACCa        <  6:244270‑M2/142‑1 (MQ=255)                                                                                                                                                ccgGTGGCGGACTTTGAAACGGCACTGGCGCAGATCCCGCAGATTGTCGAAGCGCAGCGGCTGTTCGGCGACCCGGATTACCTGCTGCATGTGGTAGCCAAGGACCTGc                                            >  3:247823‑M2/4‑109 (MQ=255)                                                                                                                                                ccgGTGGCGGACTTTGAAACGGCACTGGCGCAGATCCCGCAGATTGTCGAAGCGCAGCGGCTGTTCGGCGACCCGGATTACCTGCTGCATGTGGTAGCCAAGGACCTGc                                            <  4:247823‑M2/106‑1 (MQ=255)                                                                                                                                                  gGTGGGGGACTTTGAATCGGCACTGGCGCAGATCCGGCAGATTGTCGAAGCGCAGCGGCTGTTCGGCGACCCGGACTACCTGCTGCATGTGTTAGCCAAGGACCTGCCGGCGTTTCAGAAGCTGTATGACGAGCACCTGACCAGTATTc  <  2:79394‑M2/148‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                    GCCTGTCACCCTGCCATCGGCGCTTGAAGGCACTGGAAGAGTCCGGAGCCATTCTGGGCTATCACGCACGGCTGGCACCGAGCGCCCTTGGGCTGAACTTTGCCGCGCTGGTATTCGTGACGCTACGCGAGGTAACCCGCCAGCCGGTGGCGGACTTTGAAACGGCACTGGCGCAGATCCCGCAGATTGTCGAAGCGCAGCGGCTGTTCGGCGACCCGGATTACCTGCTGCATGTGGTAGCCAAGGACCTGCCGGCGTTTCAGAAGCTGTATGACGAGCACCTGACCAGTATTC  >  NC_002947/4149637‑4149930

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.